Maniola jurtina (meadow brown): 123880337
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Entry
123880337 CDS
T09254
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mju
Maniola jurtina (meadow brown)
Pathway
mju03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mju00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123880337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mju03019
]
123880337
Messenger RNA biogenesis [BR:
mju03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123880337
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123880337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
123880337
NCBI-ProteinID:
XP_045784378
LinkDB
All DBs
Position
Z:complement(2733670..2769872)
Genome browser
AA seq
2395 aa
AA seq
DB search
MNLDPLTFSLTQINYLVASLNKKNFKQISLELTQIISLYGLEAENQVLRCLLTEAAKTSW
ESDRPGPAFSVHATLLAQYLSCLLNHPAKSTVVCRTVDTPAKSVQKALKPTNTLLSRLAR
LLKFTTAQDVAFSLVLRKSSPKPEIVSIAKQHLKKRFLDFVQCYLDAERGHQVERAGLQE
CSPEVLQTLLTSLAYENFRLAAVTKDLFLKRLRIDFPREVVPIVLAPLLYPDDTQTPLEE
MTTSDDMAAAMLDNSLAEIIREIGYSFTTSVEDCKNNMINFGAREPTAIDIARIISMMVR
FHATLQDGPLIQTPGNFWMNHEAKKDAIGHGHTETWNAEVFVQTLKELASNLNWKEVILQ
LDHPEFVVPDRQGLSLLFTILRLGLQSAGYPSNIFPVEYLCRRWTNLEGQMSLITNILKH
PDIFSFADHPFHPVSIDLLKSPPETDNKEVSTWRCLYLVELLLYASDRGYYMQVHELFKF
PLQNCPDILLLALLQISPPITVFRQELLTTLIPIFLGNHPNSGIILQHAWHAQNPNIKPI
IMHAMADWYIRGDCDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLKLD
KWLTDKIRDHGETFVSAMVKFLQRRCPPILGKVPDEQLPKAAQLPPETVGTMLACLQLCI
PNVQQELQEAIYNVITSCQTLILTKTRPGITGIARPHTRVLETPFNPALGGQLFTPHVDA
IASLAPNVASLTLGAPANAAFAMPGTLGPLVAAPGSPSRLIGPGPHSPFAIMPMPQHATV
ANMTALARMPPMPAMDKPRLPEPIHFPEMMHNVSKEIEDEANGYFQRIYNHPPHPTLSID
EVLEMLKKFQDSPKNREREVFSCMLRNLFEEYRFFPQYPDKELHITAQLFGGIIEKGLVP
SYVSLGLALRFVLDALRKPEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFNEFPP
HLIEYIEYGLQSQEPPTKPQGAVLPASLAAMLNQASVVTVSAPYRAVVCAPNPISVISKV
ANCAGGIGSRPSIANATNIDTLLTATDRDEKITAPPEAIQDKTAFIFNNLSQLNLQPKCE
ELKEIITEEYHQWLSQYLVMKRASIELNFHALYSNFLDVLKIREINKMVTKETYRNIRVL
LRSDKGIANFSDRSLLKNLGHWLGMLTLARSQPILYIDLDLKALLLEAYHKGQQELLYVV
PFIAKVLESCAKSVVFKPPNPWTMALMNVLAELHQEPDLKLNLKFEIEVLCKNLSLDISD
LKPSLYLKDPEKLRTIEFQLSQPKPNKEAVNVMPVHQAIIASQQLQMMPPPPPMLPVEEL
SAAAPTPTAGLVAGDPSLVGVLGLPEPRFNYLDVNVSSTSAFGHKIVFNPHIILFQNYPH
LKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQIIRKDFAFDPDETRMRTCAHHMMRNL
TAGMAMITCREQILSTISTNLKAAFITAMIPTTPQQLNTLQKDIIESAAAVLATENMELA
CAFIQKTAVEKALPELDKRLMNDYEMRKIARQEGRRYYDAIVLTYQTERIPERVRLRVGG
PTDMQIVVYEEFACNIPGFMPVRDAGMFIPKPTQEQMPQMTFGPVVNQTQVYGHDEMTTL
MTAAELFLTTAVPIPAFAVQATNMHTLFECLVMARRNRDIVSGYTLLQRAVEGLLDGHIV
QAGASAEHVELMTRYRDIHLRVLKLLEDNRVYGHAWTTKQITYCVTECRDELRFNLEAID
CLVRNHLINLPQYDLALAQLMDNGNNYVAVSFAMQLVQLYLVDDRNDAYATESDLYHCTE
TLVRLMAQSRAPPEGLATLIETIRINQDPSSYLGERSPLGPTSHIHNGILQVRSREYDDP
