Malurus melanocephalus (red-backed fairy wren): 130579580
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Entry
130579580 CDS
T09178
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130579580 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmea03019
]
130579580 (CNOT1)
Messenger RNA biogenesis [BR:
mmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130579580 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130579580 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
130579580
NCBI-ProteinID:
XP_057232477
LinkDB
All DBs
Position
Unknown
AA seq
2383 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFAQLSKVIK
LSKVQEVIFGLALLNSFSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGIAKTMMESSLADFMQEVGYGFCASVEECRNIIMQFGVREVTAAQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKSDGSQAHTWNVEVLIDVLKELNPSLDFKVVTYE
LDHPGFQIRDSKGLHIVVFGIQRGLGMEVFPVNAIYRPWKHAEGQLSFIQHSLINPDIFC
FADYPCHTVATDILKAPPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHC
PDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDSLAGMASL
SLGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTQNQTTGFSGIGGLSSQLPVGG
LTTGSLTGIGTGALGLPAVNNDPFVQRKLSTSGLNQPTFQQSKMKPSDLSQVWPEANQHF
SKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYR
FFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFASKMYYFGIAALDR
FKNRLKDYPQYCQHLASISHFIQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQA
QAQAQVPAKAPLAGQVSTIVTTSTTTTVAKTITITRPTGVSFKKDVPPSINTTNIDTLLV
ATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVS
IEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLG
MITMAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSVRSVVFRPPNPWTM
AIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGSLLKDKDRLKNLDEQLSAPK
KDVKQPEELPPITTTTASTTPATSTTCTATVPPQPQYSYHDINVYSLGGLAPHITLNPTI
PLFQAHPQLKQCVRQAIERAVQDLVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVA
AHHMMRNLTAGMAMITCREPLLMSIATNLKNSFATALRAASPQQRDMMEQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLTQPTGFLAQPMKQAWATDDVAQIYDKCMTELE
QHLQSIPHTLAMNPQVQALRSLLEAVVVARNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQVELLERKMHQQGILKTDDLITRFFRLCTEMCVEISYRA
LAEQQHNPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGV
LLQDHDVRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPG
FVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYK
GTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVD
MLSEINIAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNIQ
LINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQ
LRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNP
AFKFWNHEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaataggcacggt
ccggaggcagacaggcatttactacgctgtctattctcgcacgtggatttcagtggcgat
ggtaaaagcagtggcaaagattttcatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcatacgccattgacaatcccttgcac
tatcagaagagtctaaagccttcaccccatttatttgcccaattgagtaaagtcatcaaa
ttaagtaaagttcaagaggtgatttttggtctcgctttactgaactctttcagctcagat
ctgcgaggttttgctgcccagtttatcaaacagaaactcccggatcttttgcgctcttac
attgacgcggacgtcagtggaaatcaagaaggtggcttccaagatattgcaatagaggtc
ctgcaccttctcctctcccatctcctctttgggcagaagggagcctttggggtaggacag
gagcagattgacgctttcctcaaaacattacgtagagattttccccaggagcgttgccct
gtggtgcttgcaccacttctataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggagggatagccaaaaccatgatggagagttctctggcagatttcatgcaa
