Mesorhizobium jarvisii: EB229_24020
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Entry
EB229_24020 CDS
T06715
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mjr
Mesorhizobium jarvisii
Pathway
mjr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mjr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EB229_24020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mjr03019
]
EB229_24020
03009 Ribosome biogenesis [BR:
mjr03009
]
EB229_24020
Enzymes [BR:
mjr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EB229_24020
Messenger RNA biogenesis [BR:
mjr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EB229_24020
Ribosome biogenesis [BR:
mjr03009
]
Prokaryotic type
rRNA processing factors
EB229_24020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QKC65001
LinkDB
All DBs
Position
4849221..4852175
Genome browser
AA seq
984 aa
AA seq
DB search
MPNKMLIDASHPEETRVVVVRGNRIEEFDFESQDKKQLKGNIYLARVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLRAEAQEAEDEEDEDGDGDDRQSRDRGRRGR
RRGGKSRERGEHKRDTGEAGEGSGEPSEGDDSGDIVVEEISHTSEIIEHAADTSEHSEPS
GHADTSGHDEGSADQDETETREGGPTSIAAAVEGDVISEPVSQTEQATETTSSDNDRGML
EEVQSSHPDDHEVESVGAEDALEEVRNRRKPVRRQYKIQEVIKRRQILLVQVVKEERGNK
GAALTTYLSLAGRYSVLMPNTARGGGISRKITSAVDRKRLKEVVADLEVPQGMGVILRTA
GESRTKAEIKRDYEYLMRLWENVRNLTLQSTAPALVYEEGSLIKRSVRDLYNKDIDEILV
SGEEGYREAKDFMRMLMPSHAKVVQPFRDTTPIFVRNGIEAQLDRMLQPQVTLKSGGYII
INQTEALVAIDVNSGRSTKEHSIEDTALHTNLEAAEEVARQLRLRDLAGLIVIDFIDMEE
NRNNRSVEKRLKDHLKNDRARIQVGRISHFGLMEMSRQRIRASVLESTMKPCPHCGGTGH
VRSDSSVALMVVRAIEEFLLKDSRSHITVRTPAATALYVLNHKRGTLVELESRFGLTITI
EADDTVGAQHYAIFRGALAEKPEGFVEVRSLPAYVEPEEPEDEIAVVEEDDEVVVQAEQP
RQQPQQNQQPRPAGSEDGEGRDRKRRKRRRRRGGRDRDREHGAPADGSSISTQAGDFAGA
ADAAGDDDGEQDDAAPIAASASDEAVQAADDSQGKKRRRGKRGGKRNRREDGEGESEASA
GEATEASEADASESEPASIEPVAVAAVTEEPVAAAGEEVPSTEKPKKPRRAAKPKKAAAE
AVADTAVVEAAAEAPVEPPVAAAEEAVVAPVAQESSKARPSRRKPAAIDAPVVPVVSSTV
ADEPEAKTEEKPKRAGWWQRKGFF
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaaaatgctgatagacgcctcccacccggaggaaacacgcgttgtcgtcgta
cgcggtaaccgtatcgaagaattcgactttgaatcccaggacaagaagcagctcaaagga
aatatctacctcgcccgcgtaacgcgcgtcgaaccctcccttcaggcagcctttgtcgaa
tatggcggcaaccgtcacggttttctcgccttcagtgaaatacaccccgactactaccag
atcccggtcgccgaccgtcaggcactgctgcgcgccgaagcgcaggaggccgaggacgaa
gaggacgaggatggtgacggcgatgaccgccagagccgcgatcgcggtcggcgcggacgc
cggcgcggcggcaagagccgcgagcgcggtgagcacaagcgcgataccggcgaggcaggc
gaaggctccggcgagccaagcgaaggcgacgacagcggcgacatcgttgtcgaggagatt
tcacacacctccgagatcatcgaacacgcagccgatacatcggaacattccgagccctcg
