KEGG   Mariniflexile litorale: QLS71_012705
Entry
QLS71_012705      CDS       T10312                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
mlil  Mariniflexile litorale
Pathway
mlil03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mlil00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    QLS71_012705 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mlil03021]
    QLS71_012705 (rpoB)
   03400 DNA repair and recombination proteins [BR:mlil03400]
    QLS71_012705 (rpoB)
Enzymes [BR:mlil01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     QLS71_012705 (rpoB)
Transcription machinery [BR:mlil03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     QLS71_012705 (rpoB)
DNA repair and recombination proteins [BR:mlil03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      QLS71_012705 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 RnfC_N AGA2
Other DBs
NCBI-ProteinID: XBL13179
UniProt: A0AAU7EAV6
LinkDB
Position
3036518..3040330
AA seq 1270 aa
MLSTQAERLNFSSIVNRTEYPDFLDIQIKSFQDFFQLETKSDERGDEGLYNTFMENFPIT
DSRNQFVLEFLDYFVDPPRYAIDECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINQVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEIKVSKTGLKKYQGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTILDKDNIEEIIEADVKAILLHKESAE
QGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEV
GRYRMNKKLGLNIEMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAK
VNGMGFIETPYRPVNEGVVNIKDTPIYLSAEEEEGKLIAQATVKVDGEGKILHEKVIARM
EGDFPVIDPTSLHYTDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLLPQAP
IVGTGLERQVASDSRVLINAEGHGVVLYVDANEIKIQYDRTEDEAKVSFDSDIKTYQLIK
FRKTNQGSSINLKPIVTKGDKVVKGQVLCEGYATQKGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVREDIFTSIHIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDENGMIRIGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIEKKLFS
RAVKDKRKRAQDKDDIIALEAIYDRKFDDLKEVLIEKLFNIVNGKTAQGIFNDLGEEVLP
KGKKFTQKMLNAVDDYAHLVSGKWTTDEHTNQLVADLIHNYKIKENDLQGSLRREKFTIS
VGDELPAGIIKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRAEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKLGRTYATPIFDGATIEQINELTDEAGIPRYGHTY
LYDGGTGARFDQPATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASATLREILTVKSDDVIGRAKTYEAIVKGEPMPDPGLPESFNVLMHELK
GLGLDIRLEE
NT seq 3813 nt   +upstreamnt  +downstreamnt
atgttatcaacacaagctgaaagattaaatttctcgtctattgtaaatagaaccgagtac
ccagatttcttggatattcagattaaatccttccaggattttttccaattagagacaaaa
tcggatgaaagaggtgatgaaggtttatataataccttcatggaaaactttcctattaca
gattcacgtaatcaatttgttttagaatttttagattactttgtagacccaccacgttac
gctattgatgagtgtattgaaagaggtcttacttatagcgttccgctaaaggcaaggtta
aagttatattgtacagatcctgaacatgaagatttcgaaaccattgttcaagatgtgtac
ttaggaacaataccgtatatgacgcctagtggtacctttgttattaatggtgcagaacgt
gttgttgtatctcaattacaccgttcaccaggggtgttctttgggcaatcattccatgct
aatggaactaaattatattcagcaagagtgattccttttaaaggatcttggattgaattt
gctaccgatattaatcaggtaatgtatgcgtacattgatagaaagaaaaagttacctgtt
actacgttgtttagagctatcggttttgaacgtgataaagatatcttagagatttttgat
ttagctgaagaaattaaagtatctaaaactggattaaaaaaatatcaaggacgtaaatta
gcagcacgtgtacttaatacatggcatgaggattttgttgatgaagatacaggtgaagta
