Macadamia integrifolia (macadamia nut): 122086052
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Entry
122086052 CDS
T07436
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
ming
Macadamia integrifolia (macadamia nut)
Pathway
ming03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ming00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122086052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ming03019
]
122086052
Messenger RNA biogenesis [BR:
ming03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122086052
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122086052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
122086052
NCBI-ProteinID:
XP_042510676
LinkDB
All DBs
Position
8:24523441..24579001
Genome browser
AA seq
2460 aa
AA seq
DB search
MLPFSSTVSKQIRFLLQSLDDSNFDSVVRELCQFTDYGSEGSILLLQTCLDHINFHGGDM
QNIQLKPDFLAAIFRYLMDKPNFSTVFCEALRSTSINEAFLGDFFNVLRFSVYEKIGIGL
ALSDSENLDIRTCGQNFCISQIEELCAHPTSFDFHGQMQNIVSFLHRSEGLAKYVDSFMR
MLSLMQLEDMTSFILDPYISDDLHGDLHGADSLRHLDLFYDTNENDFDAVLAEIEKEISM
ADVMTELGYGFTINAAHCKEVLSLFLPLTEGTLSRILGTIARTHSGLEDSQSTYSIFCSA
LSGSSVPDLPCLNSWNVDVLVDSIKQLAPGTNWVSVMENLDHEGFYFSDEEAFSFFMSVY
ANACQDPFPLHAICGSVWKNAEGQLSFLRYAACAPPETFTFGHSARQLGYVDAVHGHKLP
QGNANQAWLCLDLLEVLCHLAERGHAGSVRTILEYPLKNCPEVLLLGMAHINTAFNLLQY
DVSSTVLPMIIGNAMNSGVFLHLWHVNPNLLVRGFIDIHFADPENMTRILGICQELKIVS
AVLDITPFSFSIKLAALASREEHINLEKWLNDNMSTHKDVFFMECLKFLREIPLDTAEDP
ANPFQHSGGVVNAYLESNSTFFKVLQAHASQITSNLLADEMKKLHLASMHGNPRLQNGGV
AESASDVYAADIEAEANSYFHQMFSGQLTIDAMVQMLARFKESTDNREQSIFECMIANLF
EEYKFFPKYPERQLKIAAVLFGSLIKHQLVTHLTLGIALRGVLDALRKSADSKMFIFGAK
ALEQFVDRLVEWPQYCNHILQISHLRGTHAELVAFIERALARISSGHVESSGVNSISNDQ
PQGSSQDTLDNVEASDSSWPLMGSNATQPGQQLSSPLQPQQRHQGFLDDRHKASATSVGY
LKPTLPSGQPSLVATHDAVTNQKSTASQPVQMVPSQNVGSGPAAVSSSPGFLRSSRGIMP
TSMLRQHSYNTGFGSALNIETLMQAAERRDTHIEAPASEIQDKILFIVNNISTANLEAKA
KEFTEILKEQYYPWFAQYIVMKRASIEPNFHDLYLKFLEKVNSKPLNTEIVKATYENCKV
LLRSELIKSSSEERSLLKNLGSWLGKFTIGRNQSLRARELDPKVLIIEAYEKGLMIAVIP
FTSKILEPCLCSLAYQPPNPWTMGILSLLTEIYALPNLKMNLKFDIEVLFKNLGVDMKEV
KPTSLLKDRIREVEGNPDFSTKDIGASQPQMVAEINSGVISTLNQVELQPEVSTSSHLGG
HSNALSQYTGPLHLASGSLVEDEKMANLNLSDRLSTGQGLSQVTPSQSPFSVSQLSTSIP
NIGAHVVINPKLNALGLQLHFQRIVPMAMDSSIKEIMSPIVERSVTIAMQTTKELVLKDY
AIESDESRIYHAAHLMVASLAGSLAHVTCKEPLRGSISTNLRNLLQALNIASEILEQAVL
LVTNDNLDLGCAVIEQHATEKALSTIDGEIGQQIALRRKHREGVGPTYFDASTYTQGTMG
IVPESLRPKPGRLSHSQQRVYEDFVRFAWQNQSNQSSNAMPAAPPASSTVSVSSGLSRAY
GSSTGQLNQGVYSSGQGVQGFGAVAQPMDLMPEEMDPGSQQLLSASSTHIGAPDGIVQHG
SEINSVVASFPSTAAAPELHLVEPSTAVKELGPNAQSSTPTSATERMGVGITESLLTTGD
AIEKYQLVAQKLETLVTKDAREAEIQGVIAEVPEIILRCISRHEAALAVAQKVFKSLYEN
ASNSVHVGAHLAILVAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIRSELLNLAEY
NVHMAKLIDAGRNKTATEFAISLLQTLVVQEPGVSVSELHNLVDAVAKLAMRPGSPESLQ
QLVEIARNPAANSAASSGLTVGKEDKARQAREKKVPGRTIVIREDYANAESMAADPAGFY
