Microvirga sp. 17 mud 1-3: C4E04_07955
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Entry
C4E04_07955 CDS
T05470
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
miv
Microvirga sp. 17 mud 1-3
Pathway
miv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
miv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C4E04_07955 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
miv03021
]
C4E04_07955 (rpoB)
03400 DNA repair and recombination proteins [BR:
miv03400
]
C4E04_07955 (rpoB)
Enzymes [BR:
miv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C4E04_07955 (rpoB)
Transcription machinery [BR:
miv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C4E04_07955 (rpoB)
DNA repair and recombination proteins [BR:
miv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C4E04_07955 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AWM86663
LinkDB
All DBs
Position
1695703..1699833
Genome browser
AA seq
1376 aa
AA seq
DB search
MANTLIGRKRIRKFFGKIREVAEMPNLIEVQKASYDQFLMVEEPKGGRPEEGLQSVFKSV
FPISDFSNTALLEFVKYTFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVDPDTAARSV
KDIKEQDVYMGDMPLMTDNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDIEFDAKDIVYARIDRKRKLPVTSLLYSLGLDSEEILNTFYNRLIYKRAK
EGWTVPFDAERMKGFKASVDLIDAKTGEVVLEAGKKLTARAARQLAEKGLEALRATDEDL
YGQYIAEDLVNPSTGEIYAEAGEEITEKLLKGLDEAGFNEIPVLDIDHVTVGPYIRNTLA
VDKNSSREDALFDIYRVMRPGEPPILETAEAMFNSLFFDPERYDLSAVGRVKMNMRLDLD
AEDTVRTLRREDILAVTKALVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRLGLLRME
RAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPFR
RVRDGTVTDEVIYLSAMEEAKYNVAQANSLIDDANRLTEELVICRRAGDNIVVAPDRVDL
MEVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVQADAPFVGTGMEAVVARDS
GAAIAARRAGVVDQVDATRIVIRATEETDPTRPGVDIYRLQKFQRSNQSTCITQKPLVRA
GDLVRKGDIIADGPSTELGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIHI
EEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVHAGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIEREEI
ERLAKDRDDEQAILDRNTYARLAEILIGQGGVAGPKGYKKDTKITREILNEYPRSQWWQF
AVDNDARMTEIEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWA
AAGLGKQVAQAVDAYMKSGEAKSLREQLVSIYGNMPEIDNASDEELAELGRNLRRGVPFA
TPVFDGAKEADIEAMLEKAGLNPSGQVTLYDGKTGEPFDRRVTVGYIYMLKLHHLVDDKI
HARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTK
VYEAIVRGDDTFESGIPESFNVLVKEMRSLGLNVELTNSKKAANEPEQLPPSEAAE
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atggccaacacactgatcggccggaagcgcattcgcaagttcttcggaaaaatcagagaa
gtggcggagatgccgaacctgatcgaggttcagaaggcatcttacgaccagttcctgatg
gtcgaggaaccaaagggtggccggccggaagaaggactgcaatccgtcttcaagtcggtt
ttcccgatctcggacttctcgaacacggccctgctcgagttcgtcaagtacacctttgaa
cccccgaaatacgacgtggacgagtgccgccagcgcggcatgacctttgcggcgcccctc
aaggtgacgctgcgcctcatcgtgttcgatgtggacccggatacggccgcccgctccgtg
aaggacatcaaggagcaggacgtctacatgggcgacatgcccctgatgacggataacggc
accttcatcgtcaacggtaccgagcgcgtcatcgtctcccagatgcaccgctccccgggc
gtgttcttcgaccacgacaagggcaagacccattcgtcgggcaagctgctctttgccgcc
cgcattatcccgtatcgcggttcctggctcgacatcgagttcgacgccaaggacatcgtc
tatgcccgtatcgaccgtaagcgtaagcttccggtcacgtcgctgctctattccctgggc
ctggacagcgaagaaatcctcaacaccttctacaaccgcctgatctacaagcgcgccaag
gaaggctggaccgttccgttcgacgcggagcgcatgaagggcttcaaggcgagcgtggac
ctcatcgacgccaagaccggtgaggtcgtgctcgaggccggcaagaagctgacggcccgt
gccgcccgccagctcgccgagaagggcctcgaggccctgcgtgcgacggacgaggacctt
tacgggcagtacattgccgaggatctggtcaacccgagcacgggcgagatctatgccgag
