Microvirga lotononidis: U0023_21610
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Entry
U0023_21610 CDS
T09656
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mld
Microvirga lotononidis
Pathway
mld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0023_21610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mld03019
]
U0023_21610
03009 Ribosome biogenesis [BR:
mld03009
]
U0023_21610
Enzymes [BR:
mld01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
U0023_21610
Messenger RNA biogenesis [BR:
mld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U0023_21610
Ribosome biogenesis [BR:
mld03009
]
Prokaryotic type
rRNA processing factors
U0023_21610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_19
Motif
Other DBs
NCBI-ProteinID:
WQO27212
LinkDB
All DBs
Position
4584039..4586750
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AA seq
903 aa
AA seq
DB search
MANKMLIDASHPEETRVVVVRGQKVEEFDFESANRKQLRGNIYLAKVTRVEPSLQAAFVE
YGGNRHGFLAFSEIHPDYYQIPVADRQALLEAEAEAQAEEEREEERRSNRRRRRSSPRRA
ENDETVVSTEAEAGTEAALEAVEGSAHTEAAGEEGEAPGSDTQDAVPLVMAGQAPDEGAE
EAAVEAVEGSAHVEAPEGDEAAQGDEPAAEADARAPEGDTEADEDEEDEDEDDHDVEEHE
IVEQLGGDDAIEDLPQRRRTPRKQYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLA
GRYSVLMPNTGRGGGISRKITNAADRKRLKEIAQELEVPEGMGIILRTAGASRTKPEIKR
DYEYLMRLWESVRELTLKSAAPALVYEEGSLIKRAIRDLYNKDIDDVMVAGEEGYREAKD
FMRMLMPSHSKLVQPYRDPQPLFAKFGVEAQLDAMFSNVVTLKSGGYLVINPTEALVSID
VNSGRSTREHNIEDTALRTNLEAAEEIARQLRLRDLAGLVVIDFIDMEEKRNNRAVEKKL
NECLKNDRARIQVGRISPFGLLEMSRQRIRTGVLESSSIPCPHCAGTGFVRSTPSVALQV
LRSIEETLIKNSGYNLVVRTRMEAAFYILNQKRIHLRELETRFGVAISIVADDSLHGTTT
YAIERGEPALKLEHKSAATGIQIDAIAIDEPVEEIEVETEEEATEEAQGSEERGEEGEGG
GRRRRRRRRRRGRDREGFAGEAQGEEGAEAGEAESETDEEEAEVEASGEEAAPVEAGEAD
EESRGGRRRRRGRRGGRGRGRDETTEEFALEEGFVAPDQVQAQPAPEEAAPAEAVSETSE
PRPTVESEPIVTPERPVAEAPVPPPAPVAPEPEPVAVVLTPPDPERPKRAGWWSKAKSVL
SGS
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaagatgctcatcgatgcctcacacccggaagaaacccgggtcgtggtggta
cgtggtcagaaggtcgaagaattcgacttcgagtccgctaaccggaagcagctgcgcggg
aatatctatctcgccaaggtcacccgggtcgaaccgtcgctccaggcggcctttgtggaa
tacggcggaaaccgccacgggttcctcgcattcagcgaaatccatcccgattattatcaa
attcccgtcgccgaccgtcaggcgctgctcgaagccgaagccgaagctcaggccgaggag
gagcgcgaggaggagcgccgcagcaaccgtcgccgccgccggtcttcgccgcgtcgcgcc
gagaacgacgagaccgttgtctcgacggaagcggaagccggaaccgaggctgccctcgag
gcggtcgagggttcggcccataccgaggctgccggcgaagagggcgaggctccgggctcc
gacacgcaggatgccgttcccctggtgatggccggccaggctcccgacgaaggcgccgag
gaggctgccgtcgaggcggtcgagggttcggcccacgtggaggcccctgagggtgacgag
gccgcccaaggcgatgaacctgcggcggaggccgatgcccgggcgcccgagggcgacacg
gaagccgacgaggacgaagaagacgaggacgaagacgatcacgacgtggaagagcacgag
atcgtcgagcagctcggtggagacgacgcgatcgaggacctgcctcagcgccggcgcacg
ccccgcaagcagtacaagatccaggaagtcatcaagcgccgccagatcctgctggtccag
gtcgtgaaggaagagcgcggcaacaagggcgcggcgctcaccacctacctgtcgctggcc
ggtcgctattccgtgctcatgcccaacacgggccggggcggcggtatctcccgcaagatc
accaacgcggccgaccgcaagcgcctgaaggaaatcgcccaggagctggaggtgcccgag
ggaatgggcatcatcctgcgcacggccggcgcctcgcgcaccaagcccgagatcaagcgc
gactacgagtacctgatgcgcctctgggagagcgtgcgcgaactgactctgaagtcggcg
gcacccgccctcgtctatgaggaaggctccctcatcaagcgcgcgatccgcgacctctac
aacaaggacatcgacgacgtcatggtcgccggcgaggaggggtaccgcgaggccaaggac
ttcatgcggatgctcatgccgagccattcgaagctggtccagccctaccgcgatccgcag
cctctcttcgcgaaattcggcgtcgaggcgcagctcgacgccatgttctcgaacgtggtg
accctgaaatcgggcggctacctcgtcatcaacccgacggaagccctcgtttccatcgac
gtgaactctggtcgttcgacccgcgagcacaacatcgaggacacggcgctgcgcaccaac
ctcgaagcggctgaggaaatcgcccgccagctccgcctgcgcgatctcgccggcctcgtg
gtgatcgacttcatcgacatggaggagaagcgcaacaaccgcgcggtcgagaagaagctc
aacgagtgcctgaagaacgaccgcgcccgcatccaggtgggtcgcatctcgcccttcggc
cttctcgaaatgtcgcgccagcgcatccgcaccggcgtgctggaatcctcctcgatcccc
tgcccgcattgcgccggcaccggcttcgtgcgttcgacgccgtcggtggccctgcaggtg
ctgcgctcgatcgaggaaaccctcatcaagaattcaggctacaacctcgtcgtccgcacc
cggatggaggcggccttctacatcctgaaccagaagcgcattcacctgcgcgagctggag
acccgcttcggcgtggcgatctccatcgtggccgacgacagcctccacggcacgacgacc
tacgccatcgagcgcggcgaacccgccctcaagctcgagcacaagtcggccgcgaccggc
atccagatcgatgcgatcgccatcgacgagcccgtcgaggagatcgaggtcgagactgag
gaggaggccaccgaggaggctcagggcagcgaagagcgcggcgaggaaggcgaaggcggt
ggacgccgtcgtcgccgccgtcgccgccgtcgcggtcgcgaccgcgagggctttgcaggc
gaggcccagggcgaggaaggcgcggaagccggcgaggccgagagcgaaaccgacgaggaa
gaagccgaggtcgaagcgtccggggaagaggctgctcccgtcgaagccggcgaggcggac
gaggaatcccgtggcggacgccgccgccgtcgcggacgtcgcggcggacgcggacgcggc
cgcgatgagacgaccgaggaattcgcccttgaggagggtttcgtggcccccgaccaggtt
caggcccaaccggctccggaggaagctgcccctgcggaagccgtttccgagacctcggag
ccccggccgaccgtcgagagcgagccgatcgtcaccccggagcgcccggtggccgaggcc
cccgttcctccgccggcgcccgtcgctcccgagccggaaccggtcgccgtcgtcctgacc
ccgccggacccggagcgcccgaagcgcgccggctggtggtccaaggccaagtcggtcctg
agcggatcttaa
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