Mangifera indica (mango): 123223085
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Entry
123223085 CDS
T07684
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
minc
Mangifera indica (mango)
Pathway
minc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
minc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123223085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
minc03019
]
123223085
Messenger RNA biogenesis [BR:
minc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123223085
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123223085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
123223085
NCBI-ProteinID:
XP_044502087
LinkDB
All DBs
Position
8:463962..482907
Genome browser
AA seq
2405 aa
AA seq
DB search
MLGLSSLIPSQIRFLFQSLTEANADSVLRELCQFIEYGMAEGIIMLQTCLDHLNLHGTDS
RNPQLESIVASVLKYIMDKPNFGTVFCESLRSTEINEQLLENLSNVLHLSVSERIGIGFA
MSDSENLDVVMCGKNYCMAQIEKLCANPVPVNSAEQIQNIVMFLQRSSDLSKHLDSLMQM
LSLVQLKDLTEFALTPVLPDDLRDAKCLREIDLYHECIDNDFDDILAEMEKEMSMGDVMK
ELGYGCTVDATQCKEILSLFLPLTEINLSKILGTITRTHAGLEGNHSTLSTFGLALGCDI
HSDLPPLSSWNVDVLVKTIKQLAPSTNWTQVMENLDYDGFYIPNEEAFSFFMSVYKYACQ
DPFPLHAICGCVWKNAEGQLSFLKYAVTAPPEIFTFGHSARQLTYVDAVHGHKLQLGHAN
HAWLCLELLDVLCQLAERGYASFVQSILEYPLKNCPEVLLLGLAHINTTYNLIQCEVSFT
VFPMIIKSTMGNGMILHLWHVNPNLVLRGFIDTHNTEPDSLIRILDICQELKILSSVLEM
VPSLSAIRLAVLASQKEFVDLEKWLSGNLSTYKDFFFEECLKFVKEIQFVRTKDFSAKPF
LHSGALLNLYMKKITTIMKVLKLHTGLISSTKLLDELEKLHATILDSTPKLQNSGASESS
ATDGYADDIETEANSYFHQMFSGHLTIEAMVQMLAQFKESSVKREQSIYECMIANLFEEY
RFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE
QFVDRLIEWPQYCNHILQISHLRSTHSELVAFIESALARISAGHLEPDATNSASSIHQLG
SSQTTSGNGEVNSSSIAQSGPQHSTQIQFQLRNESSLDERHKVSSASSNDVKPLPSSTGQ
PSVVPLGDNSSVQKLQNTISASAMLSASPGFVRPSRGVTSTKFGSALNIETLVAAAERRE
TPIEAPASEIQDKISFIINNISALNIEAKARECTEILKEQYYPWFAQYMVMKRASIEPNF
HDLYLKFLDKVNSKALNKEIVQATYENCKVLLGSELIKSSAEERSLLKNLGSWLGKLTIG
RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLA
EIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQ
MIPEVKPGIISALNQVELPLDVASPPNSVGPTQLLSQYAAPLRLSSGTLMEDEKLAALGL
SDQLPSAQGLFQATQSHTPFSVNQLSTPIPNIGTHVIINQKLSASGLHLPFQRVVPIVMD
RAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK
EPLRASISSHLRTSLQGLNIANEILEQAVQLATNDNLDLGCAVIEQAATDKAIQTIDGEI
TQQLALRRKHREGVGSSFYDPSMYAQGSMGVVPEALRPKPGHVSVSQQRVYEDFVRLPWQ
NQSNQSSHVMPAGSLTSSNDVGLTGGYSLAAGQVNPGYSASAGNTEFKAVSRSLDVSSGS
IAASSAALLSVSSANIVMADSGGIQHNSENDSVNASFTPPAPAPEFLSVDSTESVKESGA
AASQSLPSPVTPERLGSSTLEPSLSTRDALDKYHIVAKRLEALVASDATEAEIQGVISEV
PEIILRCISRDEAALAVAQKVFKGLYENASNSLHVSAHLAILAAIRDVCKLVVKELTRWV
IYSDEDRKFNKDITVGLIQSTLLNLAEYNVQMAKLIDGGRNKAAMEFTISLLQTLVTDES
RVISELHNLVDALAKVAAKPGSSESLQQLIEIVRNPVANTTTGMEDKARQSKDKKVPSQD
YNSIEPADPDPAGFSDQVYVLFKEWYHICELPGTNDAACTRYILQLHQNGLLKGDDMTDR
