Microbacterium limosum: RYJ27_11615
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Entry
RYJ27_11615 CDS
T09965
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mliy
Microbacterium limosum
Pathway
mliy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mliy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RYJ27_11615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mliy03021
]
RYJ27_11615
03400 DNA repair and recombination proteins [BR:
mliy03400
]
RYJ27_11615
Enzymes [BR:
mliy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RYJ27_11615
Transcription machinery [BR:
mliy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RYJ27_11615
DNA repair and recombination proteins [BR:
mliy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RYJ27_11615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WOQ69332
UniProt:
A0AAU0MHP9
LinkDB
All DBs
Position
complement(2405677..2409171)
Genome browser
AA seq
1164 aa
AA seq
DB search
MAAARNASTTPTKNGRGASRLSFAKISDTLTVPDLLALQTESFDWLVGNEAWQTRLAEAQ
AAGRTDIALKSGLEEIFEEISPIEDLSETMQLSFTNPYLEPEKYSIEECKERGKTYAAPL
YVEAEFMNHQTGEIKTQTVFMGDFPLQTDKGTFIINGTERVVVSQLVRSPGVYFDKTPDK
TSDKDIVSARIIPSRGAWLEFEVDKRDQVGVRIDRKRKQSVTVFLKALGLTSEDILNEFA
GFDSIEETLSKDTILTKEDALRDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVGR
YKINQKLGLDTALSDSVLTVDDIVATIKYLVRLHRGDATFEGIRGGKTAEIRLDVDDIDN
FGNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFG
TSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGP
NIGLIGSLASFARINAFGFIETPYRRVVDGRVTDDIDYLTASEENDFIVAQANAPLKADG
HFVEERVLARRGKGGEVDLFHPEEIGYMDVSPRQMVSVATSLVPFLEHDDAQRALMGANM
QRQAVPLLRSDSPFVGTGMEGYAAVDAGDVITAQKAGVVMEVSADVVTVQLDEGGTQDYY
LRKFDRSNQGTSYNQRVVVSAGERVEVGEVIADGPATENGELALGKNLLVAFMPWEGHNF
EDAIILNQDLVKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPDLLKDLDERGIIR
IGAEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEQGTIIAVK
EFNAEDGDDELGSGVNRRVVVYIAQKRKITEGDKLAGRHGNKGVIAKILPVEDMPFLPDG
TPVDVVLNPLGIPGRMNFGQVLETHLGWIAKQGWKVEGNPEWAQLLPEEAREAAPGTKVA
TPVFDGAREEEIRGLLDSTLPTRDGDRLIDSSGKTRLFDGRSGEPFPDPVSVGYMYILKL
HHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKS
DDILGRVKVYEAIVKGENIQEPGIPESFKVLIKEMQSLCLNVEVLSADGTAVNLRDTDDD
AFRAAEELGINISSRFESSSIDEI
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcgcaacgcatccaccacccccaccaagaacggacgcggagcttcgcgt
ctctcgttcgccaagatctccgacacgctgacggtccccgacctgctggcactgcagacc
gagtcgttcgactggctcgtcggcaacgaggcgtggcagacgcgcctggccgaggcgcag
gccgccggtcgcaccgacatcgcactcaagagcggactcgaggagatcttcgaggagatc
tcgccgatcgaggacctctcggagacgatgcagctgtcgttcacgaacccctacctcgag
cccgagaagtactcgatcgaggagtgcaaggagcggggcaagacctacgccgcaccgctg
tacgtcgaggccgagttcatgaaccaccagaccggtgagatcaagacgcagacggtcttc
atgggcgacttcccgctccagaccgacaagggcacgttcatcatcaacggcaccgagcgc
gtcgtcgtctcgcagctcgtgcgctcgcccggtgtgtacttcgacaagacgcccgacaag
acgagtgacaaggacatcgtctcggcgcgcatcatcccgagccgcggcgcgtggctcgag
ttcgaggtcgacaagcgcgaccaggtcggcgtgcgcatcgaccgcaagcgcaagcagtcg