gccggcgaggaaatcaccgagaagcttctgaagggcctggacgaggccggcttcaacgag
atcccggtcctcgacatcgaccatgtgacggtcggtccctacatccgcaacacgctggcg
gtcgacaagaactcctcccgcgaggacgccctgttcgacatctaccgggtcatgcgtccg
ggtgagcctccgatcctcgagaccgccgaggcgatgttcaactcgctcttcttcgatccc
gagcgctacgacctctcggccgtgggccgcgtgaagatgaacatgcgcctggacctcgac
gccgaggacacggtgcggacgctgcgccgcgaggatatcctggccgtgaccaaggccctc
gtggacctgcgcgacggcaagggcgagatcgacgacatcgatcacctcggcaaccgccgc
gtgcgctcggtcggcgagctcatggagaaccagtaccgcctcggcctgctccgcatggag
cgcgcaatcaaggagcgcatgtcgtcggttgatatcgacaccgtcatgccgcaggacctg
atcaacgcgaagcctgcggccgccgccgtgcgcgagttcttcggttcctcgcagctctcg
cagttcatggaccagacgaacccgctttcggaagtcacccacaagcgccgtctttcggcg
cttggcccgggcggcctcacccgcgagcgcgcgggcttcgaggtccgcgacgtgcatccg
acgcattacggccgcatctgccccatcgagacgccggaaggcccgaatatcggcctcatc
aactcgctcgccaccttcgcgcgggtgaacaagtacggcttcatcgagacccccttccgc
cgcgtccgcgacggcacggtgaccgacgaggtcatctacctctcggccatggaagaggcg
aagtacaacgtcgcccaggcgaactccctgatcgacgacgcgaaccgtctgaccgaggag
ctggtgatctgccgtcgggccggtgacaacatcgtggttgcgcctgaccgtgtcgacctc
atggaagtgtcgccgaagcagctcgtgtccgtggccgcagcgctgatcccgttccttgag
aacgacgacgcgaaccgcgcgctcatgggctcgaacatgcagcgccaggccgtgccgctc
gtgcaggccgatgctcccttcgtgggcaccggcatggaagcggtcgtcgcgcgggattcg
ggcgctgccatcgcggctcgccgcgccggcgtcgtcgaccaggtggacgcgacccgtatc
gttatccgcgctaccgaggagaccgatccgacccgtcctggcgtcgacatctatcgcctg
cagaagttccagcgatccaaccagtccacctgcatcacgcagaagcctctggttcgggcc
ggcgacctcgtccgcaagggtgacatcatcgccgacggtccgtcgacggagctgggcgag
ctggcgctgggccgcaacgtcctcgtcgccttcatgccctggaacggctacaacttcgag
gattccattctgctctccgagcggatcgtgaaggacgacgtcttcacctcgatccacatc
gaagagttcgaggtgatggcccgcgatacgaagctgggtcctgaggaaatcacgcgcgac
attccgaacgtgtcggaagaggcgctgaagaacctcgacgaagccggcatcgtgtatatc
ggcgccgaggtccatgcgggcgacattctcgtcggcaagatcacgccgaagggcgagagc
ccgatgacgccggaagagaagcttctgcgcgccatcttcggcgaaaaggcctccgacgtt
cgcgacacctcgcttcgcgttcctccgggcgtgaccggcacgatcgtggaagtccgcgtg
ttcaaccgccacggcgtcgacaaggacgagcgcgcccaggcgatcgagcgcgaggagatc
gagcgtctcgccaaggaccgtgacgacgagcaggcgatccttgaccgcaacacctatgcg
cgtctggccgagattctgatcgggcagggcggcgttgcggggccgaagggctacaagaag
gacaccaagatcacccgcgagatcctcaacgagtatccgcggtcgcaatggtggcagttc
gccgtcgacaacgacgcccgcatgaccgaaatcgaggccatgcagaagcagtatgacgag
tcgaagaagcgtctcgagcagcgcttcctggacaaggtcgagaagctgcagcggggcgat
gagctcccgcccggcgtcatgaagatggtcaaggtcttcgtggccgtgaagcgcaagatc
cagcccggcgacaagatggccggccgtcacggcaacaagggtgtcgtgtcgcgcatcgtc
ccgatcgaggacatgccgttccttgaggacggcacgcatgcggacatcgtgctcaacccg
ctcggcgtgccgagccgcatgaacgtcggccagatcctcgagacccatctcgggtgggcg
gctgccggcctcggcaagcaggtcgcccaggcggtcgacgcctatatgaagtcgggtgag
gccaagtctctgcgggagcagctcgtttcgatctacggcaacatgcccgagatcgataac
gcctccgacgaggagctggccgagctcggccggaacctgcgccgcggcgttcccttcgcg
accccggtcttcgacggcgcgaaggaggcggacatcgaggcgatgctcgagaaggccggc
ctgaatccgtctgggcaggtgacgctctacgacggcaagaccggcgagccgttcgaccgc
agggtgacggtgggctacatctacatgctgaagcttcaccacctcgtggacgacaagatc
cacgcccgctccatcggcccctacagcctcgttacccagcagccgctgggcggcaaggcc
cagttcggcggtcagcgcttcggcgaaatggaggtgtgggcgctcgaggcttacggcgcg
gcctacacccttcaggaaatgctcacggtcaagtcggacgacgtggccggccgcaccaag
gtctatgaggccatcgtgcgtggcgacgacaccttcgagtcgggcattccggagagcttt
aacgttctcgtgaaggaaatgcggtcgctcggtctgaacgtggagctcacgaactccaag
aaggccgccaacgagccggagcaactgcctccgtctgaagcggctgagtaa
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