FFRNLMKIAVEHSIQSESLQQVQSVSFHAIDSYAKLVITILKCLPVEQGSSKIFLFFSKI
LTVTVRFIQKDEEKKASFNPRPYFRLFINWLLDLGSVEPAIDGSNFQILTAFANAFHALQ
PLKVPAFSFAWLELLSHRTFMPKLLIGNSQKGWPYFQRLLVDLLQFLEPFLRNAELGVPV
RFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPCNMRLPDPSTP
NLKIDLLPEIRDSPRILSEVDAALRAKQMKADVDEYLKTGQPGSSFLTELKQKLLLPPSE
VAAAGTRYNVPLINSLVLYVGMQAIHQLQTRTPHAQSTGEDGSLAVFLVSAALDIFQTLI
QDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIREQITRVLFERLIVN
RPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKMFESVARSCGGLKPVEDGMVSGWV
SDNTH
NT seq
7218 nt
NT seq
+upstream
nt +downstream
nt
atgcttggcctttcatctttgattcctagccagattcggttcttgttccaaagcttgacc
gaagcaaacgccgattctgtattgcgagagctctgtcagtttattgaatatggaatggcg
gaaggcattattatgcttcaaacttgcttggatcacttgaatcttcatggaactgactca
aggaacccgcagcttgaatcaattgtagcatcagttctcaaatacatcatggataaacca
aatttcggtactgtattctgtgagtcactaaggagtactgaaatcaatgagcaactgctg
gagaatttatcaaatgtgttacatttatctgtatctgaaaggattgggattggttttgcg
atgtctgattcagaaaatcttgatgtagtaatgtgtgggaagaactattgtatggctcag
attgagaagttatgtgccaatcctgttcctgtgaattctgctgagcaaattcagaatatt
gttatgttccttcagcggtcaagtgacctttccaagcatctagattctcttatgcagatg
ttgtctttagtgcaattgaaagaccttacagaatttgccttaactccagtgcttcctgac
gatctgcgtgatgctaagtgtttaagagaaattgatttgtaccatgaatgcatagataac
gattttgatgatattttagctgaaatggaaaaggagatgagcatgggagatgttatgaag
gaactaggatatggatgtacggttgatgccactcagtgcaaagagattctttctcttttc
ttaccattgactgagattaacctttctaagatacttggcacaatcacacgtactcatgct
gggctggaaggcaatcatagcacattgtcaacatttggcctagcccttggttgtgacatt
cattctgatctgccacccttaagctcctggaatgttgacgtccttgtgaaaacgatcaag
caacttgcacctagcaccaactggactcaagttatggagaacctggattatgacggtttc
tacatcccgaatgaggaggccttctcttttttcatgtctgtatataaatatgcatgccag
gatccattcccccttcatgccatctgtgggtgtgtttggaagaatgctgagggccagtta
tcttttcttaaatatgctgtaactgcgccaccagaaatatttacctttggtcattctgca
aggcagctgacttatgttgatgcagtgcatggccataagcttcaacttgggcatgcaaat
catgcttggttgtgccttgaacttctagatgtgctctgccaactagctgagaggggttat
gctagctttgtacaatcaattctcgagtatcctctcaaaaactgccctgaagtcttgctt
cttggattggcacacattaatacaacttataatctcatccagtgtgaagtatctttcact
gttttcccaatgataattaaaagtaccatgggcaatggaatgattctgcacctttggcat
gtgaatcccaatcttgtattgcggggattcatagatactcacaacacagaacctgacagc
ttgattagaatattagacatatgtcaggagctgaagatcttatcatcagttctagagatg
gtcccttctctttctgctatcagattggcagttctcgcttcacaaaaagaatttgtagac
cttgagaagtggctgagtggtaacttaagtacatacaaggattttttctttgaggagtgc
ctcaagtttgtcaaagaaatccagtttgttagaacaaaggatttttcggccaaacctttc
cttcattctggtgctctattgaatctttacatgaagaagatcaccactattatgaaggtt
ttgaaattacatactggcttgatttcttcaaccaaactccttgatgaactggaaaagttg
catgcaacaatcttggattctactccaaaactacaaaatagtggagcttcagaatcatca
gcaactgatggatatgcagatgatattgagacagaagcaaactcttactttcatcaaatg
