Micrococcus lylae: CJ228_006230
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Entry
CJ228_006230 CDS
T09111
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mly
Micrococcus lylae
Pathway
mly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJ228_006230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mly03021
]
CJ228_006230
03400 DNA repair and recombination proteins [BR:
mly03400
]
CJ228_006230
Enzymes [BR:
mly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJ228_006230
Transcription machinery [BR:
mly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJ228_006230
DNA repair and recombination proteins [BR:
mly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJ228_006230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
Motif
Other DBs
NCBI-ProteinID:
WIK83369
LinkDB
All DBs
Position
complement(1416992..1420882)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSTDNSFGLMRIGLATAEDIRRWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSKVRRDRMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEEARHKDLPNLQAEHDQETRVLAEQRDADIAAIAGDLEKD
LAKLESEGAKAAEKKKARDAADKTMAQIRKRADAELDRKEQVWDRFKNLKVADLEGDEGL
YRAMRDKYGQYFTGAMGAEAIQKRLETFDLEAEAEMLRETIKTGKGQRKTRALKRLKVVN
AFLTTDNSPEGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERFR
PQVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCSAFNADFDGDQ
MAVHLPLSPEAQAEARLLMLSSHNILKPSDGRAVAVPAQDMIIGLNHLTTVREDEVGAGR
EFSSVAEAIMAFDAGELHLNAPARIAVEGFVPSAAVSAPEEWNEGEPALIETTLGKVIFN
DLLPADYPWLDTQATKGTLGKLVNDLAERYPMAVTAQTLDNLKDAGFYWGTWSGVTVAIS
DITSDMDKAAIMEGYEEQARRVQAQYDKGLIADDERRSELIDIWNKATDEVAEAMRAGLP
TLNTINRMVTSGARGNWLQVRQIAGIRGLVANPQGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALKTANSGYLTRRLVDVSQDVIVREEDCGTERGLAVTIAVADANGELRQHE
TVENSAFARTLATDVEVDGTVVAKGGADVGDVLIGELVAAGVTEIKVRSVLTCESAVGTC
AKCYGRSMATGQMVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRIQE
LFEARTPKGMAPISEVAGRVTVEDDETSIRLILTPDDGSEEIAYPVLRRARLLVEDGEHV
AVGTQLVAGAVDPKQVLRVLGPRAAQRFLVDEVQNVYQSQGVGIHDKHVEVIVRQMLRRI
TVIESGETDLLPGELTDRVRFVAANRAAVSEGRQPASGRDELMGITKASLATDSWLSAAS
FQETTRVLTQAAMEGKEDPLLGLKENVIIGKLIPAGTGLDRYTQTVVEPTEEAKANLFTS
PSGFADFDYPGLDQSMGGDFHAMTLDDYGRGGDFRA
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccactgacaactctttcggcctgatgcgcatcggcctggccacggcggaggacatc
cgccgctggtcctacggcgaggtgaagaagccggagaccatcaactaccgcaccctcaag
ccggagaaggacgggctcttctgcgagcgcatcttcggcccgacccgtgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgctgcggcgtc
gaggtgacccgctccaaggtgcgccgcgaccgcatgggccacatcgagctcgccgccccc
gtgacccacatctggtacttcaagggcgtgccctcgcgcctgggctacctgctggacctg
gccccgaaggacctcgagaaggtcatctacttcgcggcctacatgatcacctctgtagac
gaggaggcccgccacaaggacctgccgaacctgcaggccgagcacgaccaggagacccgt
gtcctggccgagcagcgcgacgcggacatcgccgcgatcgccggtgacctggagaaggac
ctggccaagctggagtccgagggcgccaaggccgcggagaagaagaaggcccgcgacgcc
gcggacaagaccatggcgcagatccgcaagcgtgcggacgcggagctggaccgcaaggag
caggtctgggaccgcttcaagaacctcaaggtcgccgacctcgagggcgatgagggtctc
taccgcgccatgcgcgacaagtacggccagtacttcaccggtgccatgggcgcggaggcc
atccagaagcgcctggagaccttcgacctcgaggccgaggccgagatgctgcgcgagacc