gtatcaatcgagcgtaatgaaattattcttgatcgtgatactattttagacaaagataat
attgaagaaattattgaagcggatgttaaagcgattcttttacacaaagaaagtgctgaa
caaggtgattatgctattattcataatacgcttcaaaaagatccaacaaactctgaaaaa
gaggctgttgaacatatttatagacaattacgtaatgctgagccgccagatgaggaaact
gcacgaggaataattgataaattattctttagtgatcaacgttactctttaggtgaagtt
gggcgttatagaatgaataaaaaattaggacttaatattgaaatggataagcaagtgctt
accaaagaagatattattactattataaaatatttaatcgagcttatcaactctaaagct
gagattgatgatattgatcacttatctaaccgtcgtgtacgtacagttggtgagcaatta
tctcaacaatttggtgttggtttagcacgtatggcacgtaccattcgtgagcgtatgaac
gttcgtgataatgaggtgtttacaccaattgatttaattaatgctaagacgttatcgtct
gtaattaattcgttctttggtaccaaccagttatctcagtttatggatcaaaccaatcca
cttgctgaaattacgcataagcgtcgtttatcggcattaggaccaggtggtttatctcgt
gaaagagcaggttttgaggtacgtgatgttcactatactcattacggacgtttatgtcct
attgaaacgcctgaaggaccaaatattggtttgatttcatcactttcagtttttgctaaa
gtgaatggaatgggctttattgaaacgccttaccgtccagtaaatgaaggtgttgtcaat
attaaagatacacctatttatttaagtgctgaagaagaagaaggaaaacttatagctcaa
gcaactgttaaagttgatggagaaggtaagatattacatgagaaggtaattgcacgtatg
gaaggtgacttccctgtaatagacccaacaagtctacattatacagatgttgcacctaat
caaatctcatctatttcggcgtctttaattccgttcttagaacatgatgatgcgaataga
gccttgatgggatctaacatgatgcgtcaagcagtaccgttattattacctcaagcacca
attgtaggtactggtttagaacgtcaagtagcatcagattctcgtgtgttaataaatgca
gaaggacatggtgttgtactttacgttgatgcgaatgaaattaaaattcaatacgatcga
acagaagatgaagctaaagtaagttttgatagtgatattaaaacataccagttaatcaaa
tttagaaaaaccaatcaaggatctagtatcaatttaaaaccaatcgtaacgaaaggagat
aaagttgttaaaggacaagttttatgtgaaggttatgcgactcaaaaaggtgagttagca
ttaggtagaaacatgaaagtggccttcatgccttggaaaggttataactttgaggatgca
attgtaatttctgaaaaagtagttcgtgaagatatttttacatctattcatattgatgag
tattcattagaagttagagatacaaaattaggtaacgaagagttaactaatgatattcct
aacgtttctgaagaagctactaaagatttagatgaaaatggaatgattcgtattggtgca
gaagtgaaaccaggcgatatcttaattggaaaaattactcctaaaggagaaagtgatcca
actccagaagaaaaattattacgtgctatctttggtgataaagcaggagatgtaaaagat
gcctctttaaaagcttcaccatctttaaatggtgtcgttattgagaaaaaattattctct
agagctgtaaaagacaaacgtaagagagctcaagataaagatgatattatagcgttagaa
gctatttacgatagaaaatttgatgatttaaaagaagttttaatcgaaaaattattcaac
attgtaaatggtaaaacggctcaaggtatttttaatgatttaggggaagaagtattacca
aaaggtaaaaaattcactcaaaaaatgttaaatgctgttgatgattatgcacatttagtg
tcaggaaaatggacaacagatgagcataccaatcaattagtggccgatttaattcataac
tacaaaattaaagaaaacgatttacaaggttctttaagacgtgagaagtttactatttct
gtcggagatgagttgccagcaggtattatcaaattagctaaagtttatattgctaaaaaa
cgtaaacttaaagttggtgataaaatggcaggacgtcacggtaacaaaggtattgttgct
cgtattgtaagagcagaagatatgcctttcttagaagacggaacacctgttgatattgta
ttaaatccacttggtgtaccatctcgtatgaatattggtcaaatttatgaaacagttctt
ggttgggcaggtcaaaaattaggacgcacatatgctacacctatttttgatggtgctact
attgaacaaatcaacgagttgactgatgaagcaggaattccaagatacggacacacttac
ttgtatgatggtggtacaggagcacgtttcgatcaacctgcaactgtaggagttatctat
atgttgaaattaggacatatggttgacgataaaatgcatgcacgttctatcggaccttac
tcattaattacacaacaacctcttggtggtaaagcacaatttggtggtcaacgttttggt
gagatggaggtttgggcgcttgaggcgtatggagcttcagcaactttacgtgaaatctta
actgtaaaatcggatgatgttattggtagagctaaaacttacgaagcaatcgtaaaaggt
gagccaatgccagatccaggattaccagagtcgttcaatgtattaatgcacgaacttaaa
ggtttaggcttagatattagattagaagaataa

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