Macadamia integrifolia (macadamia nut): 122082183
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Entry
122082183 CDS
T07436
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122082183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122082183
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122082183
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122082183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Glyco_hydro_84_hel
Motif
Other DBs
NCBI-GeneID:
122082183
NCBI-ProteinID:
XP_042505593
LinkDB
All DBs
Position
6:26773652..26801341
Genome browser
AA seq
1988 aa
AA seq
DB search
MLPFSSTVSNQIRFLLQSLNDSNSDSIVRELCQFTEYGSEGIILLLQTCLDHINFHGGNL
ENIPPKPDFLAAIFRYLLDKPNFSTVLCEALRSTTINEAFLGDFCNALRLSVSEKIGIGL
ALSDSENPDIRTCGQNFCMSHIEELCAHPTSFDPHGQIQNIVMFLHRSEGLAKHMDSFMR
MLSLLQLKDIPTFILDPFLSDDLRVADSLRHLDLFYESNQNDFDSVLAEIEKEISMADVV
KELGYGCTINASHCQDVLSLFLPLTEGTLSRILSTIARTHNGLEDCQNAYSIFCSALSGN
SIPESPCLNYWNVDILVDSIKQLAPGTNWVSVMENMDHEGFYFPSEEAFSLFMSVYANAC
QDPFPLHAICGSVWKNAEGQLSFLRYAVSAPPEIFTFAHSARQLAYVDAVHGHKLLQGNE
NQAWLCLDLLEVLCHLAERGHAGSVRTILEYPLKNCPEVLLLGMAHINTTFNLLQYEVSS
TVLPMIIGNAMKIGVVLHLWHVNSNLLVRGFTDVLFADQEHMTRILGCCLELKIVSAVLD
ITPFSFSIKLAALASLKEQINLEKWLNDNLSTHKDVFFEECLKFLREIPFDTTNDPANPF
QHSGGVVNAYLETSSTFFKVLQAHSAQMTSNQLAEEMKKLHLASMHATPRLQSGGAVEST
SDGYGDDIEAEANSYFHQMFSGQLTIDAMVQMLARFKESPDKREQSISECMIANLFEEYK
FFPKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRGVLDALRKSADSKMFIFGAKALEQ
FVDRLVEWPQYCNHILQISHLRGTHSELVAFIERALARISSGHTESNGVNSTSNDQPQGS
AQATSENLEASDSSWQLLGSNFTQPGQQVSTPLQLQQRHQGFLDDRHKASITSVSYMKPL
PSPAGQPLLVSNHDAVGNQKSILSQPLQTHPSQNVGSGPAAVSSSPGFLRSSRGITSTSM
LRQSYNTGFGSALNIETLVQAAERRDTPIEAPASEIQDKILFIVNNISTTNLEAKAKEFT
EILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLEKVNSKDLNKEIVKATYENCKVLLRS
ELIKSSSEERSLLKNLGSWLGKFTIGRNQALRAREIDPKVLIIEAYEKGLMIAVIPFTSK
ILEPCQCSLAYQPPNPWTMGILSLLTEIYALPNLKMNLKFDIEVLFKNLGVDMKDVKPTS
LLKDRLREVEGNPDFSTKDIGASQPQMVAEVNSGMISALNQVELQPEVSAPSHPAGHSNV
LSQHTASLHLASGSLGEDEKMANLSLSDRLSTGQGPSQASPSQSPFSVSQLSASILNIGS
HVVINPKLSALGLQMHFQRIVPMAMDRAIKEIMSPIVQRSVTIAMQTTKELVLKDYAMES
DESRIYHAAHLMVASLAGSLAHVTCKEPLRGSISMHLRNLLQALSIASEILEQAVLLVTN
DNLDLGCAVIEQHATEKALGTIDGEISQLLSLRRKHREGVGPSYFDANTYTQGPMGVVPE
ALRPKPGRLSLPQQRVYEDFVRFAWQNQSNQSSNAVPASPPASSGVSFSSGMSRAYGSTM
GQLNQGVYSSGQGAQGFGAVAQPMDLMSDEMDPGSQQLISASSTLIGAPDGVIQHGSEIN
SVVAPFPSTVAVPELLSLEPSSAVKELGANAQPSPPLSATERLGGGVSESLLTTGDALEK
FQFVAQKLETLVAKDAKEAEIQGVIAEVPEIILRCISRDEAALAVAQKVFKSLYENASNS
LHVGAHLTILVAIRDVCKLVVKELTSWVIYSDEERKFNKDIAVGLIRSELLNLAEYNLHM
AKLIDAGRNKTATEFAISLLQTLVVQEPGVSVSELHNLIDALAKLAMRPGSPETLQQLVD
IARNPAANSAALSILTAGKEDKARQAREKKQSPGRSMAIREDYTNAESMAADPAGFREQV
TVLFGEWCRICELPGANDAAYTHYISQLQQSGLLIGDDISDRFFRIQTVFFLTSLELCLG
ISDGIYGR
NT seq
5967 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttctcttcaacggtttcgaaccagattcggttcttgcttcagagcttgaac
gactccaactccgattcgatcgttcgcgagctatgtcagtttactgagtatggaagtgag
ggaatcatattgctgcttcagacctgcttggatcacataaattttcatggcgggaacttg
gagaacattcctccaaaaccagattttcttgctgcaatatttagatatttgttggataaa