atcaagaccggcaagggccagcgcaagacccgcgccctgaagcgtctgaaggtcgtcaac
gcgttcctgaccacggacaactccccggagggcatggtcctcgacgcggtcccggtgatc
ccgccggagctgcgcccgatggtccagctggacggcggccgcttcgcgacctccgacctc
aacgacctctaccgtcgcgtgatcaaccgcaacaaccgcctgaagcgcctgctcgacctc
ggtgcccccgagatcatcgtgaacaacgagaagcgcatgctccaggagtccgtggactcc
ctgttcgacaacggccgtcgcggccgcccggtcaccggtccgggcaaccgcccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctgaagctgcaccag
tgcggcctgccgaagcagatggcgctggagctgttcaagccgttcgtgatgaagcgcctc
gtggacctgaaccacgcgcagaacatcaagtccgccaagcgcatggtggagcgtttccgc
ccccaggtgtgggacgtgctcgaagaggtcatcaccgagcacccggtgctgctgaaccgc
gcacccaccctgcaccgtctgggcatccaggccttcgaaccgcagctcgtcgagggcaag
gccctccagctgcacccgctggtctgctcggcgttcaacgcggacttcgacggcgaccag
atggcggtccacctgccgctgtcgccggaggcccaggccgaggcccgactgctcatgctc
tcgagccacaacatcctgaagccgtcggacggccgcgccgtggccgtccccgcacaggac
atgatcatcggcctgaaccacctgaccaccgtccgcgaggacgaggtcggcgccggccgc
gagttctcctcggtcgccgaggccatcatggccttcgacgccggcgagctgcacctgaac
gccccggccaggatcgcggtggagggcttcgtgccctcggccgccgtgtccgctcccgag
gagtggaacgagggtgagcccgccctgatcgagacgaccctgggcaaggtcatcttcaac
gacctgctgccggccgactacccgtggctggacacccaggccaccaagggcaccctcggc
aagctggtcaacgacctggccgagcgctacccgatggccgtcaccgcccagacgctggac
aacctcaaggacgccggcttctactggggcacctggtcgggagtcaccgtggccatctcc
gacatcacctcggacatggacaaggccgccatcatggagggctacgaggagcaggcccgc
cgtgtgcaggcccagtacgacaagggcctcatcgcggacgacgagcgtcgctccgagctg
atcgacatctggaacaaggcgaccgacgaggtcgccgaggccatgcgtgccggcctgccg
acgctgaacaccatcaaccgcatggtgacctccggtgcacgaggcaactggctccaggtg
cgccagatcgcgggcatccgcggcctggtggcgaacccgcagggcgagatcatcccgcgt
ccgatcaagtcctcctaccgcgagggcctgtccgtgctcgagtacttcatcgcgacccac
ggcgcccgcaagggcctcgcggacaccgcgctgaagaccgcgaactcggggtacctgacc
cgacgtctcgtggacgtctcccaggacgtcatcgtccgcgaggaggactgcggcaccgag
cgcggcctggctgtgaccatcgccgtggccgacgccaacggcgagctgcggcagcacgag
acggtggagaactcggcgttcgcccgcaccctggcgaccgatgtggaggtcgacggcacg
gtggtggcgaagggcggcgccgacgtgggcgacgtcctgatcggcgagctcgtggccgcc
ggcgtgaccgagatcaaggtgcgctccgtgctcacctgcgagtccgccgtgggcacctgc
gcgaagtgctacggccgctccatggccaccggccagatggtggacatcggcgaggcggtg
ggcatcatcgccgcccagtcgatcggtgagccgggcacccagctgaccatgcgtaccttc
cacaccggcggtgtggcgtccgcggacgacatcacgcagggtctgccgcgtatccaggag
ctgttcgaggcccgcacgccgaagggcatggccccgatctccgaggtcgccggccgtgtg
accgtcgaggacgacgagacctcgatccgcctgatcctgactccggacgacggctccgag
gagatcgcctacccggtgctgcgccgtgcgcgcctgctggtggaggacggcgagcacgtg
gccgtgggcacccagctggtggccggtgcggtggacccgaagcaggtgctgcgcgtgctc
ggcccccgagctgcccagcgcttcctcgtggacgaggtgcagaacgtgtaccagtcccag
ggtgtgggcatccacgacaagcacgtggaggtcatcgtccgccagatgctgcgtcgcatc
actgtgatcgagtccggtgagaccgacctgctgccgggcgagctgaccgaccgcgtccgc
ttcgtggccgccaaccgcgccgccgtgtccgagggccgtcagccggcctccggccgtgac
gagctcatgggcatcaccaaggcctcgctggcgaccgactcgtggctgtccgccgcgtcc
ttccaggagacgacccgcgtgctcacgcaggccgccatggagggcaaggaggacccgctg
ctgggcctgaaggagaacgtgatcatcggcaagctgatcccggccggcaccggcctggac
cgctacacccagaccgtggtggagccgaccgaggaggcgaaggcgaacctgttcacctcg
ccctccggcttcgcggacttcgactacccgggcctggaccagtccatgggcggcgacttc
cacgccatgaccctggacgactacggccgcggcggcgacttccgcgcctga
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