Methylacidiphilum kamchatkense: kam1_874
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Entry
kam1_874 CDS
T06102
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mkc
Methylacidiphilum kamchatkense
Pathway
mkc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mkc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
kam1_874 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mkc03021
]
kam1_874 (rpoB)
03400 DNA repair and recombination proteins [BR:
mkc03400
]
kam1_874 (rpoB)
Enzymes [BR:
mkc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
kam1_874 (rpoB)
Transcription machinery [BR:
mkc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
kam1_874 (rpoB)
DNA repair and recombination proteins [BR:
mkc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
kam1_874 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
SpGH101_helical
DUF4355
DUF6437
Motif
Other DBs
NCBI-ProteinID:
QDQ42114
UniProt:
A0A0C1UQP7
LinkDB
All DBs
Position
854112..857981
Genome browser
AA seq
1289 aa
AA seq
DB search
MNQKMQRINFGKIREGLSLPNLIEHQTKSYADFLQLSVAPQDRKPEGLHGVFQEVFPIES
YDGKVRLEYVNYEIGEPKFSPIDCLRDGKTYAAPLHVTFRLKDEEGVKEEKVYMGELPMM
TPQGSFIINGAERVIVNQLHRSPGICFESSFHSNGKTLYSFRIIPDRGSWLEVAFDSNDL
LYVYLDRRKKRRKFLITTLLRALAAALSGTSSPLGTGGDEEIIRLFYTVEEINLSEGIEE
EKVATKVLVNEVRDPNNPEVVLARAYEPVTRSVVRQLLDLGIKTIQVVDVQYDDTLIKCI
KKDPTKDPIEALKEIYRRLRPGDPPTESNAKLLLKRLLLDPKRYDLGRVGRYKLNQKLNI
QVDPEIRILTWEDLVAATRYLIKLKKGEGITDDIDHLGSRRVRAVGELVANQCRMGLART
ERLVKERMTLFDVNTEGMTPQKLINPKALSATIRDFFARSQLSQLMDQINPLSELTHKRR
LSALGPGGLSRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIATMASYSRFNEYGILET
PYRKVVNGKVTNEIVYFTADQEENYVIAMANTAVSDDGMILDQRVAVRFRREFMEVEREK
VEYIDVSPKQIVSIAAGLIPFLEHDDANRALMGSNMQRQAVPLIQPEAPIVGTGIEERVA
RDIQAVVVSETDGVVASVTGNEIIVTPTGSIADLKKKKIKQGSEKEVGIYKLNKFMRSNA
GTCINQKPIVKKGQAVKKGDILADGPSTQNGELALGRNLLVAFMPWNGYNFEDAIIVSER
IVKEDLFTSIYIDEFEIVARDTKLGPEEITRDIPNVGDEALKNLGPDGIIRVGAEVKPGD
ILVGKITPKSETELAPEERLLRAIFGEKAADVKDSSLRVPSGTYGIVMDVRVSSGTARVR
KEKISASEAKQKIKEIEERYDKKEEELREELTQALSNILLNEKIPLDVVNVETGEIIIPA
NRKITKVLLRKMAQAYDKIEIDPSPIRSKIFDIIGNFEAKFEQLRNDRELELDQIESGED
TEPGIIKQVKVFIANKRKLSVGDKMAGRHGNKGVVSKIVPVEDMPYLPDGTPVDIVLNPL
GVPSRMNVGQVLETHLGIAAKKLGFNVATPVFDGVKEEKIREFLVKAGMDEDGKSILYDG
RTGERFNQRVVVGVIYMMKLNHMVADKIHARAVGPYSLVTQQPLGGKAQYGGQRFGEMEV
WAMEAYGAAYVLQELLTVKSDDVQGRTRIYESIVKGENYLETTTPESFNVLVKEMQGLCL
EVTIGQRSDSFGLHMKPTSSKALNGGEAA
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagaaaatgcagagaatcaattttgggaaaattcgggaaggattgagtttgcct
aatcttattgaacatcaaacaaaatcttatgccgattttctccaactctcggtagctcca
caggataggaaacctgaggggttgcatggagtttttcaggaagtttttccgatagaaagt
tacgatgggaaagtcaggctggaatatgtcaattacgaaattggcgaacctaaatttagt
cccatcgattgtcttcgggatggaaaaacttatgcagcccctttgcatgttacatttcgg
cttaaagatgaggaaggggtaaaagaagagaaggtttacatgggtgagttaccaatgatg
actcctcagggaagtttcatcatcaatggggctgaaagggtaatagtcaaccaattacat
agatctcctgggatctgttttgaatcttcttttcacagtaatggaaagacgctctattcc
tttcgaatcattcctgacagaggcagttggcttgaagttgcctttgattccaacgatctg
ctttatgtctacttggacagaaggaaaaagagaagaaaatttcttattactaccttgtta
cgagcccttgccgctgcattgtctgggacctcatctcccttggggacaggtggggatgaa
gaaattatcagacttttttacacggttgaggaaatcaatctttcggagggtatcgaagaa
gaaaaagttgccaccaaagtactcgttaacgaagtccgagatcccaataacccagaggtg