EQVSLLFGEWCRICELPGANDAAYTHYISQLQQSGLLKGDDMSDRFFRILTELSVAYCVS
TEVSPASLSLQPHHSQQISFFAIDMYAKLIFLMLKYHAVDQGSNKLFLLPKILSVTVRVI
QKDAEEKKASFNPRPYFRLFINWLYDLSSPDTVLDGANFQVLTAFANAFHALQPLKVPGF
SFAWLELVSHRTYMPKLLTLNPQKGWPLVQRLLVDLFKFLEPYLRNVELGEPVRFLYKGT
LRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLL
AEISQSPHILSEVDAALKAKQMKNDIDEYLKTRQQGSSFLAELKQRLLLPQSEAAQAGTR
YNVPLINSLVLYVGMQAIQQLQTRTPPPHAQPMAQGASMDIFLVGAAMDIFQTLIGELDT
EGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAEANQEIIQEQITRVLLERLIVNRPHPW
GLLITFIELIKNPRYNFWNRSFTRCAPEIEKLFESVSRSCGGPKPMDEGMVSGGISDNSH
NT seq
7383 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttctcttcgacggtttcgaagcagattcggttcttgcttcagagcttggac
gactccaacttcgattcggtcgttcgggagctatgtcagtttactgactatggaagcgag
ggaagcatattgttgctccagacctgcttggatcacataaattttcatggcggggacatg
cagaacatacagctgaaaccagattttcttgctgcaatctttagatatttgatggataaa
ccaaatttcagtacagtcttttgtgaagccttgagaagtacatctatcaatgaggctttt
cttggagatttttttaatgtgttacggttttcggtgtatgagaagattggcattggtctt
gctttgtcagattcggaaaatcttgatatcaggacatgcggtcaaaacttctgcatttcc
cagattgaggaattgtgtgcccatccaacatcttttgattttcatggacaaatgcagaat
attgtctcgttcctgcatcggtcagagggccttgctaagtatgtggattcctttatgcgg
atgttatccttaatgcaattggaagacatgacttcttttatactagatccatatatttca
gatgatttacatggggatttacatggggctgattctttgaggcatttggatctattctat
gataccaatgaaaatgattttgatgctgttctagcagagattgagaaggaaattagcatg
gcggatgttatgaccgaacttggctatggtttcactattaatgcggcgcattgcaaagaa
gtcttatccctttttttaccattgactgaggggaccctctcccggatacttggtacaatt
gcccgaactcattctggtcttgaggacagccaaagcacatattccatattctgctctgca
cttagtggcagctcagtacctgatttaccatgtttgaactcctggaatgttgatgtcctt
gtagattcaattaaacagcttgctccaggaactaattgggtcagtgtaatggaaaacctg
gatcatgagggtttctatttctccgatgaggaagcattctcttttttcatgtctgtttat
gcaaatgcatgccaggatccgttcccactccatgctatttgtgggtctgtctggaagaat
gctgaaggtcagctatctttcctaagatatgcagcttgtgcaccacctgaaacattcacc
tttgggcattctgcgaggcaattggggtatgttgatgctgtacatggccataagcttcca
caaggaaatgcaaatcaggcatggttatgtcttgacctcttggaggtgctatgtcaccta
gctgagagaggtcatgctggctctgtgcgaacaattctcgagtatccacttaaaaactgc
cctgaggtcttgcttcttgggatggcccatattaatactgcatttaaccttctccaatac
gatgtatcttcaactgttcttcccatgataattggcaatgcaatgaatagtggagtattt
cttcatttatggcatgtgaatcctaatcttttggttcgtggctttatagacattcatttt
gctgatccagaaaatatgaccagaattttgggcatttgtcaagagctgaagattgtgtca
gcggtattggacataacacctttctcattcagtattaaactggcagcccttgcttctcgg
gaagagcacataaatctggagaagtggttgaatgataatatgagcacacataaggatgtc
tttttcatggagtgcctcaagttcttgagggagatacctcttgacacagcagaggatcct
gccaatccgttccagcattctggtggtgtggtgaatgcctatttggagtcaaattcaaca
tttttcaaggtccttcaagctcatgcttcacagattacttctaacctgcttgctgacgaa
atgaagaagttgcatttggcatcaatgcatggtaacccaagactgcagaatggtggagtt
gcagagtcggcatctgatgtttatgcagctgatattgaggcagaggccaactcttacttc
catcaaatgttttctggtcagctgaccattgatgcaatggttcaaatgcttgctcgcttc
