Maniola jurtina (meadow brown): 123877391
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Entry
123877391 CDS
T09254
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mju
Maniola jurtina (meadow brown)
Pathway
mju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123877391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mju03019
]
123877391
Messenger RNA biogenesis [BR:
mju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123877391
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123877391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
123877391
NCBI-ProteinID:
XP_045780077
LinkDB
All DBs
Position
23:7780216..7803888
Genome browser
AA seq
2390 aa
AA seq
DB search
MNLDPLTFSLTQINYLVASLNKKNFKQINLELTQIISLYGLEAENQVLRCLLTEAAKTSW
ESDRPGPAFSVHATLLAQYLSCLLNHPAKSTVVCRTVDTPAKSVQKALKPTNTLLSRLAR
LLKFTTAQEVAFSLVLRKSSPKPEIVSIAKQHLKKRFLDFVQCYLDAERGHQVERAGLQE
CSPEVLQTLLTSLAYENFRLAAVTKDLFLKRLRIDFPREVVPIVLAPLLYPDDTQTPLEE
MTTSDDMAAAMLDNSLAEIIREIGYSFTTSVEDCKNNMINFGAREPTAIDIARIISMMVR
FHATLQDGPLIQTPGNFWMNHEAKKDAIGHGHTETWNAEVFVQTLKELASNLNWKEVILQ
LDHPEFVVPDRQGLSLLFTILRLGLQSAGYPSNIFPVEYLCRRWTNLEGQMSLITNILKH
PDIFSFADHPFHPVSIDLLKSPPETDNKEVSTWRCLYLVELLLYASDRGYYMQVHELFKF
PLQNCPDILLLALLQISPPITVFRQELLTTLIPIFLGNHPNSGIILQHAWHAQNPNIKPI
IMHAMADWYIRGDCDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLKLD
KWLTDKIRDHGETFVSAMVKFLQRRCPPILGKVPDEQLPKAAQLPPETVGTMLACLQLCI
PNVQQELQEAIYNVTTSCQTLILTKTRPGITGIARPHTRVLETPFNPALGGQLFTPHVDA
IASLAPNVASLTLGAPANAAFAMPGTLGPLVAAPGSPSRLIGPGPHSPFAIMPMPQHATV
ANMTALARMPPMPAMDKPRLPEPIHFPEMMHNVSKEIEDEANGYFQRIYNHPPHPTLSID
EVLEMLKKFQDSPKNREREVFSCMLRNLFEEYRFFPQYPDKELHITAQLFGGIIEKGLVP
SYVSLGLALRFVLDALRNPEGSKMYYFGIAALDRFKSHLKDYHKYCEHVRAIPHFNEFPP
HLIEYIEYGLQSREPPTKPQGAVLPASLAAMVNQASVVTVSAPYRAVVCAPNPISVISKV
ANCAGGIGSRPSIANATNIDTLLTATDRDEKITAPPEAIQDKTAFIFNNLSQLNLQPKCE
ELKEIITEEYHQWLSQYLVMKRASIELNFHALYSNFLDVLKIREINKMVTKETYRNIRVL
LRSDKGIANFSDRSLLKNLGHWLGMLTLARSQPILYIDLDLKALLLEAYHKGQQELLYVV
PFIAKVLESCAKSVVFKPPNPWTMALMNVLAELHQEPDLKLNLKFEIEVLCKNLSLDISD
LKPSLYLKDPEKLRTIEFQLSQPKPNKEAVNVMPVHQAIIASQQLQMMPPPPPMLPVEEL
SAAAPTPTAGLVAGEPSLVGVLGLPEPRFNYLDVNVSSTSAFGHKIVYNPHIILFQNYPH
LKQFVKPAIERSIQEWVHPVVDRSIKYALTTCEQIIRKDFAFDPDETRMRTCAHHMMRNL
TAGMAMITCREQILSTISTNLKAAFTTAMIPTTPQQKDIIESAAAVLATENMELACAFIQ
KTAVEKALPELDKRLMNDYEMRKIARQEGRRYYDAIVLTYQTERIPERVRLRVGGPTDMQ
IVVYEEFACNIPGFMPVRDAGMFIPKPTQEQMPQMTFGPVVNQTQVYGHDEMTTLMTAAE
LFLTTAVPIPAFAVQATNMHTLFECLVMARRNRDIVSGYTLLQRAVEGLLDGHIVQAGAS
AEHVELMTRYRDIHLRVLKLLEDNRVYGHAWTTKQITYCVTECRDELRFNLEAIDCLVRN
HLINLPQYDLALAQLMDNGNNYVAVSFAMQLVQLYLVDDRNDAYATESDLYHCTETLARL
MAQSRAPPEGLATLIETIRINQDPSSYLGERSPLGPTSHIHNGILQVRSREYDDPHGLQE
KTENLLREWRNILLGPLTEIDIEQNFNIYVHRMNMNGILKSDDMITRFFRIATQMCVENV