ccaaatttcagcacagtgttatgtgaagcattaagaagtacaaccatcaatgaggctttt
cttggagatttctgtaatgcattacgcttgtcggtatctgagaaaattggcattggtctt
gctttatcagattctgaaaacccggatatcagaacatgcggtcaaaatttctgcatgtcc
catattgaggaattgtgtgcccatcccacatcttttgatcctcacggacaaattcagaat
attgtcatgttcctgcatcgatcagagggccttgccaagcacatggattcctttatgcga
atgctatccttattgcaattgaaagatatccctactttcatattagatccatttctgtca
gatgatttacgggtggctgattctttgaggcatttggatctattctatgagtccaatcaa
aatgattttgattctgttctagcagagattgagaaggaaattagcatggcagatgttgtg
aaggaacttggctatggttgcactattaatgcgtcgcattgccaagatgttttatccctt
tttctaccactgactgaggggaccctttctcggatacttagcacaattgcacgcactcat
aatggtcttgaggactgccagaatgcatattcaatattttgctctgcgcttagtggcaac
tcaatacctgagtcaccatgtttgaactattggaatgttgatatccttgtagattcaatt
aaacaacttgctccaggaactaattgggttagtgttatggaaaacatggaccatgagggg
ttctatttccccagtgaggaggcgttttcccttttcatgtctgtttatgcaaatgcatgc
caggatccgttcccactccatgccatatgtgggtctgtctggaagaatgctgaaggtcag
ctatctttcctaagatatgcggtttctgcaccgccagaaatattcacctttgcacattct
gcaaggcaactggcatatgttgatgcggtacatggccataagcttctgcagggaaatgag
aatcaggcatggttgtgtcttgaccttttggaggtgctatgtcacctagccgagagaggt
catgctggctctgtgagaacaattcttgagtatccacttaaaaactgccctgaggtcttg
cttcttgggatggcccatattaatactacatttaaccttctccaatacgaagtatcctca
actgttcttcccatgataattggcaatgcaatgaaaattggagtggttcttcatctgtgg
catgttaattcaaatctgttggtccgtggctttacagatgttctttttgctgatcaagaa
catatgaccagaattctgggctgttgcctagagctgaagattgtatcagcggtattggac
ataacacctttctcattcagtattaaactggctgcccttgcttctctgaaagagcaaata
aatctggagaagtggttgaatgacaatctgagcacacataaggatgtcttttttgaggaa
tgcctcaagttcttgagggagataccctttgacacaacaaatgatcctgccaacccattc
cagcattctggtggtgtggtgaatgcctatttagagacaagttcaacatttttcaaggtc
ctgcaagctcattcggcacagatgacttctaaccagcttgccgaggaaatgaagaagttg
catttagcatccatgcatgccactccaagactgcagagtggtggagctgtggagtcgaca
tctgatggttatggagatgatattgaggcagaggccaactcttacttccatcaaatgttc
tctggtcagctgaccattgatgcaatggttcaaatgcttgctcgcttcaaggaatctcct
gataaaagggagcaatcaatttctgagtgcatgatcgcaaatttatttgaggagtacaaa
ttctttccaaagtatccagaaagacaacttaagattgctgcagttctctttggttcccta
ataaagcatcagctggtgacccatcttacccttggtattgccctccgtggagtcttggat
gcactgcgtaaatctgccgattccaaaatgttcatatttggggccaaagctttggagcag
tttgtggaccgtttagtggaatggccacagtattgtaatcatatcttgcaaatatctcat
ctgcgtggcacccactcggaacttgttgcattcattgaacgtgctcttgcaaggatctca
tcaggccatacagaatcaaatggggtgaacagtacatctaatgatcagcctcaaggttct
gcccaggctacttcggaaaatttagaggcatccgactcttcatggcagttactaggatct
aattttacacaacctgggcaacaagtctccaccccacttcagctgcaacaaagacatcaa
ggttttcttgatgacaggcataaagcctccataacttcagttagctatatgaagccgctt
ccttcccctgctgggcagcctttacttgtttccaaccacgatgctgtgggcaatcagaag
tcaatactctcgcagcccttgcagacgcacccttcacagaatgtgggaagtggtccagca
gctgtgtcatcttcacctggttttctgcgctcttcccgggggatcacatctactagtatg
cttagacaatcatataatacagggtttggttctgctttgaacattgagacactcgttcaa
gctgctgagagaagggacactcctatagaggcacctgcgtcagagattcaagataagata
ctgtttattgtcaataatatttcaactacaaatcttgaagctaaggcaaaagaatttact
gagattctgaaggagcagtactacccatggtttgcacagtatatggtgatgaaaagagcg