HGLQEKTENLLREWRNILLGPLTEIDIGQNFNIYVHRMNMNGILKSDDMITRFFRIATQM
CVENVYQLLNEDRMNPPPVPPKRDKYYAMCDSFIKLVSLLIKNTADNGNPTPKLNLLNKI
LGIIAGCLLQDQEEHGANFQQLPYHRLLLILFLDMNMAEPVLESMNYQVLTAFCHTLRIV
RPSVAPGFCYAWLEIVAHRAFINRVLAVTPQQKSIMEVLGWGMYSTLLIDLFKFLDPFLR
NTELATPVMMLYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQMRNLILSAFPRNM
RLPDPFTPNLKVDLLAEISLPPRAVINYATIIPSSQFKKDLDAYIKARAPVTFLSELRSN
MQVVNEPGRRYNSQLINAVVLYVGTQAIAHIRAKGQTPNMTTIAHSAHMDIFQNFTVDFD
HEGRYLFLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRMLLERLIVNRPHP
WGLLITFIELIKNPIYKFWTHEFVHCAPEIEKLFASVARSCIAEKSGGAERELTE
NT seq
7188 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggaccctctaacgtttagcttaacacaaattaattatctagttgccagtcta
aacaagaagaatttcaagcagatcagtctagagttgactcagattatcagtctctatggc
ttggaagcagaaaatcaagtgctgaggtgccttcttactgaggcagctaagacatcgtgg
gagagcgatcgaccggggcccgccttcagtgtacacgcgactctcctggcgcagtacctc
tcctgcctcctaaaccatccagctaagtccaccgtcgtttgtcgtactgttgatactccg
gcaaagtcagtacagaaggccttaaaacccaccaacacattactcagtcgactcgcgaga
ttgctgaaatttacgaccgcccaagatgtcgccttctcattggttctaagaaaaagctct
ccaaagccagaaatagtgtctatcgctaaacaacatctcaagaaacgatttttggacttt
gtacagtgttatcttgatgcagaacgtggacatcaagttgagcgtgcaggcctgcaggag
tgcagccctgaagtgttacaaactctgctaaccagtctcgcgtacgagaactttcggctt
gcagccgtcacaaaggatttgtttctgaaacgattacgcatagactttccgcgcgaagta
gtgcccattgtgctcgctccgcttctgtatcccgacgacacacaaacaccactcgaggaa
atgactacctctgacgacatggcggcggccatgttggacaactctctggctgaaatcatc
cgggagatcggatactcctttacgacttccgtagaggattgcaaaaataatatgatcaac
tttggagcccgggaaccgacggcaattgatatagccaggataatctcgatgatggttagg
tttcatgccactctgcaagatgggcccctgatacagactcctggaaacttttggatgaat
cacgaagctaagaaagatgccatcggacatggacatacagagacgtggaacgcagaggtc
ttcgttcagacattaaaggaattagcatccaatttgaactggaaggaagtcattcttcag
ctcgatcatccagaatttgtggtaccagacaggcaaggattgagcctgctcttcactata
ctgcgattgggcctccagagcgcgggctatccgagtaatatattccctgtggaatatctg
tgtcgaagatggacaaacttagaagggcaaatgagtttaattacaaatatcctcaagcat
ccagacatattcagtttcgcagatcatccctttcatccggtctcgatcgatctattaaaa
tctcctcctgaaacagataacaaggaagtatcaacttggcgctgcctctatttggtggaa
cttctactgtacgcgtcggatcgaggttattacatgcaagtccacgagctctttaaattt
cctttgcagaactgccccgacatcttattgttggcgttgctgcaaatcagtccacctatc
acagtatttaggcaggagctgctaacaacactaattccaatatttcttggcaaccatcct
aattcgggtataatattacagcacgcttggcatgcgcaaaaccccaatattaagcctata
ataatgcatgcgatggcagattggtatattcgcggggactgcgatcaatcaaaactttcg
agaatattggatgtagcgcaggacttgaaggcattgtccttgttgttaaacgtgcagtca
ttcccattcgtgatagatttggcatgcctagcgtcgaggagagagtatctcaaactcgac
aagtggctcacagataagatccgagaccacggtgaaacctttgtgtcggcaatggtgaag
ttcttgcagcggcgttgtccgccgatactaggcaaagtgccagacgagcagctacccaaa
gcggcgcagttaccgccggagaccgtcggaacgatgttagcatgcttacagctctgcatc
