Mangifera indica (mango): 123217063
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Entry
123217063 CDS
T07684
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123217063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123217063
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123217063
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123217063
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
123217063
NCBI-ProteinID:
XP_044493750
LinkDB
All DBs
Position
5:complement(20443616..20461626)
Genome browser
AA seq
2414 aa
AA seq
DB search
MLGLSAMIPSQIRFLLQSLTEANADSVFLELCQFIEYGIGECIITLQTCLDHLNLHETDS
RNPQLESIVASVFKYIMDKPNFGTVISESLRSTKINEQLLENLSNVLHLSVPERIGIGFA
LSDSENLDVILCGKNFCVAQIEKLCANPVPLNSAEQIQNIVMFLQRSSDLSKHLDSLTQM
LSSVKLKELTEFPLIPVLPDDMREAKCLRMDLFHECIDNDFDDILAEMEKEMSVGDVMKE
LGYGCTVDATWCKEILSLFLPLTEINLSRVLGTIARTYAGLEDNHNTFSTFGLAVGCGTY
SDLPPLSSWNADVLVKTIKQLAPSTNWTKVIENLDYEGFYIPNEEAFSFFMSVYKCACQD
PFPLHAICGGVWKNAEGQLSFLKYAVTGPPEIFTFGHSARQLTYVDAVHGHKLQLGLANH
AWLCLDLLDVLCQLAERGYASFVQSILEYPLKNCPEVLLLGMAHVNTTYSLIQSEVSFIV
FPMIIKSTFSSGMILHLWHVNPDLVLRGFVDIHNTEPESLIRILDICQELKILSSVLEMV
PFLSAIRLAVLASQKELVDLEKWLSGNLSTYKDYFFEECVKFVKEIQFGRSQDFSAKPFL
HSGALLNLYMEKITTIMKVLKLHTGLITSTKLLDELEKLHATILDSNPKLQNGGASESSA
TDGYADDIEAEANSYFHQMFSGHLTIEAMVQMLARFKESSVKREHSIYECMIANLFEEYR
FFPKYPDRQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQ
FVDRLIEWPQYCNHILQISHLRSTHSELVAFIERALARISAGHLETDGTNSASIVHQLGS
SQDTSGNGEVNSSGIARSGLQHSGQIQFQLRNESSLDERNKIPVASSNDVKPLLSSSGQP
SVVQLGDNSGVQKLQNTINAPAMLSGSPGFVRPSRGVTSTKFGSALNIETLVAAAERRET
PIEAPASEIQDKISFIINNISALNIEAKAREFTEILKDQYYPWFAQYMVMKRASIEPNFH
DLYLKFLDKVNSKALIKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKVLEPSLSSLAYQPPNPWTMGILGLLAE
IYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQM
ISEVKPGIISPLNHVELPVEVASSSNSGGPAHLLSQYAAPLRLSSGTLIEDEKLAALGLS
DQLPSAQGLFQATQTQTPFSVSQLSTAIPNIGTHVIINQKLSTSGLHLPFQRVVPIAMDR
AIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKE
PLRTSISSHLRTSLQGLNIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIT
QQLSLRRKHREGVGSSFFDPGMYAQGSMGAVPEALRPKPGHLSSTQQRVYEDFLRLPWQN
QSTHSSHTVSAGPLTSSGDSSLNGAYGLAAGQVNPGYSAIAGNTEFEAGSRSSDVSSGSI
ETSSAALLSVSSANNVTADSGGIQHNSENNSVCASFTPTSPAPELLSVDSTESGKEPGTT
SQLLPSPVTTERFGSSALEPSLSTRDALDKYHIFSQKLEALVVSDATEAEVQGVIAEVPD
IILRCISRDEAALAVAQKVFKGLYENASNSLHFGAHLAILAAIRDVCKLVVKELTRWVIY
SDEDRKFNKDITVGLIRRELLNLAEYNVQMAKLIDGGRNKAAMEFAISLLQTLVADESRV
ISELHNLVDALAKVAAKPGSSESLQQLIEIVKNPIVNVTASGAAAGMEDKIRQSKDKKAL
SLSTANREDYNSMEPADPDPAGFFDQVYVLFKEWYHICELPGTNDAACTRYILQLHQNGL
LKGDDMTDRFFRNLTKIAVEHSIQSESPQQVQSVSFHTIDSYAKLVLSILKYLPGEQGSI
KIILLSKILTVTVRFIQKDEEEKKASFNPRPYFRLFINWLLDLGLLDPAIDVANFQILTA