gttttggctagggcttatgagccagtaacaagaagtgtggttaggcagctgttggatttg
ggcattaagacgattcaggtggtcgatgtgcaatatgatgatacgctgattaagtgtata
aagaaagatccaacgaaagacccaattgaggctttaaaagaaatatatagaaggctgcgg
cctggagacccgccaactgaatcgaatgcaaaactccttttgaaaaggcttctactggat
ccaaaaagatatgatttaggaagagttggcaggtataaactcaatcaaaaattgaacatt
caagtagatccagagattcgcatattgacttgggaggatcttgtagctgccacccgttat
ttaataaaacttaaaaaaggggaagggattactgatgatattgatcatttagggagcagg
cgcgtgcgtgcagttggtgagcttgtagccaatcagtgtcgaatgggactagctcgaacc
gaaagactcgtcaaggagcggatgacgctttttgatgtcaatacggaaggaatgacccct
caaaaattgattaatcctaaggcgttatcggctacaataagagatttttttgctcgcagc
cagctttctcagttaatggatcaaattaatcctctttcagagctgactcataagagaagg
ctttcggctttaggtccagggggcttatcaagagaacgagccggttttgaggtcagagat
gtgcacccttcccattatggaaggatatgtcctattgaaactccagaaggaccaaatatt
gggcttattgccacaatggcttcttatagccgctttaatgaatacggcattttggaaacg
ccttatcgtaaggttgttaatggcaaggtaaccaatgaaatcgtttattttacagctgat
caggaagaaaattacgtgatagccatggccaatacggcggtttctgatgatggaatgata
ttagatcagcgagttgctgtccgctttcgcagagagtttatggaagtggaacgagaaaaa
gtagaatacattgatgtctctcccaagcagatagtttctatagctgcggggctcattcca
tttcttgaacatgatgatgcgaatcgggcactcatgggttctaatatgcaaaggcaggct
gttcccctcatccagccagaagcaccgattgtgggtacaggaattgaggaaagagttgct
agggacattcaagctgtggtggttagtgaaacagacggtgtggtagcatcggttacggga
aatgaaatcattgtaacgccgactggatctattgccgatcttaagaaaaagaaaatcaaa
caaggttctgaaaaggaagttggtatatataagcttaacaagttcatgcgatctaatgct
gggacttgtatcaatcaaaaacccattgtgaaaaaaggacaggcagttaaaaaaggagat
attctagccgacggtccaagtacgcagaatggagaacttgctctgggaagaaatctgctt
gtggcctttatgccttggaatggatataactttgaggatgctatcattgtttcagaaagg
attgtcaaagaagacctttttacaagtatttatatcgatgaatttgagatagtggctcgg
gatacgaaattgggaccggaagaaatcactagagatattcctaacgtaggagatgaggca
ctaaaaaaccttggccctgatggaatcattcgagttggggcggaagttaagcctggggat
atccttgtaggaaaaataacgcctaaaagcgaaaccgaactggctccagaagagaggctt
ttaagagctatttttggagaaaaagctgctgatgtgaaagactcatctttgagggtccca
tcgggcacttatggcatcgtaatggatgtacgggtcagttcagggacggctcgtgttaga
aaagaaaagataagtgcttcggaagcgaaacagaaaatcaaagagatcgaagaaaggtat
gataaaaaagaagaagagcttcgagaagaactgacgcaggctctttccaatatcttactg
aacgaaaaaattccactggatgtggtgaatgtggagacgggagagattatcatccctgct
aaccggaaaatcacaaaggttcttttaaggaaaatggctcaagcctacgataagattgag
attgatccaagtccaatccgttccaagatctttgatattattggtaattttgaagccaaa
tttgaacaactaagaaacgatagagagttagaacttgatcaaatagaaagtggggaagat
acagaacctgggatcatcaagcaggtaaaagtatttattgctaacaaaagaaagctttcg
gttggagacaaaatggctggaaggcatgggaataagggagttgtttcaaaaattgttccc
gtagaagacatgccctatcttcccgatggtaccccagtagatattgttcttaatccgctg
ggagttccttctcgaatgaatgttgggcaagtgcttgaaacccatcttgggatagctgca
aagaagctaggcttcaatgtagccactcctgtgtttgatggagtgaaagaagagaaaata
cgggaatttttggtgaaggcgggtatggatgaagatgggaaaagcatcctttatgacggt
cgaactggagaacggtttaatcaaagagtggttgttggagtgatctacatgatgaaactc
aatcatatggttgctgataaaatccatgcccgtgctgttggaccttattccctagtaacg
cagcagcctttgggaggcaaagcgcagtatggtggccaacggtttggtgaaatggaagtt
tgggcaatggaagcctatggcgctgcttatgtcttgcaggagttgttaacggttaaatca
gacgacgtgcaaggtcgaaccagaatttatgagagcattgttaaaggggaaaattattta
gagacgacaacaccagaatcttttaatgtgcttgtcaaagaaatgcaagggttgtgtctt
gaagtcaccatcggccagcgatcggattcgtttggcttacatatgaaaccaacctcttcg
aaagccttaaatgggggtgaagcagcttaa
DBGET
integrated database retrieval system
