Mycolicibacterium insubricum: MINS_13000
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Entry
MINS_13000 CDS
T06933
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mij
Mycolicibacterium insubricum
Pathway
mij03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mij00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MINS_13000 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mij03021
]
MINS_13000 (rpoB)
03400 DNA repair and recombination proteins [BR:
mij03400
]
MINS_13000 (rpoB)
Enzymes [BR:
mij01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MINS_13000 (rpoB)
Transcription machinery [BR:
mij03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MINS_13000 (rpoB)
DNA repair and recombination proteins [BR:
mij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MINS_13000 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BBZ65871
LinkDB
All DBs
Position
1340593..1344075
Genome browser
AA seq
1160 aa
AA seq
DB search
MAVSRQSKSVTTNNSVPGAPNRISFAKLREPLEVPGLLDVQTESFEWLIGSDRWRAGAAA
RGDIANPKGGLEEVLDELSPIEDFSGSMSLSFSDPRFDEVKASVEECKDKDMTYAAPLFV
TAEFINNNTGEIKSQTVFMGDFPMMTEKGTFIINGTERVVVSQLVRSPGVYFDASIDKST
EKTLHSVKVIPGRGAWLEFDVDKRDYVGVRIDRKRRQPVTVLLKALGWTSEQIRERFGFS
EIMMGTLEKDPTAGTDEALLDIYRKLRPGEPPTKESAQTLLENLFFKEKRYDLARVGRYK
VNKKLGLNAGQPITSSTLTEEDIVATIEYLVRLHEGQTEMTAPGGVEVPVEVDDIDHFGN
RRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAAIKEFFGTSQ
LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIG
LIGSLSVYARVNPFGFIETPYRKVVDGVVTDQIDYLTADEEDRHVVAQANSPLDPEGHFT
ESRVLVRRKGGEVEYVSSTEVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMQRQA
VPLVRSEAPLVGTGMELRAAIDAGDVVVTEKAGVIEEVSADYITVMADDGTRQTYRMRKF
ARSNHGTCANQRPIVDAGQRVEAGQVLADGPCTENGEMALGKNLLVAVMPWEGHNYEDAI
ILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRDIPNVSDEVLADLDERGIVRIGAE
VRDGDVLVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGESGKVIGIRVFSR
EDDDELPAGVNELVRVYVAQKRKISDGDKLAGRHGNKGVIGKILAQEDMPFLPDGTPVDI
ILNTHGVPRRMNIGQILETHLGWMAKAGWNVEGSPEWAANLPEDLLHAPSDSIVATPVFD
GAREEELQGLLSSTLPNRDGEVMVDGDGKARLFDGRSGEPFPYPVTVGYMYILKLHHLVD
DKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYTLQELLTIKSDDTVG
RVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSSDGAAIEMRDGDDEDLERA
AANLGINLSRNESASVEDLA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
ttggcagtctctcgccagagcaagtcagtgaccaccaacaactccgtgccaggagcgccc
aaccgcatttccttcgccaagctccgcgaaccgcttgaggttccggggcttctcgacgtt
cagaccgagtccttcgaatggctgatcggttcggaccggtggcgcgcaggcgccgcggcc
cgcggcgacatcgccaaccccaagggcggcctggaagaggtactcgacgagctgtcgccg
atcgaggacttctccggctccatgtcgctgagcttctccgacccgcgcttcgacgaggtg
aaggcctccgtcgaggagtgcaaggacaaggacatgacgtacgcggcaccgctgttcgtc
acggccgagttcatcaacaacaacaccggtgagatcaagagccagacggtcttcatgggt
gacttcccgatgatgaccgagaagggcaccttcatcatcaacggcaccgagcgtgtcgtg
gtcagccagctggtccgttcgccgggtgtgtacttcgacgcctccatcgacaagtccacc
gagaagacgctgcacagcgtcaaggtgatcccgggccgcggcgcctggctggagttcgac
gtcgacaagcgcgactacgtcggtgtccgcatcgaccgcaagcgccgccagccggtcacc