agcatcgagccaaatttccatgatctctacttgaagttcttagagaaagttaattcaaag
gatttgaataaggaaatcgtgaaagcgacttacgagaactgcaaggttcttctaagatca
gagcttataaaatccagttcagaagagcgttctttgctgaaaaatcttggtagctggctt
gggaagttcacaattggaagaaatcaagcattaagggctcgggaaatagatcccaaagtc
ttgataatagaggcatatgagaagggattgatgattgcagtgatcccctttacctcaaag
attttggaaccatgccagtgcagtctagcatatcaacctcccaatccttggacaatggga
atccttagtttgctgaccgagatctatgcattgccgaatttaaaaatgaacctcaaattt
gatatagaggtcttgtttaagaatcttggtgtggatatgaaagatgtaaaaccaacttct
cttcttaaagaccggcttagggaagttgaaggaaatccggatttttcgacaaaagatatt
ggagcatcccagccacaaatggttgccgaagttaactctggaatgatatctgcattaaat
caagttgaacttcagcccgaggtttccgctccatctcaccctgctggtcattcaaatgtt
ttatctcagcatactgcttctcttcatcttgcttcgggttcattgggggaggatgaaaag
atggcaaacttaagcttatctgatcgactttctactggtcaagggccgtcacaagccagt
ccatcccagtcacctttttctgtcagtcagctctcagcttcaatccttaatattggatct
catgttgttatcaaccctaagcttagcgccttgggcctccagatgcattttcagagaatt
gttccaatggcaatggatagggctatcaaagagataatgtcccctattgttcaacgtagt
gttactatagcaatgcagacaacaaaggaactggttttaaaggactatgccatggagtcg
gatgagagccgtatatatcatgctgcacacttgatggtagcaagccttgcaggaagttta
gcgcatgttacatgcaaggaacctcttcgtggttcaatttccatgcacttgaggaatttg
cttcaggccttaagcattgccagtgaaattcttgaacaagctgtgctacttgttacaaat
gataatcttgatctgggttgtgctgtgattgagcaacatgcaacggaaaaggctctgggt
acaattgatggggaaatatctcaactactttctttgaggaggaagcacagggagggtgtt
ggtccaagttattttgatgcaaatacgtacacgcaaggtcctatgggcgtggtaccagag
gccttgcgaccgaaacctggtcgcttgtcccttccccaacagagagtttacgaggatttt
gttaggtttgcgtggcaaaatcaatcaaaccagagctcaaatgcggtgcctgcttcccca
cctgcttcatctggcgtctcttttagttcaggaatgtctcgtgcttatggttccactatg
gggcagctcaaccaaggtgtctactcatctgggcaaggggcacaaggatttggtgcagtt
gcacagcccatggacctaatgtctgatgagatggaccctggttcacaacaactcataagt
gcttcctcaactcttattggagcacctgatggtgttattcagcacggttctgaaatcaac
tctgttgttgctccatttccttcaactgtggcagtcccagaattgctttcattggaaccc
tcttctgctgtaaaggaattgggagctaatgcacaaccatcacctcctctgtctgccacg
gagcgcttgggaggtggtgtatcagagtctttgttgaccacgggagatgcattggagaag
ttccagtttgtggctcaaaagctggaaactttggtcgccaaagatgccaaagaagcagaa
attcagggtgttattgctgaggttcctgaaattatactcagatgtataagtcgagatgag
gctgcattggctgtggctcaaaaggtttttaagagtttatatgagaatgcttcaaacagt
ttacatgttggtgcacatcttacaattctggtggctattcgagatgtttgcaagcttgtt
gtcaaggaactcacaagctgggtgatttactcggatgaggagcgcaagttcaacaaggat
atagctgttggtctcattcgcagtgaattactaaatcttgcagagtacaatttacacatg
gcaaagcttattgatgcaggaaggaacaaaactgctacagagtttgccatttctcttctc
caaacgttggtggttcaggaacctggtgtcagtgtgtcagaactccacaatcttattgat
gccttggcaaagcttgcaatgaggcccggatctcctgaaactttacagcagttggttgac
attgccaggaatcctgctgctaattcagctgcattgtctattttaactgctggcaaggag
gataaggctagacaggcccgggagaaaaagcagtctcctggtcgctccatggctatcagg
gaagattataccaatgctgaatctatggcagcagatcctgctggtttccgtgaacaggtt
acagtgctgtttggtgaatggtgtcgaatttgtgaacttcctggtgcaaatgatgcagct
tatacccattacatttcacaattacaacaaagtgggttgcttataggggatgatatatca
gatcgctttttccgtatccaaacggtattttttcttacatctttggaactttgtttggga
atcagtgatggaatttatggtcgatga
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