FANAFHALQPLKVPAFSFAWLELVSHRSFMPKLLIGNSQKGWPYIQRLLVDLLQFLEPFL
RNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHLTFCDVIPPSCIQMRNIILSAFPRN
MRLPDPSTPNLKIDLLPEIRDPPCILSEVDAALRAKQMKADVDEYLKTGQPGSSFLSELK
QKLLLPPSEVATAGTRYNVPLINSLVLYVGMQAIQQLQTRTPHSQSTGNNSSLTVFLVSA
ALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITR
VLLERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPM
EDSMVSGWVSDNTH
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgctgggtctttccgctatgattcctagtcagattcggttcttgcttcaaagcttgacc
gaagcaaacgccgattctgtttttttagagctctgtcagtttattgaatatggaattggg
gaatgcattattacactgcaaacttgcttggatcacttgaatctccatgaaactgactca
aggaatccgcagcttgagtcaatcgtagcatcggtttttaaatacatcatggataaacca
aattttggtactgtaattagtgagtcactgaggagtaccaagatcaatgagcaactgctg
gagaatttatctaatgtgctacatttatctgtacctgaaaggattgggattggttttgct
ttgtctgattcagaaaatcttgacgttatattgtgtgggaagaacttttgtgtagctcag
attgagaagttatgtgccaatcctgttcctttgaattcagctgagcaaattcagaatatt
gttatgtttcttcagcggtcaagtgacctttccaagcatctggactctcttacgcagatg
ttgtcttcagtgaaattgaaagaacttactgaatttcccttaattccagtgcttcctgat
gatatgcgtgaggctaagtgtttaagaatggatttgttccatgaatgcatagataatgat
tttgatgatattttggcggaaatggaaaaggaaatgagcgtgggagatgttatgaaggaa
ctaggttatggatgtacggttgatgccacgtggtgcaaagagattctctctcttttctta
ccgttgactgagattaatctttctagggtacttggtacaattgcacgtacctatgctggg
ctggaagataaccataacacattttcaacatttggcctggccgttggttgtggcacttat
tctgatctgccaccattaagctcttggaatgcagacgtccttgtaaaaacgatcaagcaa
cttgctcctagcaccaactggactaaagttattgagaacttggattatgagggtttctac
atccccaatgaggaggccttctcttttttcatgtctgtatataaatgtgcatgccaggat
ccattccctcttcatgccatttgtgggggtgtttggaagaacgctgagggccagttatct
tttcttaaatatgctgtaacagggccaccagaaatatttacctttggccattctgcaagg
cagctgacttatgttgatgcagtgcatggccataagcttcaacttggacttgcaaatcat
gcttggttgtgtcttgaccttctagatgtgctgtgccaactagctgagaggggttatgcc
agctttgtccaatcaatacttgagtaccctcttaaaaactgccctgaagtcctgcttctt
ggaatggcacatgttaatactacttatagtctcatccagtctgaagtatctttcattgtt
ttcccgatgataattaaaagtacctttagcagtggtatgattcttcacctctggcatgtg
aatcccgatcttgtgttgcgaggattcgtagatattcacaacacagaacctgaaagcttg
attagaatattagacatatgccaggagctgaagatcctatcatcagttctggagatggtc
ccttttctttctgctataaggttggcagttcttgcttcacaaaaagaacttgtagacctt
gagaagtggctgagtggtaacttaagtacatataaggattatttctttgaggagtgcgtt
aagtttgtcaaggagattcaatttggtagatcgcaggatttttctgccaaacctttcctt
cattctggtgctttattgaatctctacatggagaagatcactactattatgaaggttttg
aaattgcatactggcttgatcacttcaaccaaactccttgatgaactggaaaagttgcat
gcaacaatcttggattctaatccaaagctacagaatggtggagcttcagaatcatcagca
actgacggatatgcagatgatattgaggcagaagcgaactcttacttccatcagatgttt
tcgggtcacttgactattgaagcaatggttcaaatgcttgcacgattcaaggaatcttca
gtgaaaagggaacactcaatttatgagtgcatgattgcgaacctgtttgaggaatacagg