YQLLNEDRMNPPPVPPKREKYYAMCDSFIKLVSLLIKNTADNGNPTPKLNLLNKILGIIA
GCLLQDQEEHGANFQQLPYHRLLLILFLDMNMPEPVLESMNYQVLTAFCHTLRIVRPSVA
PSFCYAWLEIVAHRAFINRVLAVTPQQKSIMEVLGWGMYSTLLIDLFKFLDPFLRNTELA
PPVMMLYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLILSAFPRSMRLPDP
FTPNLKVDLLAEISLPPRAVVNYATIIPSSQLKKDVDAYIKARAPVTFLSELRSNMQVVN
EPGRRYNSQLINAVVLYVGTQAIAHIRVKGQTPNMTTIAHSAHMDIFQNFTVDFDYEGRY
LFLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRMLLERLIVNRPHPWGLLI
TFIELIKNPIYKFWTHEFVHCAPEIEKLFASVARSCIAEKSGGAERELTE
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggaccctctaacgtttagcttaacacaaattaattatctagttgccagtcta
aacaagaagaatttcaagcagatcaatctagagttgactcagattatcagtctctatggc
ttggaagcagaaaatcaagtgctgaggtgcctgcttactgaggcagctaagacatcgtgg
gagagcgatcgaccggggcccgccttcagtgtacacgcgactctcctggcgcagtacctc
tcctgcctcctaaaccatccagctaagtccaccgtcgtttgtcgtactgttgatacgccg
gcaaagtcagtacagaaggccttaaaacccaccaacacgttactcagtcgactcgcgaga
ttgctgaaatttacgaccgcccaagaggtcgccttctcattggttctaagaaaaagctct
ccaaagccagaaatagtgtctatcgctaaacaacatctcaagaaacgatttttggacttt
gtacagtgttatcttgatgcagaacgtggacatcaagtcgagcgtgcaggtctgcaggag
tgcagccctgaagtgttacaaactctgctaaccagtctcgcgtacgagaactttcggctt
gcagccgtcacaaaggatttgtttctgaaacgattacgcatagactttccgcgcgaagta
gtgcccattgtgctcgctccgcttctgtatcccgacgacacacaaacgccactcgaggaa
atgactacctctgacgacatggcggcggccatgttggacaactctctggctgaaatcatc
cgggagatcggatactcctttacgacttccgtagaggattgcaaaaataatatgatcaac
tttggagcccgggaaccgacggcaatcgatatagccaggataatctcgatgatggttagg
tttcatgccactctgcaagatgggcccctgatacagacgcctggaaacttttggatgaat
cacgaagctaagaaagatgccatcggacatgggcatacagagacgtggaacgccgaggtc
ttcgttcagacattaaaggaattagcatccaatttgaactggaaggaagtcattcttcag
ctcgatcatccagaatttgtggtaccagaccggcaaggattgagcctgctcttcactata
ctgcgattgggtctccagagcgcgggctatccgagtaatatattccctgtggaatatctg
tgtcgaagatggacaaacttagaagggcaaatgagtttaattacaaatatcctcaagcat
ccagacatattcagtttcgcggatcatccctttcatccggtctcgatcgatctattaaaa
tctcctcctgaaacagataacaaggaagtatcgacttggcgctgcctctatttggtggaa
cttctactgtacgcgtcggatcgaggttattacatgcaagtccacgagctctttaaattt
cctttgcagaactgccctgacatcttattgttggcgttgctgcaaatcagtccacctatc
acagtatttaggcaggagctgctaacaacactaattccaatatttcttggcaaccatcct
aattcgggtataatattacagcacgcttggcatgcgcaaaaccccaatattaagcctata
ataatgcatgcgatggcagattggtatattcgcggggactgtgatcaatcaaaactttcg
agaatattggatgtagcgcaggacttgaaggcattgtccttgttgttaaatgtgcagtca
ttcccattcgtgatagatttggcatgcctagcgtcgaggagagagtatctcaaactcgac
aagtggctcacagataagatccgagaccacggtgaaacctttgtgtcggcaatggtgaag
ttcttgcagcggcgttgtcctccgatactaggcaaagtgccagacgagcagctgcccaaa
gcggcgcagttaccgccggagaccgtcggaacgatgttagcatgcttacagctctgcatc
ccaaatgtccagcaagagctccaagaggccatatacaatgtgaccacaagttgccaaacc