ccaaatgtccagcaagagctccaagaggccatatacaatgtgatcacaagttgccaaacc
ttgatattgaccaagactaggccaggtataacgggaatcgcgcgtccacataccagagtg
ctggagactccctttaaccccgctttaggagggcaactgtttacaccgcacgtggatgca
atcgcgagcttagccccaaacgtcgccagtttgactttaggcgcaccggcaaacgcagca
ttcgcaatgcccggcacgctaggcccgctcgtcgctgcccccggatccccctcgcggctg
atcgggccagggccgcacagccccttcgccatcatgccgatgccgcaacacgccaccgtc
gcaaatatgacggcgctggccagaatgcctcccatgcctgcgatggacaaaccgcgctta
ccggagcccatacatttcccagagatgatgcacaacgtatcgaaagaaatagaagacgaa
gcgaatggctatttccagagaatttacaatcatcctccgcaccccactctttcgatagac
gaagtcttagaaatgctaaagaagttccaggattctccgaaaaatagggaacgcgaagtg
ttctcttgcatgttgcgaaaccttttcgaggagtacaggtttttcccacagtacccagac
aaagaacttcacatcactgctcagttgttcggtggtataatagagaaaggtctagttccc
agctacgtgtcgttagggctggctttgagattcgttttagacgctctacgcaagccagag
ggatccaaaatgtactacttcgggatagctgctctggatagattcaagtcccgtttgaaa
gactaccacaagtactgcgagcacgtgagggccataccccactttaacgagttccctccg
catctcattgaatacatcgagtatggtctccagagtcaagagccgcccacgaagcctcaa
ggagcagttctacccgcaagtcttgccgccatgttgaaccaggcctccgtggtaacagtc
tcagcaccctacagggcagtggtttgcgccccgaaccccatctcagtcatctccaaggtg
gccaactgcgccggaggcataggcagccgaccttctatcgcaaacgccacgaacattgac
acactgctcacagccacggacagagatgagaaaattaccgcaccaccggaagccattcaa
gacaaaacggcgtttatttttaataatctcagtcaattgaatctacaacccaagtgcgaa
gagttgaaggaaattatcacggaagaataccaccagtggctgtcacagtacctggtcatg
aagagggcctcgatagaactcaacttccatgcactatactccaactttctcgacgttctt
aaaatacgtgaaattaacaaaatggtaaccaaagagacgtatcgcaatatcagagttctc
ctgcgatctgacaaaggcatagctaacttttctgaccgatctttgctgaaaaacctcggt
cattggttaggcatgctcacattagctcgcagtcaaccaattctttacatcgacctcgac
ctcaaagcacttctactcgaagcttatcacaaaggccaacaggagctgctctacgtggtg
ccgtttattgctaaggtcttggagtcatgcgccaagagcgtcgtgttcaagccgcccaac
ccatggaccatggctctgatgaatgttttagcggagctgcaccaggaacccgatctgaaa
ctcaacctaaagtttgagatagaagtgctttgtaaaaacttgagcttagatatttccgat
ttaaaaccgtctctatatttaaaagatccggaaaagttaagaacgatcgagtttcaactt
tcgcaaccgaaaccgaacaaggaagcggtgaacgtaatgccggttcatcaggccataata
gcgagccagcagttgcaaatgatgccgcctccgccgcccatgctgcccgtggaggagctg
tcggccgcagcgcccacgcccacggccgggctcgtggccggcgacccgagtctcgtgggc
gtgctgggcctgcccgagccgcggttcaactacctcgacgtcaacgtgtcgtccacgtcc
gcgttcggccacaagatcgtcttcaacccgcacatcatcctgttccaaaactacccgcat
ctgaagcagttcgtgaagccggccatcgagagatccatccaggagtggatccaccccgtc
gtggacaggtcgatcaagtacgccttgaccacgtgcgagcagatcatacgcaaggatttc
gcgttcgatcccgacgagactcgcatgcggacgtgcgcgcaccacatgatgcgcaacctg
acggcaggcatggccatgatcacttgtcgcgagcagatcctgagcaccatcagcaccaac
ttgaaggctgccttcataactgccatgatacccaccactccccaacagttaaacacgttg
cagaaggacatcatagagagtgcagcagctgttctcgccacagagaacatggaactggct
tgcgctttcatacagaagactgctgtcgagaaggcactgcccgagctggataagcggctt
atgaacgactacgaaatgaggaaaatagctagacaggaaggccgaagatactacgacgcg