gaagttggctatggcttttgtgcaagcgttgaagaatgtcgcaacataatcatgcagttt
ggtgttcgggaagtcacggctgcccaggttgccagggttttggggatgatggctcgaact
cattcaggattgacagatggtattccattacaatctatttcggctcctggtagtgggatt
tggagtgatggcaaagataagagtgatggcagccaagcccatacctggaatgtggaggtc
ttgattgaygttcttaaagagctgaatcctagcctggacttcaaagtagtaacatatgaa
ttggaccatccaggatttcagattcgtgacagcaagggcctgcatattgtagtctttggt
atccagagaggrctgggcatggaggtttttccagttaatgccatatacagaccttggaag
catgcagagggccagctctccttcatccaacattccctcataaaccccgacatcttctgt
tttgctgactacccttgccatactgttgccacggacatcctgaaagcaccaccagaggat
gacaatcgagaaattgctacatggaagagcctggatttgattgagtctctgttacgattg
gcagaagtggggcagtatgaacaggttaagcagctcttcagttttcctatcaagcattgc
ccagatatgctggtattggccttattgcagatcaacacgtcmtggcataccttgcgccac
gaactcatctccacactcatgccaattttccttggcaaccatcccaactcagccatcatt
ttgcactatgcatggcatggacagggtcagtctccttcaattcgtcagcttatcatgcat
gccatggcagaatggtacatgagaggggagcagtatgaccaggcaaaattgtcacgtatt
cttgatgtggcgcaagacttgaaggccttgtcaatgctgctaaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgacgggaatacctcaaacttgacaaatgg
ctcacagataaaattcgggagcatggggaacctttcatccaggcctgtatgactttcttg
aagagaagatgtccatctatcctgggtggccttgctcctgagaaagatcagcccaaaagt
gctcagcttcctccagaaaccctggcaactatgttggcctgtctgcaagcttgtgctggg
agtgtttctcaggagctgtcagagacgatcctcaccatggtagcaaactgcagtaatgtc
atgaacaaggctcggcagcccccacctggagtcatgcccaaaggacgcccgcccagcgcg
agcagcttggatgccatctctcctgtgcagatcgactcgcttgcaggaatggcttctctt
agtttgggtggctccgctgctcctcacacccagagcatgcaaggcttccctccaaacttg
ggctctgcgttcagtactcctcagtcaccagcaaaagcgttcccacctctctccacccaa
aaccagacaacaggtttcagtggcattggaggactctcttcacagcttccagtaggtggt
cttactacgggtagcctgactggcataggaactggagccctgggccttcctgcagtgaac
aatgacccattcgtacaaaggaagctgagcacatctggactgaaccagcctacattccag
cagagtaagatgaaaccttctgacttatctcaggtgtggccagaggctaatcagcacttt
agcaaagaaatagatgatgaggcaaacagctacttccagcgtatttacaaccatccacca
cacccaaccatgtctgtggatgaggtcttggaaatgctgcagaggtttaaggactccaac
attaaacgggaacgagaagtgtttaactgtatgctgaggaacttgtttgaggaatatcgc
ttctttccccagtacccagataaagagctgcacataacagcctgtctttttgggggcata
atagagaaaggactggttacttacatggcattgggcctggccctacgctatgttcttgaa
gccttacgaaagccttttgcatccaaaatgtactattttggtattgctgcactagataga
tttaaaaatagattgaaggactatccccagtattgtcagcacttggcttctattagtcac
tttatacagtttccgcatcatttacaggagtacatagaatatggacagcaatccagagat
cctcctgtgaagatgcagggttcaatcaccacccctggaagtattgcacttgcccaggct
caggcccaggcccaggttccagcaaaagctccacttgctggccaagtcagcactatagtg
accacctcaaccaccaccactgttgcaaaaaccattacaatcacccgaccaactggagtc
agcttcaagaaagatgtgccgccttccattaatactaccaacattgatacgctgttagta
gcaacagatcaaacagagagaattgtggagcctccagagaatgtccaggaaaaaattgct
ttcatcttcaataatctgtctcagtcaaatatgacacagaaggtggaagaattgaaagaa
acagtgaaagaagagttcatgccttgggtatcacagtatctggtgatgaaaagagtcagt
attgagcctaactttcacagcttgtattcaaacttccttgacacacttaagaatcctgag
tttaataaaatggttctgaatgaaacctacagaaatatcaaggtgctattgacatcagat
aaagctgcagccaacttctcagaccgttccttgttaaagaaccttggtcactggctggga
atgattacaatggctaaaaataagcccatcttgcacacggatttggatgtgaagtcgcta
ytactggaagcatacgttaagggacagcaagaattgctttatgtagtgccatttgttgcc
aaagtyttagaatccagcgtcaggagtgtggtcttcaggcctccaaatccgtggacaatg
gccattatgaatgttttagctgagctacatcaagaacatgatctaaaattgaatctgaag
tttgagattgaggtgctctgcaaaaatcttgcactagacatcaatgagctgaaacctgga
agtctcytgaaagataaggatcgtctgaaaaatctggatgagcagttgtctgctccaaag