ttctctggtcatttgactattgaagcaatggttcaaatgcttgcacaattcaaggaatct
tcagtgaaaagggaacaatcaatttatgagtgcatgattgcaaacttgtttgaggaatac
aggttctttccaaagtatcctgaaaggcagctcagaattgctgctgttctatttggctcc
attataaagcatcaacttgtaactcatctcacccttgggattgccctgcgtggcgtttta
gatgcgttgcgtaaacctgctgattctaaaatgtttgtgtttggtacaaaagcattggag
cagtttgtggatcgtctgattgaatggccacagtattgcaaccatattttgcaaatatct
cacctgcgtagtacacattcagagctggttgctttcattgaaagtgctcttgccaggatt
tcagctgggcatttggaaccagatgcaaccaatagtgcttcaagtattcatcagcttggt
tcttctcagactacctcaggaaatggggaggttaatagttctagcattgcacaatctggg
ccacaacattctactcaaattcagtttcaattgagaaatgaaagttctcttgatgagcgt
cataaagtttcttcagcttcatcaaatgatgtaaaacctcttccatcttccactggacaa
ccttctgttgttccattgggtgataattctagtgttcagaagttgcaaaatacaatcagt
gcttcagcaatgctgtcagcttctcctggttttgttcgtccttcccgaggagttacatca
actaaatttggctctgctttgaacattgaaacactagttgctgctgctgagcgaagagag
actcctattgaggctccagcatcagagattcaggacaagatatcatttataatcaataat
atatctgctctaaatattgaggccaaagctagagaatgcactgaaatattgaaggagcag
tactatccatggtttgcacagtatatggttatgaaaagagcgagcattgaaccgaatttt
cacgatttgtacttaaagtttcttgataaagttaattcaaaggctttgaacaaagagatc
gtccaggccacatatgaaaactgcaaggttctattaggatcagagcttataaaatcaagt
gcagaagagcgttcattgcttaaaaatttgggtagctggcttgggaagttaacaattgga
agaaaccaagttttaagggctcgtgaaatagaccctaaatcactgattatagaggcatat
gagaagggattgatgattgccgttattccatttacctccaagattctcgaaccatgccaa
agtagtctagcatatcaacctccaaatccctggactatgggaattcttggattacttgct
gagatctattcgatgccaaacctgaaaatgaaccttaagtttgacatagaggttctattc
aagaaccttggagtggatatgaaagacataacaccaacttctcttctcaaggaccggaaa
agagaaattgaaggaaatcctgacttctctaataaagatgttggagcatcccagcctcag
atgattcctgaagttaaaccaggaattatttctgcactaaatcaagttgaattaccactt
gacgttgccagcccacctaattctgtgggccctacgcaattattatctcagtatgctgct
cctcttcgtctttcttctggtactttgatggaggatgaaaaattagctgctcttggcttg
tctgatcagcttccttctgctcaaggactgtttcaagctactcaatcccacacacccttt
tctgttaatcagctttccaccccaatacctaacattggaactcatgttatcatcaaccaa
aagcttagtgcctcgggcttgcacttgccctttcagagagtggttccaattgtgatggac
agagctataaaagagatagtatcaggcattgttcagcgaagtgtttctatagcaactcaa
acaacaaaagagcttgtgttaaaggattatgcgatggaatcagatgagacacgcatctat
aatgcagcacacttgatggttgcaagtttagcaggaagtctagctcatgtgacatgcaag
gagcccttacgtgcttctatatcaagccacttgaggacttcactgcaaggtttaaatata
gcgaatgaaatcctagaacaagctgtgcagcttgctaccaatgataatcttgatcttggc
tgtgcggtcatcgagcaggctgctacagataaggcaattcaaactattgatggagagata
actcaacaacttgctttaagaagaaagcatagagaaggtgttggctcctcattttatgat
ccaagcatgtatgcacaaggttctatgggtgttgttcctgaggccctccgccctaaacca
gggcatgtgtctgtttctcaacagcgagtttatgaggattttgttcgacttccttggcag
aaccaatctaatcagagctcacatgtgatgcctgctggttctctgacttcatccaatgat
gttggtctgacaggtggatatagtttggcagcaggacaagtcaacccaggctactcagca
agtgctggaaatacagaatttaaagcagtgtctcgctcattggatgtttcttctgggtca
