Mucilaginibacter ginsenosidivorax: FSB76_19800
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Entry
FSB76_19800 CDS
T06204
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mgk
Mucilaginibacter ginsenosidivorax
Pathway
mgk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mgk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FSB76_19800 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgk03021
]
FSB76_19800 (rpoB)
03400 DNA repair and recombination proteins [BR:
mgk03400
]
FSB76_19800 (rpoB)
Enzymes [BR:
mgk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FSB76_19800 (rpoB)
Transcription machinery [BR:
mgk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FSB76_19800 (rpoB)
DNA repair and recombination proteins [BR:
mgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FSB76_19800 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
QEC78067
UniProt:
A0A5B8W3U2
LinkDB
All DBs
Position
4722842..4726645
Genome browser
AA seq
1267 aa
AA seq
DB search
MANNINQRVNFATSRKVLDYPDFLDVQLQSFQEFFQLETTSDNRYKEGLFKVFAENFPIS
DSRNIFVLEFLDYFIDPPRYDIQECIERGLTYSVPLKAKLRLSCNDEEHEDFETIVQDVY
LGTIPYMTPKGTFVINGAERVIVSQLHRSPGVFFGQSRHTNGTKLYSARVIPFKGSWIEF
ATDVNNVMYAYIDRKKKFPVTTLLRAIGYDSDKDILELFELADEVKVSKSGLKKFIGRKL
AARVLKKWVEDFVDEDTGEVVSIDRNEIILERETVLEDDHIDMIIDAGVKTIILNKEDAS
TSGDYTIIYNTLQKDTSNSEKEAVEHIYRQLRNAEPPDEETARGIIDRLFFSDKRYDLGD
VGRYRINRKLKLNTSDETKVLTKQDIIAIVKYLIKLINSKAEVDDIDHLSNRRVRTVGEQ
LYAQFGVGLARMARTIRERMNIRDNEVFTPTDLINARTLSSVINSFFGTNQLSQFMDQTN
PLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHA
KINNLGFIETPYKRVVEGKVQVQEPVIYLSAEDEDGKTIGQANAHYDDNGVFALPKVKAR
FEGDFPIIDPEKLDLMDIAPNQITSIAASLIPFLEHDDANRALMGSNMQRQAVPLLRPEA
PIVGTGLEGRVAKDSRTLINAEGDGVVEYVDANEIRIKYDRNELDRLISFDGDSKSYRLT
KFKKTNQSTTMNLKPIVKKGQRVSKGEVLCEGYATQAGELALGRNLKVAFMPWQGYNFED
AIVISERVVSQDIFTSLHVEEFELEVRDTKRGEEELTPDIPNVSEEATKDLDEDGIIRVG
AEVKEGDILIGKITPKGESDPSPEEKLLRAIFGDKAGDVKDASLKTPPSIAGVVIDTKLF
SRAKKTSKAEEKAQLEKLDNKHDKAVKDLKNTLIEKLFEIVNGKTSQGVYNVYKELHVPK
GVKFTQKILVELNYENINPTKWTTDDDKNDQIKTLLHNYNIKVNEELGAYRRDKFAISVG
DELPSGIVQMAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRDEDMPFLEDGTPVDIVLN
PLGVPSRMNLGQIYETVLGWAGKELGIKFATPIFDGASHTEVEEWVKKANLPESGRTYLY
NGLTGDRFDQQTTVGIIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEM
EVWALEAFGAANILQEILTVKSDDVIGRAKTYEAIVKGENLPTPSVPESFNVLVHELRGL
GLDITLE
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaacaacattaatcaaagagtaaactttgcaaccagtagaaaggtacttgattac
cccgatttcctggatgttcagttacaatctttccaggaattttttcaattggaaaccacc
tcagacaaccgctataaagaaggtttgtttaaagtgtttgctgaaaattttccgatctcg
gattcaaggaacatcttcgttttagagtttctggattactttattgatccgccacgttat
gatatacaagagtgtatcgagcgcggattaacttatagcgtaccattaaaagccaagctt
cgcctgtcatgtaacgatgaagagcacgaagattttgaaacaattgtacaagacgtttat
ttgggcacaatcccttacatgacgcctaaaggtacatttgttattaacggtgccgaacgt
gtaattgtatcgcagttacaccgttcacctggtgtattctttggccaaagccgccacacc
aacggtacaaaattatactctgcccgtgttattcctttcaagggttcatggattgagttt
gctacagacgttaacaacgtgatgtacgcttatatcgaccgtaaaaagaaattcccggtt
accacgttgctgcgtgccattggttatgactctgataaggacattttagagttatttgaa
ctggccgacgaagtaaaggttagcaaatcgggcctgaagaaattcattggccgtaagctt
gctgcaagggtactcaaaaaatgggtagaagattttgtggacgaggataccggtgaagtg
