Micromonas commoda: MICPUN_95648
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Entry
MICPUN_95648 CDS
T02695
Name
(RefSeq) predicted protein
KO
K14004
protein transport protein SEC13
Organism
mis
Micromonas commoda
Pathway
mis03013
Nucleocytoplasmic transport
mis04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mis00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
MICPUN_95648
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
MICPUN_95648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mis03019
]
MICPUN_95648
04131 Membrane trafficking [BR:
mis04131
]
MICPUN_95648
Messenger RNA biogenesis [BR:
mis03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
MICPUN_95648
Membrane trafficking [BR:
mis04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
MICPUN_95648
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
MICPUN_95648
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
MICPUN_95648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR41
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
LbR_Ice_bind
Motif
Other DBs
NCBI-GeneID:
8247799
NCBI-ProteinID:
XP_002509166
JGI:
MicpuN3_95648
UniProt:
C1FIH2
LinkDB
All DBs
Position
12:complement(join(5863..6702,6800..6880))
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AA seq
306 aa
AA seq
DB search
MSVSTQAAFESGHTDQIHDCQYDYYGRRVATCSSDRTIKVFDVAGEQQTLLANLTGHDGP
VWMCAWAHPKFGTLLASCSFDHKVIIWKESEQGVFSAIYTSPATLHDASVNAISWAPHEF
GLSLACASSDGCVSVITHRADGTWDAQKIQGAHSIGCTSVSWAPAPPPGSLVAAGGASAA
PVKRLVTGGCDNLAKIWRFDPSAGWKEEHQLRAHGDWVRDVCWSVNMGLPMNTIASCGQD
NKVFIWTQNEPGGEWNKTLLNDFGAPVWRLSWSVMGNVLAVSDANNMVTVWKESVDGRWN
QISATE
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgtcgacccaggcggcgttcgaatccggtcataccgaccagatccatgactgt
cagtacgactactacggcaggagggtcgcgacttgctcgtccgaccgcaccatcaaggtg
ttcgatgtcgccggcgagcagcagacgttgctcgcgaacctgaccgggcacgacgggccg
gtctggatgtgcgcttgggcccaccccaagttcggcacgctcctggcgtcttgttcgttc
gatcacaaggttataatttggaaggagtctgagcagggcgtgttctcggccatctacacc
tcccccgcgaccctccacgacgcgtccgtcaacgccatctcgtgggctccgcacgagttc
ggcctgtccctcgcgtgcgcgtcttccgacggttgcgtctccgtcatcacccaccgcgcc
gacgggacctgggacgcgcaaaagattcagggcgcgcactcgatcggctgcacctcggtg
tcgtgggcacccgcgcctcctcccggctccttggtcgccgccggaggcgcctccgccgcg
ccggtgaagcgcctggtcaccggtgggtgcgataacctcgcaaagatctggaggttcgac
ccgagcgcgggctggaaggaggagcatcagctccgggctcacggcgactgggtcagggac
gtgtgctggagcgtgaacatgggtctgccgatgaacaccatcgccagctgcgggcaggat
aacaaggttttcatctggacgcagaacgagcccggcggcgagtggaacaagacgttgctg
aacgacttcggcgcgccggtgtggaggctaagctggagcgtgatgggaaacgtcctcgcc
gtgtcggatgcgaacaacatggtgacggtgtggaaggagtccgtggacggccgatggaac
caaatttccgccacggagtaa
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