Magnetospirillum gryphiswaldense MSR-1 v2: MGMSRv2__3294
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Entry
MGMSRv2__3294 CDS
T02960
Name
(GenBank) putative exodeoxyribonuclease III (xthA)
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
mgy
Magnetospirillum gryphiswaldense MSR-1 v2
Pathway
mgy03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MGMSRv2__3294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgy03400
]
MGMSRv2__3294
Enzymes [BR:
mgy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
MGMSRv2__3294
DNA repair and recombination proteins [BR:
mgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
MGMSRv2__3294
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
Motif
Other DBs
NCBI-ProteinID:
CDL00509
UniProt:
V6F4X8
LinkDB
All DBs
Position
complement(3370333..3371121)
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AA seq
262 aa
AA seq
DB search
MRVVTWNINSIRLRFDLLRQVVERLTPDVICLQEIKVVDELFPADECRSLGFPHIAFHGM
KGYNGVAILSKRPIRETMTPSWCGRDDRRHLVAKLDEAEIHCLYVPAGGDIPDPQQNDKF
AHKLDFLRQVTDWYAGTYKPGDRVILTGDLNVAPLETDVWSHKQLLKVVSHTPIEVDLLD
RMQASLGWVDAMRRFIPPSERLYTWWSYRSPDWEKNDRGRRLDHVWVTPALGDTLRSVEV
LRECRSWTQPSDHVPVLVELDI
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtgtcgtcacctggaatatcaattccatccgcctgcgctttgacttgttgcgccag
gtggtggagcgcttgactcccgacgtgatctgtctgcaggaaatcaaggtggtggacgag
ctgtttcccgccgatgaatgccggagcttaggctttccccacatcgccttccacggcatg
aagggctataatggcgtcgccatcctgtccaagcgaccaatccgcgaaaccatgacgccg
tcgtggtgtgggcgcgacgaccgccgccatctggtggccaagctggacgaggcggaaatc
cactgcttgtacgttcccgccggcggcgatatccccgatcctcagcaaaacgacaaattc
gcccacaagctggatttcctgcgccaagtcaccgactggtacgcaggcacctacaagccc
ggcgatcgggtgatcctgaccggcgacctcaacgtcgcccccttggaaaccgacgtgtgg
tcgcacaagcaattgctgaaggtggtcagtcatacccccatcgaggtggatttgctggac
cgcatgcaagccagcctgggctgggtcgatgccatgcgccgtttcattccgccatcggaa
cgcctgtatacgtggtggagctatcgttcgcccgattgggaaaagaacgaccgcggtcgc
cggcttgaccatgtatgggtcactccggccctgggcgacaccttgcggtcggtcgaggtg
ctgcgtgagtgccggtcgtggacccagccctccgaccatgtgccagtgctggtggagctg
gatatctag
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