gtatctatcgaccgtaacgaaattatccttgagcgtgaaactgtattagaagatgaccat
attgatatgatcattgatgctggcgttaaaaccatcatcctgaacaaggaagatgcttca
accagcggtgattatactattatatataacactttacaaaaggatacttcaaactccgag
aaagaagcggtggagcatatctatcgtcaattacgtaacgccgaaccacctgatgaggaa
actgcacgtggtatcatcgatcgtttgttcttctcggataaaagatatgacctgggcgat
gtgggccgctaccgcatcaaccgcaagttgaaattaaatacctctgatgaaactaaggta
ttaaccaagcaggatattatcgccatcgtaaaatacttgatcaaactgatcaactcaaaa
gccgaggtggatgatattgatcacttgtcaaaccgtcgtgttcgtacagttggcgagcaa
ttatatgcccagtttggtgttggtttggcccgtatggcccgtaccatccgtgagcgtatg
aacatccgcgacaacgaggtatttacaccaaccgatctgatcaacgcgcgtacactatca
tctgtgatcaactcgttcttcggaactaaccagttatcacagtttatggaccaaaccaac
ccactggcagagatcacgcacaagcgtcgtctgtcagcccttgggcccggtggtctgtca
cgtgagcgtgcgggtttcgaggttcgtgacgtacactatacccactacggtaggttatgt
accatcgaaactccggaaggaccaaacattggtttgatttcgtcgctttgcgtacacgcc
aaaatcaataatttaggctttatcgaaactccgtacaaacgtgtggttgaaggtaaagtg
caggttcaggagccggttatctatttatcggccgaagatgaagatggtaaaacaattggc
caggcaaacgcgcattatgatgataatggtgtatttgctttaccgaaagtaaaagcccgt
tttgaaggtgacttcccgattattgatccggagaaacttgatttaatggatattgcgcca
aaccagatcacttctatcgcggcttcgctgattccgttcctagaacatgatgatgctaac
cgtgccttgatgggttcaaacatgcaacgccaggctgtacctttgttacgccctgaagcg
ccaattgttggtaccggtttggaaggtcgtgtggctaaagattcacgtacactaatcaat
gccgaaggcgatggtgtggttgaatatgtagatgctaacgaaatccgtattaaatatgac
cgtaacgagcttgaccgcctgatatcttttgatggcgattcaaaaagctaccgtttaacc
aagtttaagaaaaccaaccaaagtactacgatgaaccttaagccaattgttaaaaaaggc
caaagggtatcaaaaggcgaggtgctttgcgaaggttacgcaacacaggcaggcgagctt
gccctgggccgtaacttaaaagtggctttcatgccttggcaaggttacaactttgaggat
gctatcgtgatctccgagcgcgttgtatcgcaggatattttcacttcgcttcacgttgaa
gaatttgaattggaagtacgtgataccaaacgtggcgaagaagaattaacaccagatatc
cctaacgtatcagaagaagctactaaggaccttgacgaagacggtattatccgtgttggt
gccgaggttaaagaaggcgatatcctgattggtaagattactccgaaaggcgaatctgac
ccatcaccggaagaaaaactgttacgcgccatttttggtgataaagctggtgatgttaag
gatgcatctctaaagactccaccttcaattgcaggtgtggttatagataccaaattgttt
agccgtgccaagaaaacgtcgaaagccgaagaaaaagcacagttggagaaattggataac
aaacatgataaagcagtaaaagaccttaaaaacactttgattgaaaagttatttgagatt
gtgaacggcaaaacatcacaaggtgtttacaacgtttacaaagagcttcatgtacctaaa
ggtgttaaattcacccagaaaattttagttgaacttaattacgaaaacattaacccaact
aaatggactactgatgatgataaaaacgaccagataaaaaccttacttcataactacaac
atcaaagttaatgaggaattaggtgcttaccgtcgtgataaatttgctatcagcgtgggc
gatgagttaccatctggtattgttcaaatggctaaagtttacatcgctaaaaagcgtaag
cttaaagtaggtgataaaatggccggtcgtcacggtaataaaggtattgttgcacgtatt
gtacgtgatgaggatatgcctttccttgaagacggaacaccggttgatattgtgttgaac
ccgctgggtgtaccttcacgtatgaacttagggcagatatacgaaaccgtattaggttgg
gcaggtaaagagttaggcattaaattcgctaccccaatttttgatggtgcaagccatacc
gaagttgaggagtgggttaaaaaagcaaacttaccagaatctggccgtacctatttatac
aatggcttaactggtgacagatttgaccagcagaccacagtaggtattatatacatgctg
aaattgggtcacatggttgatgataagatgcacgcacgttctatcgggccatactcatta
attacacaacaaccattgggtggtaaagcccagtttggtggtcagcgttttggtgagatg
gaggtttgggcattggaagcatttggtgctgccaatattctgcaagagatattaaccgtt
aaatcggatgatgttatcggccgtgccaaaacttatgaggctattgttaaaggtgaaaac
ctgccaacaccatcagttcctgaatcattcaacgtattggttcatgagttaagaggttta
ggtttagatatcacgttagaataa
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integrated database retrieval system