aaggaatctactgataacagggagcaatcaatttttgagtgcatgattgcaaatttattt
gaggagtacaagttcttccccaagtatccagaacgacaacttaagattgctgcagttctc
ttcggctccctaataaagcatcaactggtgacgcatcttacccttgggattgcccttcgt
ggagtcttggatgcactgcgtaaatctgctgattccaaaatgttcatatttggggccaaa
gctttggagcagtttgtggaccgtttagtggaatggccacagtattgtaatcatatcttg
caaatatctcatctgcgtggcacccatgcggaacttgttgcattcattgaacgtgctctt
gctagaatctcatcgggacatgtcgaatcaagtggtgtcaatagtatatctaatgatcag
cctcaaggttcttcccaggatactttggataatgtggaggcatctgactcttcgtggccg
ttaatgggatctaatgctacacaacctgggcaacaactctcatctcccctccagccacaa
caaagacatcaaggttttcttgatgacaggcataaagcttccgcaacttcggttggatat
ttgaagcccactcttccttctgggcagccttcacttgtcgccacacatgacgcggtgacc
aatcagaagtcaactgcttcgcagcccgtgcagatggtgccttcacagaatgtgggaagt
ggtccagcagctgtgtcatcttcgcctggttttctgcgttcttccagggggataatgcct
actagtatgcttagacaacattcatataatacagggtttggttctgccttgaacattgag
acactcatgcaagcggctgagagaagggacactcatatagaggcgcctgcatcagagatt
caagacaagatactgtttattgtaaataatatttcaactgcaaatcttgaagctaaggca
aaagaatttactgagattctaaaggagcagtactacccatggtttgcacagtatatagtg
atgaaaagagcaagcattgagccaaatttccatgatctctacttgaagttcttagagaaa
gttaattcaaaacctttgaatacggagattgtgaaagctacttacgagaactgcaaggtt
cttttaagatcggagcttataaaatccagttcagaagagcgttccttgctgaaaaatctt
ggtagctggcttggaaagttcacaattggaagaaatcaatcattaagggctcgagaacta
gatccaaaagttttgataatagaggcatatgagaagggattgatgattgctgtgatcccc
tttacctcaaagattttggaaccatgcctgtgcagtctagcttatcaacctcccaatcct
tggacgatgggaatccttagtttgcttaccgagatctatgctctcccaaatttgaaaatg
aacctcaagtttgacattgaggtcttatttaagaatcttggtgttgatatgaaagaggtc
aaaccgacttctcttcttaaagaccggattagggaagtcgaaggaaatcctgatttttca
acaaaagatatcggagcatcccaaccacaaatggttgctgaaattaactctggagtgata
tctacattaaatcaagttgagcttcagcctgaggtgtccacttcatctcatcttggtggt
cattcaaatgcattatctcagtatactggtcctcttcatcttgcttcgggttcattggtg
gaggatgagaagatggcaaatctaaacttatctgatcgactttcaactggtcaaggcttg
tcacaagtcaccccatcccagtcaccgttttctgttagtcagctttccacttctatcccg
aatattggagctcatgttgttatcaaccctaagctcaatgctttgggccttcagttgcat
tttcaaagaattgttccaatggcgatggatagttctatcaaagagataatgtctcctatt
gttgaacgcagtgttactatagcaatgcagacaacaaaggaacttgttctaaaggactat
gccatcgagtcggatgagagccgcatatatcatgctgcacacttgatggtggcaagcctc
gcaggaagcttagcacatgttacatgcaaggaacctcttcgtggatccatttcaaccaac
ttgaggaatttgctacaggccttaaatatcgctagtgaaattcttgaacaagctgtgtta
cttgttacaaatgataaccttgatttgggttgtgcagtgattgagcaacatgcgacagag
aaggctttgagtacaattgatggggaaataggtcaacaaattgctttgaggaggaagcat
agagagggtgttggtccaacatattttgatgcaagtacttacacacaaggtactatgggt
atagtaccagagtccttgcgccccaaacctggtcgcttgtcccattctcaacagagagtt
tatgaggattttgttaggtttgcatggcaaaatcaatcaaaccagagctcaaatgctatg
cctgctgccccacctgcttcatctacagtttctgttagttcaggcctgtctcgtgcttat
ggttccagcacagggcagctcaaccaaggtgtctattcatccgggcaaggggtgcaagga
tttggcgcagttgcacagcccatggatctcatgcccgaagagatggaccctggttcacaa