ttgatattgaccaagactaggccaggtataacgggaatcgcgcgtccacatacgagagtg
ctggagactccctttaaccccgctttaggagggcaactgtttacaccgcacgtggatgca
atcgcgagcttagcgccaaacgtcgccagtttgactttaggcgcaccggcaaacgcagca
ttcgcaatgcccggcacgttaggcccgctcgtcgctgcccccggatccccctcgcggctg
atcgggccagggccgcacagccccttcgccatcatgccgatgccgcaacacgccaccgtc
gcaaatatgacggcgctggccagaatgcctcccatgcctgcgatggacaaaccgcgctta
ccggagcccatacatttcccagagatgatgcacaacgtatcgaaagaaatagaagacgaa
gcgaatggctatttccagagaatttacaatcatcctccgcaccccactctttcgatagac
gaagtcttagaaatgctaaagaagttccaggattctccgaaaaatagggaacgcgaagtg
ttctcttgcatgttgcgaaaccttttcgaggagtacaggtttttcccacagtacccagac
aaagaacttcacatcactgctcagttgttcggcggtataatagagaaaggtctagttccc
agctacgtgtcgttagggctggctttgagattcgttttagacgcactacgcaatccagag
ggatccaaaatgtactacttcgggatagctgctctggatagattcaagtcccatttgaaa
gactaccacaagtactgcgagcacgtgagggccataccccactttaacgagttccctccg
catctcattgaatacatcgagtatggtctccagagtcgagagccgcccacgaagcctcaa
ggagcagttctacccgcaagtcttgccgccatggtgaaccaggcctccgtggtaacagtc
tcagcaccctacagggcagtggtttgcgccccgaaccccatctcagtcatctctaaggtg
gccaactgcgccggaggcataggcagccgaccttctatcgcaaacgccacgaacattgac
acactgctcacagccacggacagagatgagaaaattaccgcaccaccggaagccattcaa
gacaaaacggcgtttatttttaataatctcagtcaattgaatctacaacccaagtgcgaa
gagttgaaggaaattatcacggaagaataccaccagtggctgtcacagtacctggtcatg
aagagggcctcgatagaactcaacttccatgcactatactccaactttctcgacgttctt
aaaatacgtgaaattaacaaaatggtaaccaaagagacgtatcgcaatatcagagttctc
ctgcgatctgacaaaggcatagctaacttttctgaccgatctttgctgaaaaacctcggt
cattggttaggcatgctcacattagctcgcagccaaccaattctttacatcgacctcgac
ctcaaagcacttctactcgaagcttatcacaaaggccaacaggagctgctctacgtggtg
ccgtttatcgctaaggttttggagtcatgcgccaagagcgtcgtgttcaagccgcccaac
ccatggaccatggctctgatgaacgtgttagcggagctgcaccaggaacccgatctgaaa
ctcaacctaaagtttgagatagaagtgctttgtaaaaacttgagcttagatatttccgat
ttaaaaccgtctctatatttaaaagatccggaaaagttaagaacgatcgagtttcaactt
tcgcaaccgaaaccgaacaaggaagcggtgaacgtaatgccggttcatcaggccataata
gcgagccagcagttgcaaatgatgccgcctccgccgcccatgctgcccgtggaggagttg
tcggccgcggcgcccacgcccacggccgggctcgtggccggcgagccgagtctcgtgggc
gtgctgggcctgcccgagccgcggttcaactacctcgacgtcaacgtgtcgtccacgtcc
gcgttcggccacaagatcgtctacaacccgcacatcatcctgttccaaaactacccgcat
ctgaagcagttcgtgaagccggccatcgagagatccatccaggagtgggtccaccccgtc
gtggacaggtcgatcaagtacgccttgaccacgtgcgagcaaatcatacgcaaggatttc
gcgttcgatcccgacgagactcgcatgcggacgtgcgcgcaccacatgatgcggaacctg
acggcaggcatggccatgatcacttgtcgcgagcagatcctgagcaccatcagcaccaac
ttgaaggctgccttcacaactgctatgatacccaccactccccaacagaaggacatcata
gagagtgctgcagctgttctcgccacagagaacatggaactggcatgcgctttcatacag
aagactgctgtcgagaaggcactgcccgagctggataagcggcttatgaacgactacgaa
atgaggaagatagctagacaggaaggccgaagatactacgacgcgatagttctcacgtac
cagactgagaggataccggagcgcgtcaggctgcgggtgggcggcccgaccgatatgcag
