Megasphaera massiliensis: LCQ47_06050
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Entry
LCQ47_06050 CDS
T07781
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mmax
Megasphaera massiliensis
Pathway
mmax03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmax00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCQ47_06050 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmax03021
]
LCQ47_06050 (rpoB)
03400 DNA repair and recombination proteins [BR:
mmax03400
]
LCQ47_06050 (rpoB)
Enzymes [BR:
mmax01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCQ47_06050 (rpoB)
Transcription machinery [BR:
mmax03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCQ47_06050 (rpoB)
DNA repair and recombination proteins [BR:
mmax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCQ47_06050 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
UBS54732
LinkDB
All DBs
Position
complement(1280417..1284175)
Genome browser
AA seq
1252 aa
AA seq
DB search
MFKPVQVGKRTRYTYAKINEVLKMPHLLDLQNKSYEWFLEKGLKDIFKDISPIEDASGNL
SLSFEGFKLGEPKYDIRECKECDTTYAAPLRVQIRLVNHETGEIKDQEVFMGDFPLITDT
GTFIINGAERVIVSQLVRSPGVYYGREIDPMGIRLYNSTVIPNRGAWIELETDANDIIYA
RIDRNRKIPVTVLIRALGWASNSDILDLFFDDKRLKATFEKDTTENQDEALIEIYKKLRP
GEPPTVESARNLFEGLFFDPRRYDMARVGRYKAGKKLGWERRLFGLTLHEPIVNPETGEI
IVDAHTEIGSAEVEKIRESGVFHREIAADAPLGDGGGLVEAFVEKQDGSVYKVICNNSDL
PYDHRTITREDIIAHIGYLLNLMDGFGTVDDIDHLGNRRLRCVGELLQNQFRIGLTRMER
VVRERMTIQDAESITPQVLINIRPVVAAIKEFFGSSQLSQFMDQTNPLAEITHKRRLSAL
GPGGLSRERAGFEVRDVHHSHYGRMCPVETPEGPNIGLISSLACFGQVNEFGFIEAPYRR
VDKETGVVTEKVYYITADEEEQYVIAQANEPLTEDGHFVNERVACRHGEDTREFRADRVD
FMDVSPKEVVSVGTSMIPFLENDDANRALMGANMQRQAVPLLRTQAPLVGTGMEYKAACD
SGVCVLAKHSGVVSHVTGDTIEVRTDSGSIDTYKLIKFVRSNQSTCINQRPLVYKNEVVT
EGQVLADGMATDGGELALGYNILVAYMPWEGYNYEDAVLLSEELPKNDLYTSIHIEEYEC
DARDTKLGSEEITREIPNVSEESTKNLDENGIIMIGADVFPGDVLVGKVTPKGETELTPE
ERLLRAIFGDKEREVRDTSLRVPHGESGKVVNVRVFSRENNDELPPGVTRLVRVYIAQKR
KIHEGDKMSGRHGNKGVVSRVMRQEDMPFLPDGTPVQIVLNPLGVPSRMNIGQILETHLG
WAVHELGKQIKEMDPGLEERLRAAGYDFDKYGMPKPDVAGIHIATPVFDGAQAEDVFNAL
EIAGLPSDGKSVLYDGRTGEPMDRRVTVGYTYFLKLHHLVDDKIHARSTGPYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVVGRVKAYEKIVKGENIPEPGV
PESFKVLLKELQAIGLDVQILNEDGDEVVIKELDEDDETEPEKNDELRRVMEGENGPETP
AVPAEGSDENGEDDDQEPVSNGDEDDVMSEMSLDAVAEAEQADDDDTTDDDE
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaacctgtacaagtagggaaaaggactcgatacacatatgctaagattaacgag
gtcttgaaaatgcctcatttgttggatttacagaataaatcctacgaatggttcctcgaa
aagggacttaaagatatcttcaaagacatttctcctatcgaagatgcatcgggcaacctg
tctttatcctttgagggttttaaattaggggaaccgaagtacgacattcgtgaatgtaag
gaatgcgatacgacgtatgccgcaccgctccgagtccagatccgtcttgtcaaccacgaa
acaggtgaaattaaggaccaggaagtattcatgggtgacttccctctgattactgataca
ggcacgttcattatcaatggggcagaacgcgttatcgtcagtcagctcgttcgttctccc
ggtgtgtactacggtcgtgaaattgacccgatgggcatccgcctttacaattcgacggtc
attccgaaccgcggcgcctggatcgaactcgaaaccgatgctaacgatattatctatgcc
cgcattgaccgcaaccgtaagattccggttacggttctcatccgtgccctgggctgggcg
tctaattcggatatcctcgacctctttttcgacgataaacgcctgaaggctacttttgaa
aaagatacgacggaaaatcaggacgaagccttaattgaaatctataaaaaacttcgcccc
ggtgaaccgccgactgttgaaagcgcccgcaacctctttgaagggttgttcttcgatccg
