Micrococcus lylae: CJ228_006235
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Entry
CJ228_006235 CDS
T09111
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mly
Micrococcus lylae
Pathway
mly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJ228_006235 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mly03021
]
CJ228_006235 (rpoB)
03400 DNA repair and recombination proteins [BR:
mly03400
]
CJ228_006235 (rpoB)
Enzymes [BR:
mly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJ228_006235 (rpoB)
Transcription machinery [BR:
mly03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJ228_006235 (rpoB)
DNA repair and recombination proteins [BR:
mly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJ228_006235 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WIK81223
LinkDB
All DBs
Position
complement(1420963..1424469)
Genome browser
AA seq
1168 aa
AA seq
DB search
MVASSTSNETASVSPRSGASAGRISFAKIAEPLDVPDLLALQTDSFDRLVGNERWAARAE
QAQAAGDHSVPVTSGLTDIFEEISPIEDFQETMSLSFSEPEFADAKMPEEECKERDATYA
APLYVKAEFMNNTTGEIKQQTVFMGDFPLMTKNGTFIINGTERVVVSQLVRSPGAYFERT
PDKTSDKEIFSAKIIPSRGAWFELEVDKRDQVGVRLDRKRKQPVTVLLKAMGWTESRILE
EFGQYDSIRATLEKDGTADQDEALLDIYRKLRPGEPAAVDAAQTLLNNLYFTPKRYDLAK
VGRYKLNRKLGVDVPLSDPHSTVLTEDDVAQMVHFICALHAGESTIKGTHDGEDVDVRVE
IDDIDHFGNRRIRAVGELIENQIRTGLSRMERVVRERMTTQDVEAITPQTLINIRPVVAS
IKEFFGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPI
ETPEGPNIGLIGSLATFGRINSFGFIETPYRRVEDGRVTDKVDYLTADDELGCQIAQANA
PVGEDGRFIEDLVLCRQRGGGGEPVLSAVDDIDYMDVSPRQMVSAATALIPFLEHDDANR
ALMGANMQRQAVPLLQSEAPYVGTGMEKYVAVDAGDSVTATAAGVVTEVAADLVTVMNDD
GTTTHYPIMKFARSNQGNAYNQRVRVSEGDRVEPLSIIADGPATDNGELALGKNLLVAFM
PWEGLNYEDAIILSQRMVSDDVLTSIHIEEYEVDARDTKLGAEEITRDIPNVSDEVLSQL
DERGIIHIGAEVEAGDILVGRVTPKGETELTPEERLLRAIFGEKSREVRDTSLKVPHGES
GTVIGVRIFDRDEDDDLPPGVNQLVRVYVAQKRKITDGDKMAGRHGNKGVISKILPVEDM
PFLADGTPVDVILNPLGVPGRMNLGQVMELHLGWAASRGWDIQGEPEWIKDLPNFPRQSG
PVNVATPVFDGAEAYEIEGLLGHVNVTPDGERLMGTDGKARLFDGRTGEPFPDPISVGYM
YMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEL
LTIKSDDIHGRVKVYEAIVKGENIPEPGVPESFKVLIKEMQSLCLNVEVLSADGQTVEMR
DSDDESFRAAEELGIDLSHAEPSSVEEV
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgcctcgagcacctccaacgaaaccgcttccgtctccccgcgttccggcgcctcc
gccggtcgcatctccttcgccaagatcgccgagccgctggacgtgcccgatctgctggcg
ctgcagaccgactccttcgaccgcctcgtcggcaacgagcgctgggccgcgcgcgccgag
caggcccaggccgccggcgaccactccgtgccggtgacctccggcctcacggacatcttc
gaggagatctccccgatcgaggacttccaggagaccatgtccctgtcgttctccgagccg
gagttcgcggacgcgaagatgccggaggaggagtgcaaggagcgcgacgccacctacgcc
gcgccgctgtacgtcaaggccgagttcatgaacaacacgaccggcgagatcaagcagcag
accgtcttcatgggcgacttcccgctcatgaccaagaacggcaccttcatcatcaacggc
accgagcgcgtcgtcgtgtcccagctggtccgctccccgggcgcctacttcgagcgcacc
ccggacaagacctcggacaaggagatcttctccgccaagatcattccctcgcgcggcgcc
tggttcgagctcgaggtggacaagcgcgaccaggtgggcgtccgcctggaccgcaagcgc
aagcagccggtgaccgtgctgctcaaggccatgggctggaccgagtcccgcatcctcgag
