Mangifera indica (mango): 123212848
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Entry
123212848 CDS
T07684
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
minc
Mangifera indica (mango)
Pathway
minc03013
Nucleocytoplasmic transport
minc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123212848
09122 Translation
03013 Nucleocytoplasmic transport
123212848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123212848
03041 Spliceosome [BR:
minc03041
]
123212848
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
123212848
Spliceosome [BR:
minc03041
]
Complex C
Other components
EJC/TREX
123212848
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123212848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
123212848
NCBI-ProteinID:
XP_044488001
LinkDB
All DBs
Position
4:complement(3431053..3457200)
Genome browser
AA seq
1867 aa
AA seq
DB search
MSLPQIECKYITEECIREWKSGNPTFRITNSVSMLRFLYELCSAMVRGELPFQKCKTALD
SVDFLDKPSEKEIASGFADIVTQMAQDLTMPGEYRARLIKLAKWLVESALVPLRLFQERC
EEEFLWEAEMIKIKAQDLKGKEVRVNTRILYQQTKFNLLREESEGYAKLATLLCQGSEDS
TQNASTATVGIIKSLIGHFDLDPNRVFDIVLECFELKPNSKVFLQLIPLFPKSHASQILG
FKFQYYQRLEVNSPAPFGLYNLAALLVKNEFIDLDSICAHLLPKDDEAFEHYNAFSAKRL
EEANKIGKINLAATGKDLMEDEKQGDVTIDLYAALDMETEAVAERSPELENSQTLGLLTG
FLSVDDWYHANVLFERLAPLNPVAHITICDGLFRLIGKTISSAYDIIRRTHIQSIGSISA
VGIDAMDTTDAPVNRSFVDLPKELFQMLATVGAYLYRDTVLLQKVCRVLRGYYVSALELV
NCDDDVSNIEPDLGGNRVPRQHLKEARSRVEEALGTCLLPSLQLIPANPAVGQEIWEVMN
LLPYEVRYRLYGEWEKDDERNPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHA
NPMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKDDGLN
LSDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLQELIQQMANVQYTE
NLTEEQLDAMAGSETLRYQATSFGVTRNNKALIKSTNRLKDSLLPKDEPKLAIPLLLLIA
QHRSVVVIAADAPYIKMVSEQFDRCHGTLLQYVEFLCSAVNPCTAYAQLVPSLNDLVHQY
HLDPEVAFLIYRPIMRLFKCQGSSDVFWPLDDNDTSNITTANLESAPIGYPGKVVLDLGS
QKPIMWSDLLDIVKTMLPSKAWNSLSPDLYTTFWGLTLYDLYVPRNRYESEIAKQHAALK
ALEELSDNSSSAITKRKKDKERIQESLDRLTSELQKHEENVASVRRRLSREKDNWLSSCP
DTLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPM
ICCCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQF
IKVHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISAVFPVTRKSGINLEKRVAKIKS
DEREDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKPAASLASKSLSGNVMAVQNGSH
SDLGSGKTVTAVTQHLESGSSVKDPTSRTKPTDGRLEKTESVTLGKSDPGHQKLKGSSMA
NGSDIHSSMSAPAQGGTSRSVENQKQVDESVNRTLDENMAKVATKNSADSESKASVKRSL
PAGSLNKATKQDIMKDDKSGKAVSRNSVSSISDRDLLSHASDGKQVGTTNVSSSRSEMHA
VDSKADSGVVKSSEIRFSGGKNDSNEVSDAPRASSSRIVHSPRHDNSAAVSKSSDKLQKR
NSPAEDPDRPSKRYKGDSEPRDVDIEVKLSDRERSQDPRFVDLEKTGTDEPNMYRSVDKP
LDRSKDKGYDRYDRDHRERVDRPDKSRGDDVIAEKPRDRSMERYGRERSVERGQDRGSDR
SFDKVKDDRNKDDRSKLRYSDSSSEKSYDDRFHGQNLPPPPPLPPHMIPQSVNTGRRDED
ADRRFGNTRHSQRLSPRHDEKERRRSEENNLVSQDDTKRRREDEFRERKREERDLLSLKV
DDRERDRERDRDKANLMKEDVDANVASKRRKLKRDHLPSGEAGEYSPVAPPPPALAIGIS
QSYDGRDRGDRKGVMVQRGVYLEEQNMRVHGKEVATKMTRRDSDPIYDREWEDEKRQRPE
PKRRHRK