atagttctcacgtaccagactgagaggataccggagcgcgtcaggctgcgggtgggcggc
ccgaccgatatgcagatagtggtgtacgaggagttcgcatgcaacatcccgggattcatg
ccagtgcgggatgcgggcatgttcatacccaaacccacccaggagcaaatgccccagatg
acattcggtccagttgtgaaccagacacaggtgtacggtcatgatgaaatgactacgctg
atgacagctgcagagctgttcttgacgaccgctgtgccgatcccagcgtttgcggtgcaa
gccacaaacatgcatacgctgttcgaatgcctcgtcatggccagacgtaaccgagatatt
gtctctggctacacgcttctgcagagggctgtggagggcctattggatggtcacatcgtc
caggcgggagccagcgctgaacatgtcgagctgatgacgcggtaccgtgacatacacctt
cgggtcctcaagttgctagaggacaatagagtctatggccacgcctggaccaccaaacag
atcacatactgtgtcacggaatgcagggacgagctcaggtttaacttggaagccattgac
tgtcttgtgaggaaccatctcatcaacttgccacagtacgaccttgcgcttgctcaactc
atggataacggaaacaactatgtggcggtttctttcgccatgcaattggtgcaactgtac
ctggtcgacgaccgcaatgacgcctacgccacggaatctgacctgtaccattgcactgag
acgctagtcaggctgatggcgcagtccagggctccgccggaaggcctcgccacgctgatc
gagacgatccgaatcaatcaagacccgagcagttatctgggcgagaggtctcctttgggc
cccacttctcacatccacaatggcattttgcaagtacgctcccgtgaatacgacgacccg
cacggtctccaagagaagacggagaacctcctccgcgaatggagaaacattcttctgggt
cccctcactgagatagatatcgggcagaacttcaacatttacgtgcaccgaatgaacatg
aacggtatcctcaaatccgatgacatgatcacgcgattcttccgcatcgccacgcaaatg
tgtgtcgagaacgtgtaccaactcctcaacgaggacaggatgaatcctcccccggtgccg
ccgaagagggacaagtattatgcgatgtgtgattcgtttatcaagctggtctcgctcttg
atcaagaacaccgcggataacggcaacccaacgccgaaactcaacttgctgaataagata
cttggtataatcgctggttgcttgctccaagaccaggaagagcacggtgccaatttccaa
cagcttccttatcatcgcctgctgctcatactgttcctcgacatgaatatggctgaaccc
gtccttgagtctatgaactatcaggtactaacagcgttctgccatactctacgcatcgtg
agacccagcgttgcacccggtttctgctacgcgtggcttgaaatagtcgcgcacagggcc
tttataaacagggtgctcgccgtcactccgcagcagaagtctatcatggaagtattggga
tggggaatgtattcgacgctgctcatcgatcttttcaagttcctcgacccgtttctgcga
aacacggagttagccactccggtcatgatgctgtacaagggaaccctgaaagtgttactg
gttctgctccacgatttcccggagttcctgtgcgattaccactacgggttctgcgatgag
attccgccgaactgcatacagatgagaaatcttatcctctcggccttcccgaggaacatg
agactgcccgacccgttcacgccgaatctaaaagtggatctgctagccgagatcagcttg
ccgccgcgcgcagtcatcaactacgcgacaataatcccctcgtcgcaattcaagaaggat
ctggacgcgtacatcaaggcccgggcgcccgtcaccttcctgtcagagctgcggagcaac
atgcaggtagtaaacgagccgggacgccgatataatagccagttgataaatgcagtggtt
ctgtacgtgggcacgcaggctatcgctcacataagggcgaaaggacaaacgccgaatatg
accacgatagcccactcggcgcatatggatatattccaaaactttacagttgactttgac
cacgaaggacggtatctattcttgaacgcgatcgcgaatcagttgcgctacccgaatagt
cacacgcactattttagctgctgtcttctgtatttgttcgcggaggcaaattccgaagcc
gtacaggagcaaataacgaggatgctcctggagaggctgatcgtgaaccggccgcatccg
tggggacttctcatcacttttatcgaactcatcaagaaccccatttataaattttggacg
cacgagttcgtccattgtgcaccagaaatcgagaagttgtttgcgtctgtcgcacgatct
tgcatcgcggagaaatcgggaggggccgaacgcgaactgaccgagtag
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integrated database retrieval system