aaggatgtgaagcagccagaagagctaccacccatcacaacaactactgcttctacaact
ccagctacaagcaccacttgtacagccacggttcctccacagccccagtacagttatcat
gacatcaacgtctattctttaggagggttggctccacatattaccttaaayccaacgatt
cctcttttccaagcccacccgcagctgaagcagtgtgtgcggcaggcgatcgagcgtgcg
gtgcaagacctcgtccatccsgtggttgatagatccatcaagattgccatgacaacctgt
gagcagatagtcaggaaggactttgccctggattcagaggagtcacggatgcgtgtggcc
gctcaccacatgatgcggaacctgactgctgggatggccatgatcacctgcagggarcct
ttgctgatgagcattgctaccaacttgaaaaacagctttgctactgcactgagggcagcc
tccccacagcagagggacatgatggagcaggcagctgcscagttagcgcaggataactgt
gaacttgcctgctgctttatccagaagacagctgtggaaaaagcagggcctgagatggac
aagaggctcgcaactgaatttgagctcagaaagcatgctagacaagaggggcgtcggtac
tgtgatcctgtcgtgttaacgtaccaggctgagcggatgccagaacagatcaggttaaag
gttggaggtgtggacccaaaacagctggctgtttatgargagtttgcacgcaatgtccct
ggcttcttgcctaccaatgacctaactcagcctacaggattcttggctcaacctatgaag
caagcttgggctacggatgatgtagcacaaatctatgacaaatgtatgacagaactggag
cagcacctgcagtccattccacacaccctggccatgaatcctcaagttcaagcattgcgt
agcctcttggaggcagtggtagtggctcggaactcccgggatgctattgctgcacttgga
ctactgcagaaggctgtagagggcttgctggatgccaccagtggggctgatgctgacctc
ctgctccgctatcgtgagtgtcacctgctggtgctgaaggctctrcaggatggccgtgcc
tatggatctccatggtgtaacaaacaaatcactaggtgcctgattgaatgcagagatgag
tacaagtacaacgtggaagctgtggagctgctaatccgcaatcaccttgttaacatgcag
cagtatgaccttcacttggctcagtccatggagaatggcttgaactacatggctgtggca
tttgccatgcagttggtaaagatcttgttggtggatgagagaagtgttgcccacgtaaca
gaagcagatctatttcacaccattgagacactcatgagaattaatgctcattccagagga
aatgccccggaaggattaccccagctgatggaagtggtycgatcaaactatgaagcaatg
attgaccgtgctcatggaggtcctaatttcatgatgcattcaggaatttcccaagcttct
gagtatgatgacccaccaggcctgagggagaaggcagaatacctgctgagggagtgggtg
aacctctaccattcagctgcagcaggccgtgacagtaccaaagcattctctgcgtttgtt
ggacaggtagagcttttggaaagaaagatgcaccagcaggggatcctgaaaacagatgac
ctgatcacccgktttttccgtctttgcaccgaaatgtgcgttgagatcagctatcgagcc
ctggctgagcaacagcacaatcctgcagccaaccccactatgattcgagccaagtgctac
cacaacctggatgcctttgtgcgacttattgcactgctggtgaagcactctggggaggca
accaacacagtcacaaagatcaatctgctgaataaggttcttggtattgtggtgggagtt
cttctgcaagaccatgatgttcggcagagtgagtttcagcaacttccttaccatcgcatt
ttcatcatgttgctgttggaattaaatgctcctgagcacgtgctggagaccatcaacttc
cagacactcacagctttctgtaacacatttcacatcctgaggcctacaaaagctccaggt
tttgtttatgcctggctggaactgatctcccatcggatatttattgcaagaatgctggca
catacaccacagcagaagggttggcctatgtatgcccagttgttgatcgatctattcaag
tacttggctcctttccttaggaatgtggaactcaccaaacctatgcaaattctttacaag
ggcactctgcgtgtgttgctggtcttgttgcatgatttcccagaatttctttgtgactac
cactatgggttctgtgacgtgatcccacctaactgtattcagctaaggaatctaatcctg
agtgccttcccacggaacatgaggcttccagaccctttcacccccaacctaaaggtggac
atgctgagtgagattaatattgctccacgaatactcacaaatttcactggcgtgatgcca
cctcagttcaagaaagacttggattcctatctcaaaacccgttctccagtcacctttttg
tctgacttgcgaagcaacctacaagtatcaaatgaacctggcaaccgctacaacatccag
ctgattaatgcwctggtgctctatgttggtactcaagctattgcacacattcacaacaaa
ggcagcacaccctctatgagcaccattacccactcagctcacatggacatcttccagaat
ttggcagtagacctggatactgaaggccggtacctgttcctgaacgccattgccaaccag
ctgcggtaccccaacagtcacacccactacttcagctgcaccatgctctacctgtttgca
gaggccaacacagaggctatccaggagcagatcaccagggttctcttggaacgactgatt
gtaaataggcctcatccctggggtctccttatcactttcattgagctgataaaaaatcca
gcatttaagttctggaaccatgagtttgttcactgtgctccagaaattgagaagttgttc
cagtcggttgcacagtgctgcatggggcagaagcaggcccagcaagtcatggaagggact
ggtgccagttag
DBGET
integrated database retrieval system
