Methylophaga marina: GCM100_10270
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Entry
GCM100_10270 CDS
T09183
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GCM100_10270 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmaf03021
]
GCM100_10270 (rpoB)
03400 DNA repair and recombination proteins [BR:
mmaf03400
]
GCM100_10270 (rpoB)
Enzymes [BR:
mmaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GCM100_10270 (rpoB)
Transcription machinery [BR:
mmaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GCM100_10270 (rpoB)
DNA repair and recombination proteins [BR:
mmaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GCM100_10270 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
BDZ73308
LinkDB
All DBs
Position
complement(1000555..1004631)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYTFTEKKRIRKDFGKRPSVLKVPNLLATQVNSYQDFLQMGVVADERGAKGLHAAFESV
FPIKSHTGMAELQYVSYRLGTPSFDVKECQLRGVTYAAPLRVKMRLVIYDKDAPAKSKVV
KDIKEQEVYMGEIPLMTEKGNFVINGTERVIVSQLHRSPGVFFDSDRGKTHSSGKILFNA
RVIPYRGSWLDFEFDPKDSVFVRIDRRRKLPATVLLRALGYNNQEILEIFFSTDSFVRKG
DNFEMKLEPQRLRGQSVPFEIVDNDGEVIVEAERQITGRHIRRMEKSGISSLTVPSTYLV
GKVIAKDMIDPETGELLASANDEITEDLLEAFARFDINEIETIYANDLDDGPFMSDTMRL
DETHSPLEAKVEIYRMMRPGEPPTEDAAENLFTSLFFTLDRYDLSSVGRMKFNRRLGREE
MEGEGTLSKEDILDVLKELIAIRNGNGVVDDIDHLGNRRVRSVGEMAENQFRVGLVRVER
AVRERLSIAESEGLMPQQLINAKPVAAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNEYGFIETPYRK
VIDGKATDEIVYLSAIDEGEYKIAQATIALNDDNSIAENMVHCRYRNESSLTPSEQVQLM
DVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERVVAQDSG
VMVTAKRGGVVDSVDASRIVIRVNDAETEGSESGVDIYNLIKYARSNQSTCINQRPIVKP
GDVVGAGDVLADGPSTDKGELALGQNILVAFMPWNGYNFEDSILVSERVVEEDRFTTIHI
QELNCLARDTKLGTEEVTSDIPNVSESALAKLDESGIVYVGAEVKPGDILVGKVTPKGET
QLTPEEKLLRAIFGEKAADVKDSSLRVPSGTYGTVIDVQVFTRDGVEKDERTREIEKAEL
EKVWADLKDQNRIMVEDVFERLERALVGKVAEGGPNLKAGTKLTKDYLAGLEHAKWFDLR
MESEELNTQLEQANAHLKQYRLEMEEAFELKKEKLTSGHDLAPGVQRMVKVFLAVKRRIQ
PGDKMAGRHGNKGVISNIVPVEDMPYTEDGRPVDIVLNPLGVPSRMNIGQILEVHLGWAA
RGLGYRIQEMLEQQKSIADLRGFLDKVYNTSGTKEDLDSLSDDEVIELAKNLQGGVPMAT
PVFDGADEDEIKNMLELAGLPRSGQAKLIDGRTGDFFHRPVTIGYMHMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVNGRTKI
YKNIVDGDYRMDAGMPESFKVLTREIRSLGIDVDLVDE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctatacgtttaccgagaaaaaacggattcgtaaagattttggcaagcgtccaagt
gtcttgaaagttccaaaccttctagctacccaggtgaattcctatcaggatttcctgcag
atgggcgtcgttgcagatgagcgcggagcaaaaggcttacatgccgcatttgaatctgtg
ttccctatcaagagccatacaggcatggcagagctacagtatgtcagctatcgtttaggc
actccatcatttgacgttaaagaatgtcaactgcgcggtgtaacctatgccgcaccttta
agagttaaaatgcgtcttgtcatctatgacaaagatgcccctgcaaagtcaaaagtcgtc
aaagacattaaagagcaggaagtatatatgggagaaatcccgttaatgactgaaaaaggt
aactttgtcattaacggaactgagcgtgtcatcgtgtcgcaactacaccgttcacctggt
gtgttcttcgacagtgaccgcggtaaaactcactcttccggtaaaatcttattcaacgca
cgcgtgatcccttaccgtggttcatggctagattttgaatttgatccaaaagattcagta
tttgttcgtattgatcgtcgtcgtaaactccctgcaactgttctactgagagcattgggt
tataacaaccaagaaatccttgagattttcttcagtacagatagctttgtccgcaaaggt
gataacttcgaaatgaagctagagccacaacgtttacgtggccaatcagtaccgtttgaa
atcgttgataatgatggtgaagtcattgttgaggctgaacgccaaatcactggccgtcac
atccgtcgtatggaaaagtcaggtattagttcgctgaccgttccatcaacttatcttgtc
ggcaaagtcatcgccaaagacatgattgacccagaaacgggtgaattactggcttctgct
aatgatgaaatcaccgaagatctgttagaagcatttgctcgtttcgatatcaatgaaatt