gtgaccgtcttcctcaaggcgctgggcctgaccagcgaggacatcctgaacgagttcgcc
ggcttcgactcgatcgaggagacgctgtcgaaggacacgatcctcacgaaggaagacgcg
ctccgcgacatctaccgcaagctccgtccgggcgagcaggtcgccgccgaggccgcccgc
gcgctgctggacaacttctacttcaacccgaagcgctacgacctggccaaggtcggtcgg
tacaagatcaaccagaagctcggtctcgacacggccctgtcggactcggtgctcaccgtc
gacgacatcgtcgcgacgatcaagtatctcgtccgtctgcaccgcggcgacgcgaccttc
gaggggatccgcggcggcaagaccgccgagatccgcctcgacgtcgacgacatcgacaac
ttcggcaaccgccgcatccgcgccgtcggagagctcatccagaaccaggtccgcacgggt
ctctcgcgcatggagcgcgtcgtgcgcgagcgcatgacgacgcaggacatcgaggccatc
acgccccagaccctgatcaacgtgcgccccgtcgtcgccgcgatcaaggagttcttcgga
acgagccagctgtcgcagttcatggaccagaacaacccgctcgcgggcctgacccacaag
cgccgcctctcggcgctcggtcccggcggtctgtcccgtgagcgcgccggcgtcgaggtc
cgcgacgtccacccgtcgcactacggccgcatgtgcccgatcgagacgccggaaggcccg
aacatcggtctgatcggctcgctcgcctcgttcgcccggatcaacgcgttcggcttcatc
gagacgccgtaccgtcgcgtggtcgacggccgcgtcaccgacgacatcgactacctcacc
gccagcgaggagaacgacttcatcgtcgcccaggccaacgcgcccctgaaggccgacggc
cacttcgtcgaggagcgcgtcctcgcccgccgcggcaagggcggcgaggtcgacctcttc
caccccgaggagatcgggtacatggatgtctcgccgcgccagatggtgtcggtcgcgacc
tcgctcgtgcccttcctcgagcacgacgacgcgcagcgcgcgctcatgggcgccaacatg
cagcgtcaggccgtgccgctgttgcgcagcgactcgccgttcgtgggcaccggtatggag
ggctacgcggccgtcgacgccggcgacgtcatcacggcgcagaaggccggcgtcgtgatg
gaggtctccgccgacgtcgtgaccgtgcagctcgacgagggcggaacgcaggactactac
ctgcgcaagttcgaccgctccaaccagggcacctcctacaaccagcgcgtcgtcgtgagc
gccggcgagcgggtcgaggtcggcgaggtcatcgccgacggtcccgccaccgagaacggc
gagctggccctcggcaagaacctcctcgtggcgttcatgccgtgggagggtcacaacttc
gaggacgcgatcatcctcaaccaggatctggtgaaggacgacaccctctcctcgatccac
atcgaggagtacgaggtcgacgcgcgcgacaccaagctcggcaaggaggagatcacccgt
gacctccccaacgtcagccccgacctgctgaaggacctcgacgagcgcggcatcatccgc
atcggcgccgaggtccgccccggcgacatcctggtcggcaaggtcacgcccaagggcgag
accgagctctcggccgaggagcgactgctgcgcgcgatcttcaacgagaagagccgcgag
gtccgcgacacgtcgctgaaggtgccccacggtgagcagggcacgatcatcgcggtcaag
gagttcaacgccgaggacggcgacgacgagctcggctcgggcgtcaaccgccgcgtcgtg
gtctacatcgcccagaagcgcaagatcaccgagggcgacaagctcgccggccgccacggc
aacaagggtgtcatcgcgaagatcctcccggtcgaggacatgcccttcctccccgacggc
acgccggtcgacgtcgtgctcaacccgctcggcatcccgggccggatgaacttcggccag
gtgctcgagacccacctcgggtggatcgcgaagcagggctggaaggtcgaggggaacccg
gagtgggcgcagctgctgcccgaggaggcccgtgaggcagcccccggcaccaaggtcgcc
acgcccgtcttcgacggcgcgcgcgaggaggagatccggggtctgctcgactcgaccctc
cccacccgcgacggcgaccgcctcatcgactcctccggcaagacgcgcctgttcgacggg
cgctcgggcgagccgttccccgaccccgtctcggtcggctacatgtacatcctgaagctg
caccacctcgtcgacgacaagatccacgcacgctcgacgggcccgtactcgatgatcacg
cagcagccgctgggtggtaaggcgcagttcggcggccagcgcttcggtgagatggaggtg
tgggcgctcgaggcctacggtgccgcgtacgcgctgcaggagctcctcacgatcaagtcc
gacgacatcctcggccgcgtcaaggtgtacgaggcgatcgtcaagggcgagaacatccag
gagcccggcatccccgagtccttcaaggtgctcatcaaggagatgcagtcgctctgcctg
aacgtcgaggtgctctcggccgacggcacggcggtcaacctccgagacaccgacgacgac
gccttccgcgccgccgaggagctcggcatcaacatctcctcccggttcgagtcctcgtcg
atcgacgagatctga
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