gagttcggccagtacgactccatccgcgccaccctggagaaggacggcaccgcggaccag
gacgaggccctgctcgacatctaccgcaagctgcgcccgggagagccggccgccgtggat
gccgcccagaccctgctgaacaacctgtacttcaccccgaagcgctacgacctggcgaag
gtgggccgctacaagctcaaccgcaagctgggcgtggacgtgccgctgtccgatccgcac
tccactgtgctgaccgaggacgacgtggcccagatggtgcacttcatctgcgccctgcac
gccggcgagtccaccatcaagggcacccacgacggcgaggacgtggacgtgcgcgtcgag
atcgacgacatcgaccacttcggcaaccgccgcatccgcgccgtgggcgagctgatcgag
aaccagatccgcaccggcctgtcccggatggagcgcgtcgtgcgtgagcgcatgaccacc
caggacgtcgaggcgatcaccccgcagaccctgatcaacatccgcccggtcgtggcgtcg
atcaaggagttcttcggcacctcccagctgtcccagttcatggaccagaacaacccgctg
gccggcctgacgcacaagcgtcgcctgtccgcgctcggcccgggcggcctctcgcgcgac
cgtgccggcatggaggtccgcgacgtccacccgtcgcactacggccgcatgtgcccgatc
gagacccctgaggggccgaacatcggcctcatcggctcgctcgcgaccttcggtcgcatc
aactccttcggcttcatcgagaccccgtaccgtcgcgtcgaggacggcagggtcaccgac
aaggtcgactacctgaccgcggacgacgagctcggctgccagatcgcgcaggcgaacgcg
ccggtgggcgaggacggccgcttcatcgaggacctggtcctctgccgtcagcgcggcggc
ggcggcgagccggtgctgtccgctgtggacgacatcgactacatggacgtctccccgcgc
cagatggtgtcggccgcgaccgccctgatccccttcctcgagcacgacgacgccaaccgc
gcgctcatgggcgccaacatgcagcgccaggccgtgccgctgctgcagtccgaggccccg
tacgtgggcaccggcatggagaagtacgtggccgtggacgccggcgactccgtgacggcc
accgcggccggcgtcgtgaccgaggtggccgccgacctggtgaccgtcatgaacgacgac
ggcaccaccacgcactacccgatcatgaagttcgcccgctcgaaccagggcaacgcgtac
aaccagcgcgtgcgtgtgtccgagggcgaccgcgtggagccgctgagcatcatcgccgac
ggccccgccaccgacaacggcgagctcgccctgggcaagaacctgctcgtggcgttcatg
ccgtgggagggcctcaactacgaggacgccatcatcctgtcccagcgcatggtctccgac
gacgtgctgacctcgatccacatcgaggagtacgaggtcgacgcccgtgacaccaagctg
ggcgccgaggagatcacccgggacatcccgaacgtgtccgacgaggtgctgtcccagctc
gacgagcgcggcatcatccacatcggcgccgaggtggaggccggcgacatcctcgtcggc
cgtgtcaccccgaagggcgagaccgagctgaccccggaggagcgcctgctgcgcgccatc
ttcggcgagaagtcccgcgaggtgcgcgacacctcgctgaaggtgccccacggcgagtcc
ggcaccgtcatcggcgtgcgcatcttcgaccgcgacgaggacgacgacctgcctccgggc
gtgaaccagctggtccgcgtctacgtcgcgcagaagcgcaagatcaccgacggagacaag
atggccggccgtcacggcaacaagggcgtcatctccaagatcctgccggtggaggacatg
ccgttcctcgccgacggcaccccggtggacgtcatcctgaacccgctcggcgtgccgggc
cgaatgaacctcggccaggtcatggagctgcacctgggctgggccgcctcccgcggctgg
gacatccagggtgagcccgagtggatcaaggacctgccgaacttcccgcggcagtccgga
ccggtcaacgtcgccaccccggtgttcgacggtgccgaggcctacgagatcgagggcctg
ctgggccatgtcaacgtgacccccgacggcgagcgcctgatgggcaccgacggcaaggcc
cggctgttcgacggccgcaccggcgagccgttcccggacccgatctccgtcggctacatg
tacatgctgaagctgcaccacctcgtggacgacaagatccacgcgcgctccaccggcccg
tactcgatgatcacccagcagccgctcggcggaaaggcccagttcggtggccagcgcttc
ggcgagatggaggtgtgggcgctcgaggcgtacggcgccgcgttcaccctccaggagctg
ctgaccatcaagtccgacgacatccacgggcgtgtgaaggtgtacgaggccatcgtgaag
ggcgagaacatcccggagccgggcgttccggagtccttcaaggtcctcatcaaggagatg
cagtccctgtgcctcaacgtggaggtcctctccgcggacgggcagaccgtcgagatgcgt
gactcggatgacgagagcttccgggccgccgaggagctgggcatcgacctgtcccacgcc
gagccgagctcggtcgaggaagtctga
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