attgcagctagttcagctgcactgttgagtgtatcatcagccaatattgtgatggctgat
agtggtggtattcagcataattctgaaaacgattctgtcaatgcttcttttactccacct
gctccagcccctgaatttctttctgtggattcaactgagtctgtaaaagaatcaggagct
gctgcttcacaatcattaccatcacctgttacccctgaacgccttggaagtagcacctta
gaaccttcactaagcacaagggatgcattggataaataccatattgttgcaaagaggtta
gaagctttggtagccagtgatgccacagaagctgaaattcagggagtaatttctgaggtt
cctgagataatactcagatgcatcagcagggatgaggctgccttggctgttgctcaaaag
gttttcaaggggttatatgagaatgcttcaaacagtcttcatgttagtgctcatcttgca
attttggcagccattcgcgatgtttgcaagcttgttgttaaggagctaacccgttgggtt
atttactcggatgaagacagaaagttcaacaaagatattacggttggccttattcaaagt
acattgctaaaccttgcagagtacaatgttcaaatggcaaaacttatagacgggggaaga
aacaaggctgcaatggaattcaccatttcccttctacaaactctggttacagatgaatcc
agagtcatttctgaactacacaatcttgtagatgcgttagctaaggttgctgcaaaacct
ggttcttcggagtcactacaacagttgattgagattgttaggaatcctgttgctaataca
actactggaatggaggataaggctaggcaatccaaagacaaaaaggttcccagccaagat
tataacagcatagagcctgctgatccagatcctgctggtttttctgatcaggtctatgtg
ttgttcaaggagtggtaccacatatgtgaacttcctggcacaaatgatgcagcttgcact
cgttatatcttacaattgcatcaaaatggactgctcaaaggggatgatatgacagatcgt
tttttccgaaaccttatgaaaattgctgttgaacatagcatacaatctgaatcacttcaa
caagtgcagagtgtatcctttcatgccattgatagttatgcaaagcttgttataacaatc
ctgaagtgtttgcccgtggaacaaggatcgagtaaaatctttctgtttttttcaaagatt
ctgaccgttacagtaagatttattcaaaaagatgaggagaaaaaggcatcttttaatcca
agaccctattttagattgtttattaactggctgctagaccttggttcagtggaacctgct
attgatggctcaaactttcagattttgacagcctttgcaaatgcattccatgctttgcag
ccccttaaagtcccagcattcagctttgcatggcttgaattgctgagtcacaggactttc
atgcctaaattgctcataggaaattcccaaaagggttggccttatttccaacgtttgttg
gttgatctgctccaattcctggagccattcctgaggaatgccgaactcggagttccggtt
cgatttctgtataaaggtacacttagagtgctgctggtactcctccatgatttcccagag
ttcctgtgtgattatcattttaccttttgtgatgtgattcctccaagctgcatacaaatg
cgcaatattatcctcagtgcttttccctgtaatatgaggctaccagatccatcaactccc
aacttaaagattgatttgcttccggaaatcagagattctcctcgtattctctctgaagtt
gatgcggctcttagagcaaaacagatgaaggctgatgtagatgagtatctcaagacggga
cagccgggctcctcatttttgactgaactgaagcagaaattgctccttcctcctagtgaa
gttgccgctgctggcactcgttacaatgtaccattgatcaactcccttgtgctttatgtt
ggcatgcaggccatccaccaactgcagacaagaacaccacatgcacagtcaacgggcgaa
gatggttcactcgctgtgttcttggtcagtgctgccttggatattttccagacattgata
caggatctagatactgaagggcgctatctcttcttaaatgcagctgcaaaccagcttcgc
tatccaaacaaccacactcattatttttcctttgtcttactttatctatatgcagaagca
aaccaggaaattatccgggaacaaattacaagagtactgtttgaacgtcttattgtgaat
cgacctcatccatggggcctcctcataaccttcatagaactgataaagaaccccagatac
aacttctggaaccagtctttcattcggtgtgcgccagagattgagaaaatgtttgaatca
gtggctagatcatgcggcggtctaaagcctgtggaagatggtatggtctcagggtgggtt
tctgacaacacacactga
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integrated database retrieval system
