Marinobacterium iners: CFI10_01190
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Entry
CFI10_01190 CDS
T07136
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mgeo
Marinobacterium iners
Pathway
mgeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFI10_01190 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgeo03021
]
CFI10_01190 (rpoB)
03400 DNA repair and recombination proteins [BR:
mgeo03400
]
CFI10_01190 (rpoB)
Enzymes [BR:
mgeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFI10_01190 (rpoB)
Transcription machinery [BR:
mgeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFI10_01190 (rpoB)
DNA repair and recombination proteins [BR:
mgeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFI10_01190 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
PWI_CCDC43
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QSR33616
LinkDB
All DBs
Position
247807..251907
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSYTEKKRIRKNFAKLRQVMDVPYLLAIQLDSYRRFLQDGNASDGRRDEGLHAAFNSV
FPIVSYSGNAALEYAGYRLGEPVFDVKECQQRGITYAAPLRVKVRLIIYDRDSSTKAVKD
IKEQEVYMGEMPLMTENGTFVVNGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDSLFVRIDRRRKLPATILLRALGLEAEEILETFFETTGWTLEQDA
IWMDLIPERLRGETMSFEIKDPEGSVIVEAGRRITPRHIRQMAKAGMQQLNVPAEYLIGK
ALARNLVDPSTGELVANCNAEITEELIGKMQVLGIDRIETLYTNDLDCGPFVSDTLRIDP
TRSQLEALVEIYRMMRPGEPPTKESAEGLFENLFFSEERYDLSGVGRMKFNRRLGREEVT
GSGVLDKSDILDVMKTLIEIRNGRGTVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSMAESDNLMPQDLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVFARTNDYGFLETPYRRVL
DGQVTDEIDYLSAIEENKYVIAQASAAMDDNGRLTDDLVAVRHLNEFTVMPPERIQYMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGIERNVAQDSGVC
VVARRGGVIESVDAARVVVRVHDDEVQAGDAGVDIYNLTKYVRSNQNTCINQRSIVRPGE
VVQRGDIMADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITSDIPNVGESALSKLDEAGIVHIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKTGTIGKVIDVQVFTRDGVQKDERSLSIEKSELDG
IRKDLNEEFRIVEQATFERLQRKLVGLSAEGGAGLKKGEEISEEFLSGLKKSEWFKIRVA
DESVAEELELARKHLEERRENLDKRFEDKKRKLQTGDDLAPGVLKIVKVYVATKRRVQPG
DKMAGRHGNKGVISVIMPVEDMPYDANGEPVDIVLNPLGVPSRMNVGQILETHFGAAAKG
LGRKINGILEQEQAKAEKVKALRTFLGQIYNDDHGGLTAGRQEELDSFSDAEILELAANL
KGGVPLATPVFDGAKESEIKALLRLADMDDSGQVRLYDGRTGDLFDRPVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIELESE
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcatatactgagaagaaacgcattcgcaagaatttcgccaagttgcgacag
gttatggatgtgccatacctgctggcgattcagctcgactcttatcgtcgcttcctgcag
gatggcaacgcaagcgatggacgtcgtgacgaaggcttgcacgctgcgttcaattccgta
tttccaattgtctcttactctggcaacgcagccctcgagtacgccggttaccgtctgggc
gaacccgtattcgacgtgaaagagtgtcagcagcgtggtatcacctacgcagcgcctctg
cgcgtcaaagtgcgcctgatcatctatgatcgcgactcttctacgaaggcggtcaaggat
atcaaggagcaggaagtttacatgggcgaaatgcccctgatgaccgagaacggtaccttt
gttgttaatggtaccgagcgtgttatcgtatctcagctgcaccgctctccgggtgtattc
tttgaccacgacaagggcaagacacactcttcaggcaagctgctctattctgcccgcatc
attccttaccgtggctcatggctcgacttcgagttcgatccgaaggacagtctgttcgtg
cgtatcgaccgtcgccgcaagttgccggcgaccattctgctgcgtgcgttgggccttgaa
gcggaagaaattctcgaaaccttctttgaaaccaccggctggaccctcgagcaggatgcc
atctggatggacctgatcccggagcgtctgcgtggcgagaccatgtcgttcgagatcaag
gaccctgaaggcagcgtgattgttgaagcgggtcgccgtattaccccgcgtcacatccgc
cagatggccaaggcaggcatgcagcagctgaacgtgccggccgaatacctgatcggcaag
gcattggcgcgcaacctggtcgatccgagtaccggtgaactggttgccaactgcaacgcc
