Methylomagnum ishizawai: MishRS11D_36740
Help
Entry
MishRS11D_36740 CDS
T07434
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
misz
Methylomagnum ishizawai
Pathway
misz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
misz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MishRS11D_36740 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
misz03021
]
MishRS11D_36740 (rpoB)
03400 DNA repair and recombination proteins [BR:
misz03400
]
MishRS11D_36740 (rpoB)
Enzymes [BR:
misz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MishRS11D_36740 (rpoB)
Transcription machinery [BR:
misz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MishRS11D_36740 (rpoB)
DNA repair and recombination proteins [BR:
misz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MishRS11D_36740 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
ATG14
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
BBL76576
LinkDB
All DBs
Position
complement(4114247..4118323)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRNSFGKRRDVLEVPYLLTTQVDSYKRFLQIDAMPSKRIDEGLHAALKSV
FPIESHSGHAVLEYVNYWLGEPIFDVKECQQRGANYAAPLRVLVRLVIYDKEAPANAKVI
KDIKEQEIYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA
RIIPYRGSWLDFEFDHKDCVYVRIDRRRKLPATVLLRALGYGNEEIVKLFFETNRFSFSQ
DQIFLELIPDRLRGDIASFDIVIDGKVLVEKAHRITARHIRQMEKAGTKQLEVPREYLHG
KILAQNIVAPATGEVVARVNDELTDDMLSRIMASGVASIDTLFVNDLDRGPYISNAMRID
ATESQLDALVEIYRMMRPGEPPAKEAAQVLFDNLFFSADRYDLSAVGRMKFNRRLGRPEI
VGPGVLTKDDIIDVLRELINIRNGIGTVDDIDHLGNRRVRSVGEMVENQFRLGLVRVERA
VKERLSLADAESLMPQEIINAKPVAASIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRKV
VDGVVTNEIEYLSAIEEGKYWIAQASARMGEDGRLVDDLVSCRHQDEFTLSTADKINYMD
VSSKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRTEKPLVGTGMERIVARDSGV
TVVAKRGGVIEFLDASRIVVRVNDDETEAGVPGVDIYNLTKYTRSNQNTCINQRPLVKPG
DKVARGDILADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVQDDRFTTIHIE
EKSCVARDTKLGPEEITADIPNVGEAALAKLDESGIVYIGAEVKAGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVQVFTRDGVKKDERAKQIEQAEIE
KVKKDLNDQLRIIEKDFYQRVEQMLLGKIAEKGPNRLRSGETISAEYLEGMKPAQWLEIR
VKEEEINVQLETIAEQIAQQREEMNKRLEEKKRKIAMGDDLPPGVLKMVKVYLAVKRRIQ
PGDKMAGRHGNKGVISQIVPVEDMPYSADGTPVDIVLNPLGVPSRMNVGQVLETHLGWAA
RGLGLKIGRMLDAKRHVDEIRKFLHDVYNSSGNTEDLDSLTDAEIVELSNNLRRGVPMAT
PVFDGATEENIKSMLALADLPESGQTKLFDGRTGEQFERDVTVGCMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDTSGRTKI
YKNIVDGDHKMEAAMPESFNVLIKEIRSLGINIELEQE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcttttaccgaaaaaaagcgcatccgtaacagttttggcaagcgtcgcgat
gtacttgaagtcccctatcttttaacaactcaagtagattcttacaagcggtttttgcaa
atcgacgcgatgccgagcaagcggatcgatgaaggcttgcacgctgcgctgaaatccgta
ttccccatcgaaagccactcgggccacgcggtactcgaatatgtgaattattggctgggg
gagccgattttcgatgtcaaggaatgccagcaacggggagccaactacgcggccccgctg
cgagtgttggtgcgcttggtgatttacgataaggaagcgcccgccaacgccaaggtcatc
aaggacatcaaggagcaggaaatctacatgggcgaaatcccgctcatgaccgataccggc
accttcgtgattaatggcaccgagcgggtgattgtttcccagctccatcgttcccctggg
gtatttttcgaccacgaccgcggcaaaacccattcttccgggaaactgctgttcaacgcc
cggattattccctatcgcggttcttggttggatttcgaattcgaccacaaggattgcgtc
tatgtccgcatcgaccgccgccgtaaattgccggccacggtattgttgcgtgccttggga
tatggcaacgaagaaatcgtcaaactgttcttcgaaaccaaccgctttagtttcagccag
gaccagatattcctggaattgattcccgaccgtttgcgcggcgatattgccagtttcgat
atcgtgatcgacggcaaggtcttggtggaaaaggcgcaccgtatcaccgcgcgccatatc