gggcatgccgatacatcaggccatgatgaaggttccgccgatcaggacgaaaccgaaacc
cgcgagggtggtccgacatcgatcgccgccgcggtcgaaggcgatgtgatttccgaacct
gtctcgcagacggaacaggccactgaaaccacatccagcgacaatgatcgtggcatgttg
gaggaagtacagtcctcgcatcccgatgatcacgaggtcgaatcggtcggcgccgaggac
gctctggaagaagtgcgcaaccgtcgcaaaccggtgcgccgccagtacaagatccaggaa
gtgatcaagcgccggcagatcctgctggttcaggtcgtcaaagaagagcgcggcaacaag
ggtgccgcactcaccacctatctgtcgcttgccggccgctattcggtgctgatgccgaac
acggcgcgcggcggcggcatttcgcgcaagatcaccagcgcggtcgatcgcaagcgcctg
aaggaggtcgttgccgatctcgaagtgccgcaaggcatgggcgtcatactgcgcacggcc
ggcgagagccgtaccaaggccgagatcaagcgcgattatgaatatctgatgcggctgtgg
gaaaacgtgcgcaatctcacgctccagtccaccgcccctgccctcgtctatgaagaaggc
agcctgatcaagcgttcggtgcgcgacctctataacaaggatatcgacgagatccttgtc
tccggcgaggaaggctaccgcgaagccaaggacttcatgcgcatgctgatgccgagccac
gccaaggtggttcagccgttccgcgacacgacgccgatcttcgtgcgcaacggcatcgag
gcgcagctcgaccgcatgctgcagccgcaggtgacgctgaagagcggcggctacatcatc
atcaaccagaccgaggcgctggtcgctatcgacgtcaattcgggccgctccaccaaggag
cactcgatcgaggacaccgcgctccacaccaatctggaagcggccgaagaagttgcccgt
cagctcaggctgcgcgatctcgccggcctgatcgtcatcgacttcatcgacatggaggag
aaccgcaacaaccgctccgtcgagaagcggctgaaggatcacctcaagaacgaccgtgcg
cgcatccaggtcggccgaatctcgcatttcggcctaatggagatgtcacgccagcgcatc
cgcgccagcgtgctggaatcgaccatgaagccctgcccgcattgcggcggcaccggccat
gtcaggtccgattcgtcggtggcgctgatggtggtgcgggcgatcgaggaattcctgctc
aaggattcgcgcagccacatcaccgtgcgcacgccggcggcaaccgcgctctacgtgctc
aaccacaagcgcggcacgctggtggaactggaaagccgcttcggcctgaccatcaccatc
gaggccgacgatacggttggcgcgcagcactacgcgatcttccgcggcgcgctggccgag
aagcccgagggtttcgtcgaggtccgcagcctgccggcctatgtcgagcctgaggagccc
gaggacgagattgccgtcgtcgaggaagacgatgaggtcgtggtccaggccgagcagcca
cgccagcagccgcagcagaaccagcagccgcggcctgccggcagcgaagatggcgaaggc
cgcgaccgcaagcgtcgcaagcgccgcagacgtcgcggcggcagggatcgcgaccgcgag
catggcgctccggcggacggctcatccatctccactcaggccggcgatttcgccggcgcg
gcagacgcggcaggcgatgacgatggcgaacaggacgatgccgccccgatcgctgccagc
gcgtccgacgaggcggtgcaggccgcggatgacagccagggcaagaagcgccggcgcggc
aagcgcggcggcaagcgcaaccgtcgcgaagacggtgaaggcgagagcgaggcaagcgcc
ggcgaggcgaccgaggcttcggaagccgatgcttccgaaagcgagcctgcctcgatcgaa
ccggtggctgttgccgcggtgacggaagaaccggtggccgcggcgggcgaagaggtgcca
agcaccgagaagcccaagaagccgcgtcgcgcagccaagccgaagaaggcagccgccgaa
gcggtcgctgacaccgctgttgtcgaagcggccgcagaagcgccagtcgagcctccggtg
gcggctgctgaagaggcggtggttgcacccgttgcgcaagagtcttcgaaggcccggccg
tcacgacgcaagccggcggccatcgacgcgcccgtggtgccggtggtgtcctcgaccgtc
gccgatgagccggaagccaagaccgaagaaaagccgaagcgcgccggctggtggcagcgg
aagggctttttctaa
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