caactgctaagtgcttcctcaactcatattggagcacctgatggtattgttcagcacggt
tctgaaatcaattctgttgttgcttcatttccttcaactgccgcagccccagaattgcat
ttggtggaaccctctactgctgtaaaggaattgggacctaatgcacaatcatcaactcca
acgtctgccacggagcgcatgggagttggcataacggaatctttgttgaccacgggagat
gcaatagagaagtaccagctggttgcccaaaagctggaaactttggtcaccaaagacgcc
agggaagcagaaattcagggagttattgctgaggttcctgaaattatactcagatgtata
agtcggcatgaggctgcattggctgtggctcaaaaggtttttaagagtttatatgagaat
gcttcaaacagtgtacatgttggtgcacatcttgcaattctggtggctattcgagatgtt
tgcaagcttgttgtcaaggagctcactagttgggtgatatactcagatgaggagcgcaag
ttcaacaaggatataactgttggtctcattcgtagtgaattactaaaccttgcagagtac
aatgtacacatggcaaagcttattgatgcaggaaggaacaaaactgcgacagaatttgct
atttctcttctccaaacgttggtggttcaggaacctggtgtcagtgtgtcagaactccac
aatcttgttgatgctgtggcaaagcttgcaatgaggcctggatctcctgaatctttacag
cagttagttgagattgccaggaatcctgccgctaattcagctgcatcgtctggtttaact
gttggcaaggaggataaggctaggcaggcccgggaaaaaaaggttcctggtcgcaccatt
gtgatcagggaggactatgctaatgcggaatctatggcagcagatcctgccggtttctat
gaacaggtttctttgctgtttggtgaatggtgtcgaatttgtgaacttcctggtgcaaat
gatgctgcttatacgcattatatttcacaattacaacaaagtgggttgcttaaaggggat
gatatgtcagatcgctttttccgtatcctaacggaactttctgtagcatattgcgtatct
actgaggtttctcctgcctcattatcactacagcctcatcactcgcagcaaatatcattt
tttgctattgatatgtatgcgaagctcatctttctaatgctgaagtatcatgcggtggac
caagggtcaaataaattgtttcttttgccgaagatcctatcagttactgtgagggtcatc
cagaaagatgcagaggaaaagaaggcatctttcaatccaagaccatacttcagattattt
attaactggctttatgaccttagttctccagatacagtccttgatggtgccaactttcag
gtgttgacagcatttgctaatgcttttcatgccttgcaaccccttaaagttcctggtttc
agctttgcatggcttgagctggtgagtcacaggacttacatgcctaaattgctcacgctt
aaccctcagaagggttggcctcttgttcaacggttactggtagacttgttcaagtttttg
gagccatatttaaggaatgttgaactgggcgagccggttcggtttctgtacaaaggaact
ttgagggtactgcttgtgctgcttcatgattttccggagttcctctgtgattatcatttc
agcttctgtgatgtcatacctcccagctgcatccagatgcggaatgttatcctcagtgcg
tttccccgcaatatgaggctgcctgatccgtccacacccaacttgaagattgatctacta
gcagagatcagccaatcaccacacattctgtccgaggttgatgctgccctcaaggccaag
caaatgaagaatgacattgatgagtatctcaagacaaggcaacaagggtcttccttcttg
gcagagctgaagcagagattgctgcttcctcagagtgaggcagcccaggctgggacccga
tacaatgtgcccttgatcaactcccttgttctttatgtggggatgcaggctattcagcaa
ctacaaacaaggactccacctcctcatgcacaaccaatggcacagggtgcctccatggat
attttcttggtgggtgctgccatggatatattccagactttgattggggagcttgatacg
gaaggacgctacctcttcctgaatgcagttgctaaccagttacgctatccaaataaccat
acacactacttctcttttgtccttctctacttgtttgccgaagcaaaccaggaaatcatc
caggagcaaataacgagggtactgttggagcgcttgattgtgaataggcctcatccatgg
ggcctgttgataacattcattgagcttattaagaatcctagatataatttttggaatcga
tcattcacaaggtgtgcaccggagatagagaaactgtttgaatcagtctcaagatcttgt
gggggccctaaacctatggatgagggtatggtttctggtgggatctctgacaactcacac
tga
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integrated database retrieval system