cgtcggtacgatatggcccgcgtcggccgttataaagccggcaagaaactcggttgggaa
cgccgcctcttcggtctgacccttcacgaaccgattgtcaatccggaaacgggggaaatc
atcgtcgatgcccatacggaaatcggctcggcagaagttgaaaaaatccgcgaaagcggt
gtattccaccgtgaaatcgcagccgatgcccccctcggtgacggcggcggtttagtagaa
gctttcgttgaaaagcaggatggctctgtctataaggtcatctgcaataacagcgatctg
ccttatgatcaccggacgattacccgcgaagacatcatcgctcacatcggctacctcctc
aatttgatggatggttttggcactgtcgatgatatcgaccatttgggcaaccgtcgtctg
cgctgcgtcggcgaactccttcagaaccagttccgtatcggccttacccgtatggaacgt
gtcgtccgcgaacgcatgacgattcaggatgccgaaagcattacgccgcaggtcctgatc
aacatccgtcctgtcgtagccgcaattaaagaattcttcggttccagccagctgtcccag
ttcatggaccagaccaatcccttggctgaaattacacataaacgccgtctgagcgccctt
ggtcccggcggtttgtcccgtgaacgcgcaggctttgaagtccgcgacgtccatcattcg
cactatggccgcatgtgcccggtagaaacgccggaaggtccgaacatcggcctcatttcc
tccctggcttgcttcggtcaggtcaatgaattcggtttcattgaagctccgtaccgtcgc
gtcgacaaagaaacgggcgtcgtaacggaaaaggtttactatattacggctgatgaagaa
gaacagtacgtcattgcccaggctaatgaaccgcttaccgaagacggccatttcgtcaac
gaacgcgttgcctgccgtcacggggaagatactcgtgaattccgggctgaccgcgtcgac
ttcatggacgtatcgccgaaggaagtcgtatctgtcggtacttccatgatccccttcctt
gaaaacgatgatgctaaccgtgccctcatgggtgcgaacatgcagcgtcaggctgtaccg
ctcctccgtacccaggctccgctcgtcgggaccgggatggaatataaggcagcctgtgac
tccggggtctgcgtcctggcaaaacacagcggcgtcgtatcccacgttaccggtgatacc
atcgaagtccgtactgattccggctcgatcgatacgtataaactgattaaattcgttcgt
tccaaccagagtacctgcatcaaccagcgtcctttggtttacaaaaatgaagtcgttacc
gaaggtcaggtcctggccgacggcatggcaaccgacggcggtgaattagccctcggctat
aacatcctcgtagcctatatgccttgggaaggttacaactacgaagacgccgttctcctc
agtgaagaattgccgaagaacgacctctatacttctatccatattgaagaatatgaatgc
gatgcccgcgatacgaaactcggctctgaagaaatcactcgtgaaatccctaatgtcagc
gaagaaagcacgaagaacctcgatgaaaacgggattatcatgatcggtgccgacgtattc
cccggcgacgtcctggtcggtaaagttacgccgaaaggcgaaacggaactgactccggaa
gaacgtctcctgcgtgccattttcggcgataaggaacgtgaagtccgtgatacgtccctg
cgcgttccccacggggaatcgggcaaggttgtcaacgtccgcgtattctcccgtgaaaac
aacgacgaactgccgcccggcgtaacccgtttggttcgtgtctacatcgctcagaaacgt
aagattcacgaaggcgataagatgtccggtcgtcatggtaacaagggtgtcgtctcccgc
gtcatgcgtcaggaagacatgccgttcctgcccgatggcacgccggtccagatcgtcctg
aaccccttgggcgtaccgtctcgtatgaatatcggtcagattttggaaactcaccttggc
tgggctgtccatgaattgggcaagcagatcaaggaaatggatccgggtctggaagaaaga
ctgcgtgctgccggttatgactttgataagtacggcatgccgaaaccggatgtcgccggg
attcatattgccacaccggtctttgacggcgctcaggctgaagacgtatttaatgcactc
gaaatcgcaggtctccccagtgacggcaagtccgtcctctatgacggccgtacgggcgaa
ccgatggatcgccgcgtcactgtcggctatacatacttcctgaaactgcatcacctcgtc
gacgacaagatccatgctcgttcgacaggcccgtactccttggttacgcagcagcctctc
ggcggtaaagcccagttcggcggccagcgtttcggggaaatggaagtttgggctctggaa
gcttacggtgcagcctataccctccaggaaatgcttacggttaagtctgacgatgtcgtc
ggccgtgtcaaggcttacgaaaagatcgtcaaaggcgaaaacattccggaaccgggtgtg
ccggaatcgttcaaggtactcctcaaggaactccaggctatcggcctcgatgtccagatt
ctcaatgaagacggcgatgaagtcgtcatcaaggaacttgacgaagacgatgaaacagaa
ccggaaaagaacgacgaactccgtcgcgtcatggaaggtgaaaatggcccggaaactccg
gcagtacctgctgaaggcagtgatgaaaacggcgaagatgacgatcaggaacccgtttct
aacggtgacgaagatgacgtcatgagcgaaatgagcctcgatgccgttgccgaagcagaa
caggctgacgatgatgatactactgacgatgatgaataa
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integrated database retrieval system
