Mycobacterium sp. KMS: Mkms_4041
Help
Entry
Mkms_4041 CDS
T00442
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mkm
Mycobacterium sp. KMS
Pathway
mkm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mkm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mkms_4041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mkm03019
]
Mkms_4041
03009 Ribosome biogenesis [BR:
mkm03009
]
Mkms_4041
Enzymes [BR:
mkm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mkms_4041
Messenger RNA biogenesis [BR:
mkm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mkms_4041
Ribosome biogenesis [BR:
mkm03009
]
Prokaryotic type
rRNA helicases
Mkms_4041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ABL93233
UniProt:
A1UK75
LinkDB
All DBs
Position
complement(4261537..4263210)
Genome browser
AA seq
557 aa
AA seq
DB search
MTSPEPDAPGTETTFADLQIHPEVLRAVTDVGYETPSAIQAATIPAMLAGSDVVGLAQTG
TGKTAAFAIPILSKIDPNSRATQALVLAPTRELALQVAEAFGRYGAHLPVNVLPVYGGSS
YGPQMAGLKRGAQVVVGTPGRVIDHLEKGSLDLSHLDYMVLDEADEMLQMGFAEDVERIL
SDTPEYKQVALFSATMPPGIKKITKKYLHDPVEVTVKSKTQTAENITQRYIQVSYPRKMD
ALTRLLETEQGDGMIVFVRTKQATEEVAEKLRARGFAAAAINGDIPQAVRERTISQLKDG
SIDILVATDVAARGLDVERISHVVNFDIPHDPESYVHRIGRTGRAGRSGTALLFVTPRER
HLLNSIERVTRQKLVEIQLPSVEDVNAQRVEKFRDSIGEALNAPGIDLFRRLIEDYERDN
NVPLADIAAALAVQSRNGEEFLMTEPPPEKRRERPVRDESGPRKARDRTRSDLATYRIAV
GKRHKVMPGAIVGAIANEGGLNRSDFGHIAIKPEYSLVELPADLPKDTLKKLERTRIQGV
LINLEPDRGPKARYKGK
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgcctgagccggacgcccccggtaccgaaaccaccttcgctgatctgcagatt
cacccggaggtgttgcgggccgtcaccgacgtcggctatgagacgccgtcggcgatccag
gccgcgaccatcccggcgatgctcgccggctccgacgtcgtcgggctcgcccagaccggc
accggcaagaccgcggccttcgccatcccgatcctgtcgaagatcgaccccaacagccgc
gccacccaggccctggtcctcgcgccgacacgtgagctcgcgctgcaggtcgccgaggcg
ttcggccgctacggcgcgcatctgccggtcaacgtgctgccggtgtacggcggctcgtcc
tacggaccgcagatggccgggctgaaacggggcgcgcaggtcgtcgtcgggaccccgggc
cgggtgatcgaccacttggagaagggcagcctcgacctgtcgcacctggactacatggtg
ctcgacgaggccgacgagatgctgcagatgggtttcgccgaggacgtcgaacggattctg
tccgacacccccgagtacaagcaggtggcgctgttctccgcgaccatgccgccgggaatc
aagaagatcaccaagaagtacctgcacgatccggtcgaggtcacggtcaagtccaagacg
cagaccgccgagaacatcacgcagcgctacatccaggtgtcgtacccgcgcaagatggac
gcactgacccggctgctggagacggagcagggcgacgggatgatcgtgttcgtccgcacc
aaacaggccaccgaggaggtggccgagaagctgcgggcgcgcgggttcgcggcggcggcg
atcaacggcgacatcccgcaggcggtgcgtgaacgcaccatctcgcaactcaaggacggt
tcgatcgacatcctcgtcgcgaccgacgtcgccgcccgtggtctggacgtcgagcggatc
tcgcacgtggtgaacttcgacatcccgcacgacccggagtcctacgtgcaccgcatcggg
cgcaccgggcgcgcaggccgctcgggcaccgcgctgctgttcgtcaccccgcgcgaacgg
cacctgctgaactcgatcgagcgggtcacccggcagaagctcgtcgagatccagttgccg
tcggtcgaggacgtcaacgcccagcgcgttgagaagttccgcgactcgatcggtgaggcc
ctcaacgctccgggcatcgacctcttccgccgcctcatcgaggactacgaacgcgacaac
aacgtgccgctggccgacatcgccgcggcgctcgccgtgcagtcccgcaacggcgaggag
ttcctgatgaccgaaccgccgccggagaagcggcgggagcggcccgtccgggatgagagc
ggcccacgcaaggcgcgcgaccgcacgcggtcggacctcgcgacctaccgcatcgcggtg
ggcaagcggcacaaggtgatgcccggtgcgatcgtcggcgcgatcgccaacgagggcggc
ctgaaccgcagcgacttcggtcatatcgcgatcaagccggagtactcgctggtggagctg
cctgccgacctgccgaaggacaccctcaagaagctcgagcgcacacgcatccagggtgtg
ctgatcaatctcgagcccgatcgcgggccgaaggcgcgctacaagggcaagtga
DBGET
integrated database retrieval system