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atgtctctccctcaaatagagtgtaaatacataacggaggaatgtattcgcgaatggaaa
agtggaaaccctaccttcagaatcacgaactcagtctccatgctgcgcttcctatacgag
ctttgctctgccatggtgcgcggcgagttgccgtttcaaaagtgtaaaacggcgttggat
tcggtggattttttggacaaaccatcggagaaagagatcgcctctggttttgcagatatt
gttactcaaatggctcaagatcttacaatgcctggggagtaccgtgcacgtctaataaag
ttggcaaagtggctggtggaatctgcactggtcccattgaggctcttccaggagcgatgt
gaggaagaatttttatgggaggctgaaatgatcaagataaaggctcaagatttgaagggc
aaagaggtgagagttaacactcgaattctttatcagcaaacaaaattcaaccttcttcga
gaagagagtgagggctatgcaaagctggccacccttctttgtcaaggttctgaagattca
actcaaaatgcatcaacagcgacagtaggcattattaagtcattaattggacattttgat
cttgaccccaaccgtgtttttgatattgttttggagtgttttgaactaaagccgaatagc
aaagtatttctgcaactgattcccttatttcccaagtctcatgcatcccaaattcttgga
tttaagtttcaatattatcagcggttggaagtaaacagccctgcaccgtttgggctctat
aaccttgcagccttgcttgtgaaaaatgagttcattgaccttgatagcatttgtgcacat
ttacttcccaaggatgatgaagcatttgaacattacaatgcattttcagctaagcggctt
gaagaggcaaacaaaattggaaaaataaatcttgctgctactggtaaggatctgatggaa
gatgaaaaacaaggagacgtgactattgatctatatgctgctttagacatggaaactgag
gctgttgctgaaaggtccccagagcttgaaaatagtcaaactttgggcttgcttacaggt
tttctttccgtagatgactggtaccatgccaatgtactatttgaacgtcttgccccactt
aatccggtagcacacattacaatctgtgatggcttatttaggctcattggaaaaacaatt
tcttcagcgtatgacatcattcgtcgtacgcatattcagagcattgggtcaatttctgct
gtgggtattgatgcaatggatacgactgatgcaccagtcaataggtcttttgtagatctt
cctaaagaacttttccagatgctggctactgttggggcttatctttatcgtgatactgta
ttactgcagaaggtatgtagagtgttgagaggttactatgtgtcagcacttgagcttgta
aactgtgatgatgacgtttcaaatattgaacctgatcttggtggaaaccgagttccccga
cagcacctaaaggaggctaggtcaagggtagaggaagctttaggaacttgtctacttcct
tctttacagttgatccctgcaaatccagcagttggtcaggagatttgggaagtaatgaat
ctccttccatatgaggtgcgatatcgtttgtatggtgaatgggaaaaagatgatgagcgg
aaccctatggttttagctgctaggcagactgctaagctggacacaaggaggattctgaaa
aggcttgccaaagaaaatttaaagcagcttggtcggatggttgcaaaattagctcatgca
aatccaatgactgtacttagaacaattgttcaccagattgaggcttacagggatatgatt
actcctgttgtagatgcgttcaagtatttgacacagcttgagtacgatgttttggaatat
gttgtcattgagcgcttggcacaaggtgggcgtgacaagctcaaagatgatggccttaat
ttgtctgattggcttcaatctttagcttcattttggggtcacctgtgtaaaaagtatcca
tcaatggaactgagaggccttttccagtatcttgtaaaccagttgaaaaaggggcaagga
attgagcttgttctgcttcaggaacttattcaacaaatggctaatgttcaatacacggag
aacctgactgaggagcagttggacgccatggcagggagtgagacccttcggtatcaggct
acttcttttggagtaactagaaataacaaggcattgatcaaatccaccaataggctaaaa
gattcattgcttccgaaggatgaaccaaagttggcaatccccctccttttgcttattgct
caacatcgttctgtggttgttatagctgcagatgcaccttacataaaaatggttagcgaa
cagtttgatagatgccatggaactcttcttcagtatgtggaatttctttgcagcgctgtg
aatccatgcactgcttatgctcagctggtcccctcacttaatgatcttgtgcaccaatac
caccttgatcctgaggttgctttcttaatatatcgccctataatgaggctctttaagtgt
caagggagttctgatgttttctggccattggatgataatgacacttcaaatatcacaact
gcaaacttggagtccgcacctataggatatccgggaaaagttgttctggatcttggttct
cagaagcctataatgtggtcagatcttcttgacattgttaaaaccatgttgccctcaaaa
gcctggaatagcctttctcctgatctctacacaactttttgggggctcacactctatgat