gagatcaccgaagaactgatcggtaagatgcaggtgctgggtattgatcgcatcgagaca
ctgtacaccaacgacctggattgcggtccgttcgtgtctgacactctgcgtatcgacccg
acccgcagtcagctggaagcgctggttgaaatctatcgcatgatgcgtcccggcgagccg
cctaccaaggaatcggctgaaggtctgttcgagaacctgttcttctctgaagagcgctat
gacctgtccggcgttggtcgcatgaagttcaaccgtcgactgggccgtgaagaagtaacc
ggttccggtgtgctcgacaagagcgacattctggatgtcatgaagaccttgatcgaaatt
cgcaacggtcgtggcaccgtagatgacatcgatcacctgggcaaccgtcgtatccgttcc
gtcggtgaaatggccgagaaccagttccgtgtcggcttggtgcgtgttgagcgcgccgta
cgtgagcgcctctcaatggccgaatccgacaacctgatgccgcaggatctgatcaacgcc
aagccagtggccgccgcgatcaaggaattctttggctccagccagttgtcgcagttcatg
gaccagaacaacccgctgtcggaaatcacccacaagcgtcgtgtttccgcactgggcccg
ggtggtttgacccgcgaacgtgccggcttcgaagtccgtgacgtgcatccgacccactac
ggtcgtgtctgcccgatcgagacccccgaaggtccgaacatcggtctgatcaactcgctg
gccgtttttgcccgcaccaacgactacggcttccttgaaacgccgtaccgtcgtgtgctg
gacggtcaggtaaccgacgaaatcgattacctgtcggcgattgaagaaaacaagtacgtt
atcgcccaggcttcagcggccatggatgataacggtcgtctgacagacgatctggtggca
gtgcgtcacctcaacgaatttaccgtaatgccgccggaacgtatccagtacatggatgtg
tctccgcgtcaggtggtatccgttgcagcggcactgattccgttcctggaacacgatgac
gccaaccgagcgctcatgggctccaacatgcagcgtcaggctgtgccgactctccgtgcc
gagaagccgctggtcggtaccggtattgagcgtaacgtggcgcaggactccggtgtctgc
gtagtggcgcgtcgcggtggtgtgatcgagtcggtcgatgctgctcgcgttgtggtacgt
gttcatgacgatgaagttcaggcgggcgatgccggtgtggatatctacaacctcaccaag
tatgttcgttccaaccagaacacctgcatcaaccagcgctccatcgtccgtccgggcgaa
gtggtacagcgtggcgatatcatggctgacggcccgtccgttgacctgggtgagttggcg
ctgggccagaacatgcgcatcgcgttcatgccctggaatggttacaacttcgaggactcc
attctcatctccgagcgtgtggtgcaggaagatcgctttaccaccatccacattcaggaa
ctgacctgtgtggcgcgtgataccaagctggggccggaagagattacctccgatattccc
aacgtgggcgaatctgcactctccaaactggatgaggccggcattgttcacatcggtgct
gaagtgggcccgggcgacattctggtaggcaaggtaacgccgaaaggcgaaacccagttg
acgccggaagaaaaactgctgcgtgcgatcttcggtgaaaaggcgtccgatgttaaggat
acctccttgcgcgttaagaccggtaccatcggcaaggttatcgatgtgcaggtattcacc
cgtgacggcgtgcagaaggatgagcgttcactctcgatcgaaaaatcagagctggatggc
attcgcaaggatttgaacgaagagttccgtatcgtcgagcaggcaaccttcgaacgtctg
cagcgtaagctggtcggtctgtccgctgaaggcggtgcaggtctgaagaaaggcgaagag
atcagcgaagagttcctgtccggactgaaaaagtccgaatggttcaagattcgtgtggct
gatgagtcggtagcagaagaactggagctggcacgcaagcacctggaagagcgtcgcgag
aacctggacaagcgttttgaagacaagaaacgcaaactgcagaccggcgatgatctggct
ccgggcgtactcaagatcgtcaaggtatacgttgctaccaagcgccgcgtacagccgggt
gacaagatggcgggtcgtcacggtaacaagggtgttatctcggttatcatgccggttgaa
gacatgccgtacgatgccaatggtgaaccggtcgatatcgtgctcaacccgctgggtgta
ccgtcacgtatgaacgtgggtcagattctggaaacgcacttcggtgctgctgccaagggt
ctgggtcgcaagatcaacggtatcctggaacaggagcaggccaaggccgagaaggtcaag
gcgctgcgtaccttcctgggacagatctacaatgatgatcacggcggtttgaccgcgggt
cgtcaggaagagctggacagcttcagcgatgctgaaatcctggagctggctgctaacctg
aaaggcggtgtaccgctggcaacgccggtatttgatggcgccaaggaaagcgaaatcaag
gcactgctgcgtctggctgatatggatgacagcggtcaggtacgtctgtatgacggccgc
accggcgacctgtttgaccgtccggtaaccgttggctacatgtacatgctgaagttgaac
cacttggttgacgataagatgcatgcccgttccaccggctcctacagcctcgttactcag
cagccgctgggtggtaaggcacagttcggtggtcagcgcttcggtgagatggaggtctgg
gcgctggaagcctatggtgccgcctacaccctgcaggagatgctgaccgtgaagtcggac
gatgtgaacggtcgtaccaagatgtacaagaacatcgtcgatggcgatcaccgtatggaa
ccgggtatgcccgaatcgttcaacgtgttgatcaaggaaatccgttctctcggcatcgat
atcgagcttgagagcgagtaa
DBGET
integrated database retrieval system
