Megamonas funiformis: GXM21_02880
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Entry
GXM21_02880 CDS
T06475
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfun
Megamonas funiformis
Pathway
mfun03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GXM21_02880 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfun03400
]
GXM21_02880 (mfd)
Enzymes [BR:
mfun01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GXM21_02880 (mfd)
DNA repair and recombination proteins [BR:
mfun03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GXM21_02880 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QIB59369
LinkDB
All DBs
Position
587550..590879
Genome browser
AA seq
1109 aa
AA seq
DB search
MNILFPALAKEVTLTKINECFNQDYGQNYIYGLAGTQKHIVIANAYKQNPKTTIIITHNQ
DGVEEWYNDFSSLLPEASIWELPALDVMSVSATAKSLELKAKRMKILGMLTRKEPVIILA
TTNAAMQKDMSRQDFENSSVQIELNKEYEHDKILEQLVSLGYERVDKVEQIGQFSARGGI
IDIYPINSDTPIRIEFFDSEIESIREFAIDSQRSLRNIAKCEILPLMQMDDTGSPAIFLS
YLNKDCNVILDEPLHLKEAVEGSIKENPEIKEFVYDWNYILTSAKKHNIIYMSLMMQRIA
DTEPEQLISVAVKSTAPFQKQMHLLGEEIKNWLEQKNEILICLGDKTKIAYLQDVLEQQK
IPVSRESEPKELSKDRVTFIVGSLLNGFEFPQSRLVVITEKDILGRQKKKLRPRQSGKNK
NDKISHFRDINIGDYVVHVNHGIGKYLGVETLTIGNVHRDYLHIKYSGTDKLFVPTDQVH
LIQKYIGSEGDVPRLSKMNGTAWKKANAKAKASVENIAKDLINLYAERKNGKGFAFAPDT
PWQKEFEDAFPYEETPDQLKAIAEIKADMEKPVPMDRLLCGDVGFGKTEVAIRAAFKAVM
SNKQVAVLVPTTVLVQQHYQTFSNRFNDFGPKIGIICRFNSPKEQKKVLEDLATGQIDIL
IGTHAILNEKKVKFKDLGLLIVDEEQRFGVKQKEKIKRISKNIDVLSLSATPIPRTLHMS
LVGARDMSVIETPPQERFPVQTYVIENNDMIIKDAIKREVRRGGQVYFIYNRVETIDKMY
LHLLSMLPDVKIGIAHGQMSEEELERAMLNFYEGKYDILLATSIIENGLDVSNANTIIIY
DADYFGLSQLYQMRGRVGRSKQMAFAYFIYQKDKILSEMAEKRLQAIKEFAQLGSGFKIA
MRDLEIRGAGDLLGSQQHGHISSVGFEMYCRLLEEAVETLQTGKEPEKVVEPIIELKEDA
YLDGEYINDATNKIEIYQRIAAIRTDEHADQLEEELIDRFGALTEPVKKIMQVARLKNYA
RKLKIKSIIEKPAFVEIYFDKAPNIETENMLLAKKQFDNLLKFVPKQNTIQIKITPINKK
HIINLCLKVVKVLTGEKLQKMTLKKEEKK
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgaatatactctttcctgcattagctaaagaggtaactttaactaagataaatgaatgt
tttaatcaagattatggtcaaaattatatttatggcttagcaggtacacaaaaacatata
gttattgctaatgcatataaacagaatcctaaaacgacaattattattacacataatcaa
gatggtgtagaagaatggtataatgatttctcttcattattgccagaagcatctatttgg
gaattgccagcattagatgtcatgtctgtaagtgctacagcaaaaagcttagaattaaaa
gctaagagaatgaaaattttgggaatgctcactagaaaagagcctgtcattattttagcg
actaccaatgctgctatgcaaaaagacatgtctcgtcaggattttgaaaattctagtgtg
caaatagaactcaataaagaatacgaacatgataaaattttagaacaattagtatcttta
ggttatgaacgtgtagataaagtcgaacaaatagggcaattcagtgctcgtggtggaatt
atagatatttatcctataaattcagatacgcctatacgtattgagttttttgacagtgaa
atagagtccatacgtgaatttgctatagatagtcaacgttctttgcgcaatatagctaaa
tgtgaaatcttgccattgatgcaaatggacgatacaggctcaccagctatatttttatct
tatttaaataaagattgtaatgtaattttagatgaaccactacatttaaaagaagctgtt