cgccagatggaaaaggcgggcaccaagcaactcgaagtgccccgcgaatatctgcacggc
aagatactggcccagaatatcgtcgcgcccgccaccggtgaagtggtcgccagggtcaac
gacgaactgaccgacgacatgctgagccggatcatggcttccggcgtggcgagcatcgat
accttgttcgtcaacgacttggatcgcggtccctatatttccaacgccatgcggatcgac
gccaccgagtcgcaactcgatgccttggtcgaaatctaccgcatgatgcgtccgggcgaa
ccgccagccaaggaagccgcgcaggtgctgttcgacaatctgttcttctcggcggaccgc
tacgacttgtcggcggtgggtcgcatgaagttcaatcgccgcctgggccgtcccgaaatc
gtggggcccggcgtcctgaccaaggacgacatcatcgatgtgctgcgcgaactcatcaat
atccgcaacggcatcggcaccgtcgatgacatcgatcatcttggcaaccgccgtgtgcgt
tcggtgggcgaaatggtggagaaccagttccgcttagggttggttcgcgtcgaacgcgcc
gtgaaggagcgcttgtcgctggccgacgccgaaagcctgatgccgcaggaaatcatcaat
gccaagccggtggccgcgtcgatcaaggaattcttcgggtccagccagttgtcgcagttc
atggaccagaacaacccgctgtcggaagtgacccacaagcgccgggtttcggcgctgggt
ccgggcggtctggcccgcgagcgtgccggcttcgaggtacgcgacgtacacaccacccac
tatggccgcgtctgccccatcgaaacgcctgaaggtccgaacatcggcctcatcaactcg
ctggccgtgtatgcgcggaccaacgagtatggcttcctggaaacgccttaccgcaaggtg
gtcgatggcgtcgtgaccaacgagatcgaatacctgtcggccatcgaggaaggcaagtac
tggatcgcccaagccagcgccaggatgggcgaggatggccgcttggtggatgacttggtg
tcctgccgccatcaggacgaattcaccttgtccaccgccgacaaaatcaactacatggac
gtgtcatccaagcagatcgtgtcggtggcggcgtccttgattccgttcttggaacacgac
gatgccaaccgcgccttgatgggttccaacatgcagcgccaagcggtaccgaccctgcgt
accgaaaagcccttggtcgggaccggcatggaacgcatcgtggcccgcgattccggcgta
accgtggtcgccaagcgcggcggtgtgatcgaattcctggatgccagccgcatcgtggtc
cgcgtcaacgacgacgagaccgaagcgggcgtgccgggcgtcgatatctacaacctgacc
aagtacacccgttccaaccagaacacctgcatcaaccagcgtccgctggtaaaaccgggc
gacaaggtggcgcggggcgacatcctggccgacggtccttcgaccgacatgggcgaattg
gcgctgggccagaacctcctggtcgcgttcatgccctggaacggctacaacttcgaggac
tcgatcttgatttcggagcgcgtggtgcaggatgaccgcttcaccaccatccacatcgag
gaaaagtcctgcgtggcccgcgacaccaagctgggaccggaagaaatcacggcggatatc
cccaatgtcggcgaggccgcgctggccaagctggatgaatccggcatcgtctacatcggt
gccgaggtgaaggcgggcgatatcctggtcggcaaggtcacgcccaagggcgaaacccag
ttgaccccggaagaaaaactgctccgcgccatcttcggcgagaaagcttctgacgtgaag
gatacgtccctgcgcgtgccttccggcatggatggcaccgtgatcgacgtccaggtcttt
acccgcgacggcgtcaagaaggacgaacgcgccaagcagatcgagcaggccgagatcgag
aaggtcaagaaagacctgaacgaccagctgcgcatcatcgagaaggacttctaccagcgc
gtcgagcagatgctgctgggcaagatcgccgagaaaggcccgaaccgcctgcgctccggc
gaaaccatcagcgccgaatatctcgaaggcatgaaaccggcgcaatggctggaaatccgc
gtcaaggaagaggagatcaacgtccaactcgaaaccatcgccgagcagatcgcccagcag
cgcgaggagatgaacaagcgcctggaagaaaagaagcgcaagatcgccatgggcgacgac
ttgccgcccggcgtgttgaagatggtgaaggtctatctggcggtcaagcggcgcatccag
ccgggcgacaagatggccggacgccacggcaacaagggtgtgatttcgcagatcgtgccg
gtcgaggatatgccgtattccgccgatggcaccccggtcgatatcgtgctgaacccgctg
ggcgtgccttcgcgtatgaacgtggggcaggtgctggaaacccatttgggttgggcggcg
cgtggcttggggctcaagatcggcaggatgctggacgccaagcgccatgtcgatgaaatc
cgcaagttcctgcacgatgtctacaacagcagcggcaacaccgaggacttggattccctg
accgacgccgaaatcgtggaactttccaacaacctgcggcgcggcgtgccgatggcgacc
ccggttttcgacggtgcgaccgaggaaaacatcaaaagcatgttggccctggcggacctt
ccggaaagcggccagaccaagctgttcgatggccgtaccggcgagcaattcgagcgcgat
gtcaccgtgggctgtatgtacatgctcaagctgaaccatctggtcgacgacaagatgcac
gcccgctccaccggcccctacagcctcgtgacccagcaacctttgggcggcaaggcgcag
ttcggtggccagcgcttcggcgagatggaagtctgggctttggaagcctatggtgccgcc
tataccttgcaggaaatgttgaccgtgaaatcggacgatacttccgggcgtaccaaaatc
tacaagaacatcgtggatggcgaccataagatggaagcggccatgcccgagtccttcaac
gtgctgatcaaggaaatccggtcgttgggcatcaacattgaattggaacaggaatga
DBGET
integrated database retrieval system
