Metamycoplasma hominis ATCC 27545: MLBD4_01130
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Entry
MLBD4_01130 CDS
T03410
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
mhom
Metamycoplasma hominis ATCC 27545
Pathway
mhom03030
DNA replication
mhom03410
Base excision repair
mhom03420
Nucleotide excision repair
mhom03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mhom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MLBD4_01130 (ligA)
03410 Base excision repair
MLBD4_01130 (ligA)
03420 Nucleotide excision repair
MLBD4_01130 (ligA)
03430 Mismatch repair
MLBD4_01130 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mhom03032
]
MLBD4_01130 (ligA)
03400 DNA repair and recombination proteins [BR:
mhom03400
]
MLBD4_01130 (ligA)
Enzymes [BR:
mhom01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MLBD4_01130 (ligA)
DNA replication proteins [BR:
mhom03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MLBD4_01130 (ligA)
DNA repair and recombination proteins [BR:
mhom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MLBD4_01130 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MLBD4_01130 (ligA)
MMR (mismatch excision repair)
DNA ligase
MLBD4_01130 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MLBD4_01130 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
BRCT_2
PTCB-BRCT
HHH_5
RNA_ligase
DNA_ligase_ZBD
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AIU33962
LinkDB
All DBs
Position
241186..243192
Genome browser
AA seq
668 aa
AA seq
DB search
MNSNNDIEKIRKEIFDLQAKISAWDNAYYNLDSPEVPDEIYDVEFNKLKALEEKYASFFS
NEELKNSPTKKINALASDLFKKVKHKRPMLSLNKAYSLDEIQKFIDNIKKITSDFSFFIE
PKIDGLSISIIYEDGKLVRAITRGDGITGEDVTANVVQMSCIPKTIEYKESLEVRGEVYL
AISDFEKLNLKLGQENKNKLANPRNAAAGTLRQLNSQIIKERNLSAFLYYVVDPLQHNIK
TMQEEHEFLKTYGFPVTPEVQHANTLQDIEEYIRNFKNQKLLIDYETDGVVIKLNEVQYF
DKLGSTAKFPHYAIAFKYEPNVETTTIKRIYATVGRTGLVTYNAELEPVEISGSLVSFAT
LNNFQYIKDLNLNENDLVYIKKAGEIIPCVIGLISSKKEIDHFQKVEFCPYCHNKLVDSE
TGLEQFCSNDQCPEIQRRKLIHFCSKDGLDINTMGERNIDLFLKNSLISNPIDIFNLKNK
KQDLLKLNRMGEKSIENILISIDECKNKPLYKMISALSIPLIGVKLAKFVASKIKSLHNL
LNYDFSQLIDYHEIGDKIINSIISWISNDSNKKLVEDIINLGYDLKDENESITNLLENKS
FVITGTLGHPRSYFERLIEKNGGLIHSSISSKTNYLLAGENAGSKLQKANKLNITIITEE
DLFKMIGQ
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaatagcaataacgatatagaaaaaataagaaaagaaatttttgatttgcaggctaaa
attagtgcttgagataatgcatattataatttagattcgcctgaagttccagatgaaatt
tatgatgttgaatttaataaattaaaggcgcttgaagaaaaatatgcctcgttttttagt
aatgaagaattaaaaaattctccaacaaaaaaaattaatgcattggcttccgatctattt
aaaaaagtaaaacataaacgtccgatgctttcattaaataaagcatattcgttagatgaa
attcaaaaatttattgataatataaagaaaattacgtctgatttttctttttttattgag
cctaaaattgatggcctttcaatttctattatttacgaagatggcaaattagttagagca
ataacaagaggagatggaataactggcgaagatgttacggcaaatgttgttcaaatgtct
tgcatccctaaaactattgaatataaagaatcattagaggtaaggggggaagtttattta
gcaatatctgattttgaaaaattaaatttaaaattagggcaagaaaataaaaataaactt
gcaaatcctagaaatgctgcagcaggcacattaagacaattaaattctcaaattattaaa
gaacgaaatttgtcagcatttttgtattatgttgtagatcctttgcaacataatattaaa
acaatgcaagaagaacatgaattcttaaaaacttatgggtttcccgttactcccgaagtt
caacatgctaatacattgcaagatattgaagaatatattagaaacttcaagaatcagaaa
ttattaatagattatgaaacagatggagttgttataaagttaaacgaggttcaatatttt
gacaagttaggatcaacagctaagttcccccattatgcaattgcatttaaatatgaacct
aatgttgaaacaacaacaataaaaagaatatatgcgacagtaggaagaactggattggtt
acatacaatgcagaattagaacctgtagaaatttcgggtagtcttgtaagctttgcaacg
ttgaataatttccaatacataaaagatttgaatttaaatgaaaatgatttagtatatatt
aaaaaagctggagagattattccttgtgtaataggcttaatttctagcaaaaaagaaatt
gatcattttcaaaaagtagaattctgcccatattgtcacaataaacttgtcgattcagaa
acgggattggaacaattttgctcaaatgatcaatgccctgaaatacaaagaagaaaattg
attcatttttgttcaaaggatggtttagatattaatactatgggcgagagaaatattgat
ctatttttaaaaaattctttaatttccaaccctattgatatttttaatttaaagaacaaa
aaacaagatttattaaaattaaatagaatgggtgaaaagtctattgagaatatcttaatt
tctattgatgaatgtaagaataaacctttatataaaatgatttctgctctttcaatccca
ctaattggagtaaaattagctaaattcgtagcctcaaaaattaaatcgttacataattta
ttaaattatgatttttcacaattaattgattatcatgaaataggagataaaattataaat
tctataatttcttgaatatctaatgattctaataaaaagttagttgaggacattattaat
cttggatatgatttaaaagatgaaaatgaatcaattactaatttattggaaaataaatca
tttgtaataacaggaacattaggacatcctaggtcatattttgaaaggttaattgaaaaa
aatggtggtttaattcactcaagtatttcatctaaaactaattatttattagcaggtgaa
aatgccggatctaaattgcaaaaggcaaataaattaaatattactataataactgaagaa
gatttatttaaaatgattggtcaataa
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