gtgctgctcaaggcgctgggctggaccagcgagcagatccgggagcgcttcggcttctcc
gagatcatgatgggcaccctggagaaggacccgaccgccgggaccgacgaggcgctgctg
gacatctaccgcaagctgcgcccgggcgagccgccgaccaaggagtccgcgcagaccctg
ctggagaacctgttcttcaaggagaagcgctacgacctggcccgggtgggccgctacaag
gtcaacaagaagctgggcctcaacgccggccagccgatcaccagctcgacgctgaccgaa
gaggacatcgtcgccaccatcgagtacctggtccgcctgcacgagggccagaccgagatg
acggcccccggtggcgtcgaggtgcccgtcgaggtcgacgacatcgaccacttcggcaac
cgccggctgcgcaccgtgggtgagctgatccagaaccagatccgcgtcggcctgtcccgc
atggagcgcgtcgtccgcgagcggatgaccacccaggacgtcgaggcgatcaccccgcag
accctgatcaacatccgtcccgtggtggcggcgatcaaggagttcttcgggaccagccag
ctgtcccagttcatggaccagaacaacccgctgtcgggcctgacccacaagcgccgcctg
tcggcgctgggccccggcggtctgtcccgggagcgcgcgggcctggaggtccgcgacgtg
cacccgtctcactacggccgcatgtgcccgatcgagaccccggaaggtccgaacatcggc
ctgatcggctcgctgtcggtgtacgcgcgggtcaacccgttcggcttcatcgagacgccc
taccgcaaggtcgtcgacggtgtggtcaccgaccagatcgactacctcaccgccgacgag
gaggaccgccacgtcgtggcgcaggccaactcgccgctggatcccgagggccacttcacc
gagtcccgggttctggtccgccgcaagggtggcgaggtcgagtacgtgtcctcgaccgag
gtcgactacatggacgtctcgccgcgccagatggtgtcggtggccacggccatgatcccg
ttcctggagcacgacgacgccaaccgcgccctgatgggtgccaacatgcagcgtcaggcg
gtgccgctggtccgcagtgaggcgccgctggtcggcaccggcatggagctgcgcgcggcc
atcgacgccggagacgtcgtcgtcaccgagaaggccggcgtcatcgaagaggtgtccgcc
gactacatcacggtgatggccgacgacggcacccggcagacctaccggatgcgcaagttc
gcccgctccaaccacggcacctgcgccaaccagcgtccgatcgtcgacgccggccagcgg
gtggaggccggtcaggtgctggccgacgggccgtgcaccgagaacggcgagatggcgctc
ggcaagaacctgctggtcgccgtcatgccgtgggagggccacaactacgaggacgccatc
atcctctcgcagcgcctggtggaggaggacgtcctgacgtccatccacatcgaggagcac
gagatcgacgcccgcgacaccaagctgggtgccgaggagatcacccgggacatcccgaac
gtctccgatgaggtgctcgccgacctcgacgagcgcggcatcgtccgcatcggcgccgag
gtccgcgacggcgacgtgctggtcggtaaggtcaccccgaagggcgagaccgagctgacc
ccggaggagcgcctgctgcgcgccatcttcggcgagaaggctcgcgaggtccgcgacacc
tccctgaaggtgccgcacggcgagtccggcaaggtcatcggcatccgggtgttctcccgc
gaggacgacgacgagctgcccgccggcgtcaacgagctggtccgcgtctacgttgcgcag
aagcgcaagatctccgacggtgacaagctcgccggccggcacggcaacaagggcgtcatc
ggcaagatcctggcgcaagaggacatgcccttcctgcctgacggcaccccggtcgacatc
atcctgaacacccacggtgtgccgcgacggatgaacatcggccagatcctggagacccac
ctcgggtggatggccaaggccggctggaatgtcgagggctccccggagtgggcggccaat
ctgcccgaggacctgctgcacgctccgtcggacagcatcgtggccaccccggtgttcgac
ggtgcccgcgaggaggaactgcagggtctgctgtcctccacgctgcccaaccgcgacggt
gaggtcatggtcgacggcgacggcaaggcgcggctgttcgacggccgttccggcgagccg
ttcccgtacccggtgacggtcggctacatgtacatcctcaagctgcaccacctggtcgac
gacaagatccacgcccgttcgaccggcccgtactcgatgatcacccagcagccgctgggc
ggtaaggcgcagttcggtggccagcggttcggtgagatggagtgctgggccatgcaggcc
tacggcgcggcgtacacgctgcaggaactcttgaccatcaagtccgacgacaccgtcggc
cgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgaaccgggcattccg
gagtcgttcaaggtgttgctcaaggaactgcagtcgctgtgcctcaacgtcgaggtgctc
tccagcgacggtgccgcgatcgaaatgcgcgacggcgacgacgaggacctggagcgcgca
gcggccaacctcggcatcaacctgtcgcgcaacgagtcggcatccgtcgaggatctcgcc
tag
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