gaaaccatctatgctaatgatctggatgatggtccgttcatgtctgacacaatgcgttta
gatgaaacacatagcccattagaggcaaaagtagaaatctatcgcatgatgcgcccaggt
gaaccaccaactgaagatgctgctgaaaacttattcactagcctattctttacattagat
cgttacgatttatctagcgtcggtagaatgaaattcaaccgtcgcctgggtcgtgaagaa
atggaaggtgaagggactttatctaaagaagatatcctggatgtcctgaaagaactaatc
gctatccgtaacggtaatggtgttgtcgatgatatcgatcacttaggcaaccgtcgtgta
cgtagtgttggtgaaatggctgaaaaccagttccgtgttggtttggtccgtgttgaacgt
gctgtacgtgaacgtttgagcatcgctgaatcagaaggcttaatgccacaacagctgatc
aatgcaaaacctgtagctgctgcaattaaagagttctttggttcaagtcagctttcacag
ttcatggaccagaacaatccattatcagaagttacacataaacgtcgtgtttctgcgtta
ggcccaggtggcctgactcgtgaacgtgcaggcttcgaagtgcgtgacgtacatccaacg
cactacggtcgtgtgtgtccaatcgaaacacctgaaggtccaaacatcgggttgatcaac
tcgctggcgacttatgctcgtaccaacgaatatggctttatcgaaacaccatatcgtaaa
gtcatcgatggtaaagcgacagatgaaattgtctatctgtctgctatcgatgagggtgag
tataaaattgctcaggcaacaattgcactgaatgatgataactctattgcagagaacatg
gttcattgtcgttatcgtaacgaatcatcactgacaccatctgaacaagtgcagttgatg
gacgtttcacctcgtcaggtggtatcggtagcagcatcattgattccattcctcgaacat
gacgatgctaaccgtgccttgatgggctcgaacatgcagcgtcaagccgtgcctacatta
cgtgctgataaacctttagttggtacaggtatcgaacgtgttgtagcacaagattctggc
gttatggttacagccaaacgtggcggtgtggtcgattctgttgatgccagccgtatcgtt
atccgcgttaatgatgcagaaactgaaggttctgaatctggtgtcgatatttataacctg
atcaaatacgctcgttctaaccaaagtacatgtatcaatcagcgtccaatcgttaaacca
ggtgatgtggttggtgcaggtgacgtacttgctgatggtccatcgacagataaaggtgaa
ttagcattaggccaaaacattctggttgccttcatgccttggaatggttacaacttcgag
gattcgattcttgtctccgagcgtgtggtcgaagaagatcgtttcaccactatccacatt
caggaactgaactgtttagcccgtgataccaagctcggcacagaagaagtgactagtgat
attcctaacgtcagtgaaagtgcactggctaaattggatgagtccggtattgtctatgtg
ggcgctgaagttaaacctggtgatattcttgttggtaaagtgactccgaaaggtgaaaca
cagttaacaccagaagaaaaactgctaagagccatttttggtgaaaaagcggcggatgtt
aaagattcatcattacgggttccatctggtacctacggtacagttattgatgtccaagtc
tttacacgcgatggtgtggaaaaagacgaacgtacacgtgaaattgagaaagcggaactt
gagaaagtttgggctgacttaaaagatcagaaccgtattatggttgaagacgtgtttgaa
cgtctggaacgtgctttagtaggcaaagttgctgaaggtggtccaaacctgaaagccggt
actaaactgactaaagactatctagctggtttagagcatgctaaatggtttgatcttcgt
atggagtcagaagaactcaatacacaacttgaacaggcgaatgcccacctgaaacagtat
cgtctggaaatggaagaagcgtttgagctgaagaaagaaaaactgacttcaggtcatgac
cttgctcctggcgtgcaacgcatggttaaagtcttcctggctgtgaaacgtcgtattcag
cctggtgataaaatggcgggtcgtcatggtaacaaaggtgttatttcaaatatcgttcct
gtggaagatatgccatataccgaagatggtcgtccggttgatatcgtactgaacccattg
ggtgtaccttcacgtatgaatatcggtcagattctggaagttcatcttggttgggctgcg
cgtggcttaggctaccgcattcaagaaatgttggaacaacagaagtctattgctgatctg
cgtggctttttggataaggtctataacactagcggtacgaaagaagatctggattcatta
tcagatgacgaagttatcgagttggctaaaaaccttcaaggtggtgtgccaatggcaacg
ccagtattcgatggtgctgacgaagatgaaatcaaaaacatgcttgaattagctgggcta
ccacgtagcggccaagcaaaattgattgatggcagaactggtgatttcttccaccgtcca
gtcactattggttatatgcacatgctgaaactgaatcacttggttgacgataaaatgcat
gcacgttctactggtccatacagcttggttacacaacaacctctgggtggtaaagcgcag
tttggtggtcagcgtttcggtgagatggaggtgtgggcactgcaagcatatggtgcagca
tacacattgcaagaaatgttaactgtgaagtcagatgatgtgaacggtcgtactaagatt
tataaaaacatcgttgatggtgattatcgaatggatgcaggtatgcctgaatcattcaaa
gtattaacccgtgagattcgctcacttggtattgatgtcgatttggtcgatgaataa
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integrated database retrieval system