ttctttccgaagtatcctgacaggcaactcagaattgctgctgttctctttggctccatc
atcaagcatcagcttgtaactcatctcacccttggaattgccctgcgtggtgttctagat
gcattgcgaaaacctgctgattctaaaatgtttgtgtttggcacgaaagcactggagcag
tttgtggatcgtcttattgagtggccacagtactgcaaccatatattacaaatatctcac
ctgcgttcgacacactcagagcttgttgctttcattgaaagggcgcttgccaggatttca
gctgggcatttggaaacagatggaactaatagtgcttcaattgttcatcagcttggttct
tctcaggatacctcaggaaatggggaggttaatagttctggcattgcacgatctggtctg
caacattctggccagatccaatttcaactgagaaatgaaagttctcttgatgagcgtaat
aaaattccagtagcttcatcaaatgatgtaaaaccacttctgtcttcctctggacaacct
tcagttgtccaattgggtgataattctggtgttcagaagttgcaaaacacaataaatgct
ccagcaatgctgtctggctctcctggttttgttcgtccttcccgaggagttacatcaact
aaatttggctctgctttgaacattgaaacactagttgctgctgctgagagaagagagact
cccattgaggctccagcatctgagattcaggacaagatatcatttataatcaataatatt
tctgctctgaatatcgaggccaaagctagagaattcactgaaatattgaaggatcagtac
tatccgtggtttgcacagtatatggttatgaaaagagcaagcatcgaaccgaattttcac
gatttgtatttaaagtttctggataaagttaattcaaaggctctgatcaaagagattgtc
caggctacatatgagaactgcaaggttctattaggttcagaacttataaaatctagttca
gaagagcgatcgttgcttaaaaatttgggtagctggcttgggaagttaacaattggaaga
aaccaagttttaagggctcgtgaaatagatcctaaatcactgattatagaggcatatgag
aagggactgatgatcgctgtcattccgtttacctccaaggttcttgaaccatccctaagt
agtctagcatatcaacctccaaatccttggactatgggcattcttggattactagctgag
atctattccatgccaaacctgaaaatgaacctcaagtttgacatagaggtcttattcaag
aaccttggtgtggatatgaaggacataacaccaacatctcttctcaaggaccggaaaaga
gaaattgaaggaaaccctgacttttctaataaagatgttggagcatcccagcctcagatg
atttctgaagttaaaccaggaatcatttctcctctaaatcatgttgaattaccagttgag
gttgccagctcatctaattctgggggccctgcacatttactatctcagtatgctgctcct
cttcgtctttcttctggtactttgattgaggatgaaaaactagcggctcttggcttgtct
gatcagcttccttctgctcaaggactgtttcaagctactcaaacccagacacccttttct
gttagtcagctttccacggcaataccgaacattggtactcatgttatcatcaatcagaag
cttagtacctcaggcttgcacttgccctttcagagagtggttccaattgcgatggacaga
gctatcaaagagatagtgtcaggaattgttcagcgtagtgtttctatagctactcaaaca
acaaaagagcttgttttaaaggattatgcaatggaatcagatgagacacgcatatataat
gcagcacacttaatggttgcaagtttggcaggaagtttggctcatgtgacatgcaaggag
cccttacgtacttctatatcaagccacttgaggacttcactacaaggtttaaatatagcc
agtgaactcctagaacaagctgtgcaacttgttaccaatgacaaccttgatcttggctgt
gcagtaattgagcaggctgccactgataaggctattcaaacaattgatggggaaataact
caacagctttctttaagaagaaagcatagagaaggtgttggttcctcgttttttgatccg
ggcatgtatgcacaaggttctatgggtgctgtccctgaggccctccgccctaaaccaggg
catttgtctagtactcaacagcgagtttatgaggactttcttcgacttccttggcaaaac
caatctacacatagctcacataccgtgtctgctggtcctttgacttcatccggtgattct
agtctcaatggtgcatatggtttggcagcaggacaagtcaacccaggctactcagcaatt
gcaggaaacacagaatttgaagcaggctctcgctcgtcggatgtttcttctgggtcaatt
gaaaccagttctgctgctctgttgagtgtatcatctgccaataatgtgacagctgatagt