ctttatgttcctagaaaccgttatgaatctgaaattgccaagcagcatgctgcacttaaa
gctctggaagagctttctgataattcaagttctgcaataactaagagaaaaaaagacaaa
gaaagaattcaagagtctctagatcgtctgaccagtgaactccagaagcatgaagaaaat
gtagcatcagttcgtcggcggctttctcgtgaaaaagacaattggttgagttcctgccct
gatactctaaagattaatatggaattcctccagcgttgcatttttccacgctgtaccttc
agtatgccagatgctgtgtactgtgccatgtttgtacatacacttcattcccttgggaca
ccattttttaacaccgtcaaccacattgatgttctaatttgtaaaaccttacaacctatg
atatgctgttgcaccgagtatgaagcaggtagacttgggaggtttttgtatgagacacta
aagattgcttactactggaagagtgatgaatcgatttatgaacgtgagtgtgggaacatg
ccaggctttgctgtttattatagatatccaaacagtcagcgtgttacatacggccagttc
attaaggtacactggaagtggagtcaaagaattacacgactattgattcagtgcttggaa
tccactgaatacatggaaattcgtaatgctcttataatgttgacaaaaatttctgccgtg
ttccctgtcactagaaaaagtgggatcaaccttgaaaagcgggtagctaaaatcaaaagt
gatgaacgagaggatctcaaggtgttggcaactggtgttgctgctgctttggctgctcga
aaaccttcatgggttacagatgaagaatttggcatgggataccttgaactgaagcctgct
gcttcactggcttccaagtctttatctggtaatgtaatggctgtgcaaaatggttctcat
agtgatcttggctcaggaaaaacagttactgctgtaacacaacatttagaatctggaagt
tcagttaaagacccaacttcaagaacaaaacctactgatgggaggttggaaaaaacagaa
agtgtcacacttggaaaatctgatccgggacatcaaaaactaaaaggtagttcaatggcc
aatggttctgatattcattcatccatgtcagctcctgcacaagggggaacatcaagatct
gtggaaaatcaaaagcaggtggatgaatctgtaaatagaaccttggatgaaaacatggcc
aaagttgctacaaagaattctgcagactccgagtccaaagcttcagtgaaacgatctctg
ccagctggatcactcaacaaggcaacaaaacaggatattatgaaggatgataagtctgga
aaagctgttagtagaaattctgtctcttccatcagtgacagagatttgctttctcatgct
tcagatggcaagcaagttgggacgactaatgtttcttcatcaagatcagagatgcatgct
gttgactcaaaggcagatagtggagtagtcaagtcttctgagataaggttttctggtggt
aaaaatgatagcaatgaggtgtctgatgctccaagggcctcttcttcccgaatcgttcat
tctccaagacatgataactcggctgctgtttcaaaatctagtgacaaacttcaaaaaaga
aacagtcctgctgaagatcctgacagaccaagtaaacgctataaaggggactctgaacca
agggatgttgatattgaagtcaaattatctgacagagagaggtcccaggatcctcgattt
gtggatcttgagaaaacaggcacagatgaaccaaatatgtataggtccgtggacaagcct
ttggataggtcaaaagataaaggctatgatagatatgatagagaccatagggaaagagtt
gaccgccctgataagtcccggggagatgatgttatagctgaaaaacccagagataggtcc
atggaaaggtatggaagggagcgttcagttgagagagggcaagatagaggtagtgacagg
agttttgacaaagtaaaagatgatagaaacaaagatgacagaagtaaactgcgctacagt
gactcatcttcagaaaagtcttatgatgatcgatttcatggtcaaaatttgcctccacca
cctcctctgccccctcatatgatcccccaatctgttaatactggtagacgagatgaagat
gctgatagaaggtttggaaataccagacattcacagaggctttctccaagacatgatgaa
aaagagcggagacgatcagaagaaaataacttagtttcacaagatgataccaaacgtcgg
agggaagatgaatttcgagagagaaagagagaagaacgagatcttttgtcattgaaggtg
gatgaccgagagagagatcgggagagggatagggacaaagcaaatcttatgaaggaggat
gtggatgctaatgttgcctctaagagacggaaactaaagagagaccatcttccatcaggg
gaagctggtgagtattctcctgtggctccaccacctcctgctcttgctattggtatctcg
cagtcgtacgatggacgagataggggagaccgaaagggagtcatggtgcagcggggtgtt
tacttggaagaacaaaatatgagggttcatggaaaagaagtagcgaccaagatgactcgt
cgtgattcagatccaatttacgaccgagagtgggaagatgagaagcggcaaagacctgag
ccgaagaggagacaccggaagtag
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integrated database retrieval system