atagtggtgtacgaggagttcgcatgcaacatcccggggttcatgccagtgcgggatgcg
ggcatgttcatacccaaacccacccaggagcaaatgccccagatgacattcggtccagtt
gtgaaccagacacaggtgtacggtcatgatgaaatgactacgctgatgacagctgcagag
ctgttcttgacgaccgctgtgccgatcccagcgtttgcggtgcaagccacaaacatgcat
acgctgttcgaatgcctcgtcatggccagacgtaaccgagatattgtctctggctacacg
cttctgcagagggctgtggagggcctattggacggtcacatcgtccaggcgggagccagc
gctgaacatgtcgagctgatgacgcggtaccgtgacatacaccttcgggtcctcaagttg
ctagaagacaatagagtctatggccacgcctggaccaccaaacagatcacatactgtgtc
acggaatgcagggacgagctcaggtttaacttggaagccattgactgtcttgtgaggaac
catctcatcaacttgccacagtacgaccttgcgcttgctcaactcatggataacggaaac
aactatgtggcggtttctttcgccatgcaattggtgcaactgtacctggtcgacgaccgc
aatgacgcctacgccacggaatctgacctgtaccattgcactgagacgctagccaggctg
atggcgcagtccagggctccgccggaaggcctcgccacgctgatcgagacgatccgaatc
aatcaagacccgagcagttatctgggcgagaggtctcctttgggccccacttctcacatc
cacaatggcattttgcaagtacgctcccgtgaatacgacgacccgcacggtctccaagag
aagacggagaacctcctccgcgaatggagaaacattcttctgggtcccctcactgagata
gatatcgagcagaacttcaacatttacgtgcaccgaatgaacatgaacggtatcctcaaa
tccgatgacatgatcacgcgattcttccgcatcgccacgcaaatgtgtgtcgagaacgtg
taccaactcctcaacgaggacaggatgaatcctcccccggtgccgccgaagagggagaag
tattatgcgatgtgtgattcgtttatcaagctggtctcgctcttgatcaagaacaccgcg
gataacggcaacccaacgccgaaactcaacttgctgaataagatacttggtataatcgct
ggttgcttgctccaagaccaggaagagcacggtgccaatttccaacagcttccttatcat
cgcctgctgctcatactgttcctcgacatgaatatgcctgaacccgtccttgagtccatg
aactatcaggtactaacagcgttctgccatactctacgcatcgtgagacccagcgttgca
cccagtttctgctacgcgtggcttgaaatagtcgcgcacagggcctttataaacagggtg
ctcgccgtcactccacagcagaagtctatcatggaagtattgggatggggaatgtattcg
acgttgctcatcgatcttttcaagttcctcgacccgtttctgcgaaacacggagttggcc
ccgccggtcatgatgctgtacaaggggaccctgaaagtgttactggttctgctccacgac
ttcccggagttcctgtgcgattaccactacgggttctgcgatgagattccgccgaactgc
atacagatgagaaatcttatcctctcggccttcccgaggagcatgagactgcccgacccg
ttcacgccgaatctaaaagtggatctgctagccgagatcagcctgccgccgcgcgcagtc
gtcaactacgcgacaataatcccctcgtcgcaactcaagaaggacgtggacgcgtacatc
aaggcccgggcgcccgtcaccttcctgtcagagctgcggagcaacatgcaggtagtaaac
gagccgggacgccggtataatagccagttgataaatgcagtggttctgtacgtgggcacg
caagctatcgctcacataagggtgaaaggacaaacgccgaatatgaccacgatagcccac
tcggcgcatatggatatattccaaaactttacagttgactttgactacgaaggacggtat
ctattcttgaacgcgatcgcgaatcagttgcgctacccgaacagccacacgcactatttt
agctgctgtcttctgtatttgttcgcggaggcaaattccgaagctgtacaagagcaaata
acgaggatgctcctcgagaggctgatcgtgaaccggccgcatccgtggggacttctcatc
acttttatcgaactcatcaagaaccccatttataaattttggacgcacgagttcgtccat
tgtgcaccagaaatcgagaagttgtttgcgtctgtcgcacgatcttgcatcgcggagaaa
tcgggaggggccgaacgcgaactgaccgagtag
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integrated database retrieval system