ggtggaattcagcataattctgaaaacaattctgtctgtgcttcttttactcctacttct
ccagccccggaattactttctgtggattcaactgaatctggaaaagaaccaggaactacg
tcacaattgttaccatcacctgtcaccactgaacgctttggaagtagtgctttagaacct
tcactaagtacaagggatgcattggataaatatcatattttttcacagaagttagaagct
ttggtagtcagtgatgccacagaagctgaagttcagggagtaattgctgaggttcctgat
ataatactgagatgcatcagtcgggatgaggctgccttggctgtggctcaaaaggttttc
aagggattatatgagaatgcttcaaacagccttcattttggtgctcatcttgcaattttg
gccgccattcgtgatgtctgcaaacttgttgttaaggagctcacacgttgggttatttac
tcagatgaggatagaaagttcaacaaagatattacagttggccttattcggagggaattg
ctaaacctcgcagagtacaatgttcagatggcaaaacttatagatggaggaaggaacaag
gctgcaatggagtttgccatttcccttctacaaactttggttgcagatgaatccagagtc
atatctgaactccacaatcttgttgatgcattggcaaaggttgctgcaaagcctggttct
tccgagtcattacaacagttgattgagattgttaagaatcctattgttaatgtaactgct
tctggtgctgctgctgggatggaggataagattaggcaatccaaagacaaaaaggctctt
agtctctccacagcaaacagggaagattataatagcatggagcctgcagaccctgatcct
gctggttttttcgatcaggtgtatgttttgttcaaggagtggtaccacatatgtgaactt
cctggcacaaatgatgcagcttgtactcgttacatcttgcagttgcatcaaaatggtctg
ctgaaaggggatgatatgacagatcgttttttccgaaaccttacgaaaattgctgttgaa
catagcatacaatctgaatcccctcaacaagtgcaatctgtctccttccatactattgat
agttatgcaaagcttgttttatcaatcctgaagtatttgcctggggagcagggatcaatt
aaaattattcttttgtcaaagattttgacagtcactgtaagatttattcaaaaagatgag
gaggagaagaaggcatcttttaatccaagaccatattttagattgtttataaactggctg
ctagaccttggcttactggatcctgccattgatgttgcaaactttcagattttgacagcc
tttgcaaatgcattccatgctttgcagccccttaaagtgcctgcattcagctttgcatgg
cttgaattagtgagtcacaggagtttcatgcctaaattgctcataggaaattctcaaaag
ggttggccatatatccaacgtttgctggtagatctgctccagttcctggagccgtttctt
aggaatgctgaactgggagttccggttcgctttctgtataaaggtacacttagagtgctg
ctggtactcctccatgatttcccagagttcctatgtgattatcatcttactttttgtgat
gtgattcctccaagctgcatacaaatgcgcaatattattctcagtgcttttccccgcaat
atgaggctaccagatccttctactcccaacttaaagattgatttgcttccggaaattaga
gatcctccttgtattctttctgaagttgatgcggctcttagagcaaaacagatgaaggct
gatgtagatgagtatctcaagactggacagccaggttcctcgtttttgtctgaactgaag
cagaaacttctccttcctcctagtgaagttgccactgctggtactcgttacaatgtacca
ttgatcaactctcttgtgctttatgtaggcatgcaggccatccagcaacttcagacaaga
acaccacattcacagtcaacaggcaacaatagttcgcttactgtgttcttggtgagtgct
gccttggatattttccagacgttgatacaggatctagatacagaagggcgctatctcttc
ttaaatgcggctgctaaccaacttcgctatccaaacaatcacacccattatttttccttt
gtcttactttatctgtatgcagaagcaaaccaggaaatcattcaggagcaaattacaaga
gttctacttgaacgccttatcgtcaatcgacctcatccatggggccttcttattacattc
atagagctgataaagaatcctagatacaacttctggaaccagtccttcattcggtgcgca
ccggagatcgagaaactctttgaatcggttgctagatcatgcgggggtctgaagcctatg
gaagatagcatggtttcaggttgggtttctgacaacacacactga
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integrated database retrieval system