gaaggcagtataaaagaaaatcctgagataaaagaatttgtctatgactggaattatatt
ttaacttctgcaaaaaagcataatattatttatatgtctttgatgatgcaacgaatagca
gatacagagccagaacagctcatcagtgtagcagtaaaatctacagcaccttttcaaaag
cagatgcatttattaggtgaagaaattaaaaattggctagaacaaaaaaatgaaatattg
atttgtttgggtgataaaacaaaaatagcatatttacaagatgtattagaacaacaaaaa
atacctgtatcacgagaaagtgagccgaaagaattatccaaagatagagttacatttatc
gtaggttcacttttaaatggttttgaattccctcaatctcgattggtggtaatcacagaa
aaagatatattaggtcgtcaaaagaaaaagttaagaccacgtcaatcgggtaaaaataaa
aatgataaaatatctcattttagagatataaatatcggcgattatgttgtacatgtaaat
catggtattggtaaatatctaggtgtggaaacattgacaataggcaatgttcatcgtgat
tatttacatataaaatacagcggtacagataaattattcgtgccaacagaccaagtgcat
ttaattcaaaaatatattggttctgaaggtgatgtgcctcgtttatctaagatgaatggt
acagcatggaaaaaagcaaacgcaaaagcaaaagcttctgtagaaaatattgctaaagat
ttaatcaatctctatgcagaacgtaagaatggcaaaggttttgcatttgctccagatacg
ccatggcaaaaagaatttgaagatgcttttccttatgaagaaacacctgaccaattaaaa
gcgatagcagagataaaagcagatatggaaaaacctgttcctatggatagacttttatgc
ggtgatgtaggctttggtaaaacagaagtagccattagagctgcttttaaagctgtaatg
agcaataaacaagttgctgtattagtgccgactactgtattagtgcaacaacattatcaa
acttttagcaatcgttttaatgattttggaccgaaaatcggcattatttgtagatttaat
agcccgaaagaacaaaagaaagttttagaagatttggcaacaggtcaaattgatattttg
attggtactcatgctattttgaatgagaaaaaagtaaaatttaaagatttaggtttattg
attgttgatgaagaacagcgttttggcgtaaaacaaaaagaaaaaataaaacgcataagt
aaaaatatcgatgtattatctttgagtgcaacacctataccacgtacactgcatatgtct
cttgtaggtgctagagatatgtctgttatcgaaactccaccacaggagcgtttccctgtg
cagacttatgtaattgaaaataatgatatgattattaaagatgctattaagcgtgaagtt
cgtcgtggcggtcaggtatattttatttacaatagagtagaaactatagataagatgtat
ttgcatttattatctatgcttcctgatgtaaaaatagggatagctcatgggcagatgagt
gaagaagaattagaaagagctatgctcaatttttatgaaggaaaatacgatatcttattg
gctacaagcattattgaaaatggtttagatgtatcaaatgctaatactataattatttat
gatgcagattattttggtctatctcagctctatcagatgcgaggccgtgtaggtcgttca
aaacaaatggcatttgcatattttatttatcagaaagataaaatcttatctgaaatggca
gaaaagagattacaggcaataaaagaatttgctcaattaggttctggatttaaaattgct
atgcgagatttagaaattcgcggtgctggtgatttattaggttctcaacaacatggtcat
atttctagtgtgggttttgagatgtattgtcgtctattagaagaagcagtagaaacattg
caaacaggtaaagagccagaaaaagtagtagaaccgataattgaattgaaagaagatgct
tatttagatggagaatatataaatgacgccactaataagattgaaatttatcaacgcatt
gcagcgatacgaacagacgaacatgcagaccaattagaggaagaattaatcgaccgtttt
ggtgcattgactgaacctgtaaagaaaataatgcaagtagcacgattgaaaaattatgct
cgtaaattaaaaataaaatctattattgaaaaacctgcttttgtggaaatatattttgat
aaagcaccaaatatagagacagaaaatatgcttttagcgaaaaagcaatttgataatcta
ttaaaatttgtgccaaaacaaaatacgatacagataaaaattacgccaataaataaaaaa
catataataaatttatgtttaaaagtagtaaaagttttaacaggtgaaaaattacagaag
atgactcttaaaaaagaggagaaaaaataa
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