Methylophilus medardicus: FIU01_01660
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Entry
FIU01_01660 CDS
T10472
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mmec Methylophilus medardicus
Pathway
mmec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIU01_01660 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmec03021
]
FIU01_01660 (rpoB)
03400 DNA repair and recombination proteins [BR:
mmec03400
]
FIU01_01660 (rpoB)
Enzymes [BR:
mmec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIU01_01660 (rpoB)
Transcription machinery [BR:
mmec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIU01_01660 (rpoB)
DNA repair and recombination proteins [BR:
mmec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIU01_01660 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QDC43351
UniProt:
A0A5B8CQ36
LinkDB
All DBs
Position
343339..347511
Genome browser
AA seq
1390 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRDSVQEVPYLLAMQLESYKSFLQENVPADQRKNEGLESTFRSI
FPIVSHSENARLDYVSYQLGAEPFDVKECQQRGLTYAVPLRVKVRLTIMDREASKPTVKE
VKEQEVYMGELPLMTENGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLKALGYNPEQILETFHDTDTFHIGPKG
VEFELVADRLRGEVAKFDITDKDGTVLVAKDKRITVKHIRDIEKAGVKTMAVPTDFMMGR
AVAKNIIDTETGEVIANANDEVTPSLLEKLVAAKISEIDTIYTNDLDHGNFISQTLRSDE
IPDQYSARVAIYRMMRPGEPPTEDAVEALFRGLFFTEDRYDLSVVGRMKFNRRAYPTKLE
ERTATWMRRFYENVGPQGDTGNNVLSNEDILAVIGVLIELRNGRGEIDDIDHLGNRRIRS
VGELAENQFRAGLVRVERAVKERLSQAESENLMPHDLINAKPVSSAIREFFGSSQLSQFM
DQTNPLSEITHKRRISALGPGGLTRERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSL
ALYARTNDYGFLETPYRLVEDNKVSGKIDYLSAIEESQYVIAQANTEISVDGGFKEDLIS
ARFHNEFTMTQPGRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRA
EKAVVGTGIERTVAIDSGTVVTARRGGVVDYVDSGRIVVRVHDVEALAGEVGVDIYNLTK
YTRSNQNTNINQRPLVKVGDIIARGDVVADGASTDMGELALGQNMLVGFMPWNGYNYEDS
ILISERVVADDRYTSIHIEELSVVARDTKLGPEEITRDISNLSERMLGRLDDSGIIYIGA
EVEAGDVLVGKVTPKGETTLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFT
REGIDRDTRAQQIIDDQLSHYKKDLGDQMRIVEDDTFGRISRLLNGKAATGGPNKLKKGD
TLTQEYLESVGRYDWFDIRLSDEDAARQLEQLKDSLSQARIEFDNKFEEKKRKLTQGDEL
PPGVQKMVKVYLAVKRRIQPGDKMAGRHGNKGVISKICPVEDMPHMADGTPLDIVLNPLG
VPSRMNIGQILETHLGWAAKGLGKRLGDMLQAEAKVAEIRAFLDKIYNSSTGKKEDIAGL
TDVEVIDLATNLKLGVPFATPVFDGAAESDIRAMLDLAFPDDDEHTKKLQFHAGKTQVKL
FDGRTGDAFERPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGASYTLQEMLTVKSDDVNGRTKVYENIVKGEHKIDAGMPESFNVLVKEIRS
LAIDIDLDRN
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgagctattcctttaccgaaaagaaacgcatccgcaaaagctttgctaagcgcgacagt
gttcaagaggtaccttacctgctagccatgcagttggaatcctataaatcattcctgcag
gaaaatgtacccgcagaccaacgtaaaaacgagggtcttgagtccactttccgttccatt
ttcccgattgtcagtcattcagagaatgcacgtctggactatgtgagctaccaattaggc
gcagagccttttgacgttaaagagtgtcaacaacgtggtttgacctatgcagtgccactg
cgtgtcaaagtgcgcctgaccattatggaccgtgaagcgtccaaacctacggttaaagaa
gtcaaggaacaagaagtgtacatgggtgaattgccgctcatgaccgagaatggttctttt
gtgattaatggtaccgagcgtgtgattgtgtcccaattgcaccgcagccctggcgttttc
tttgagcatgatcgtggtaaaacacatagctctggcaaactgctgttctccgcccgtatc
attccttaccgtggttcttggttagattttgaatttgacccgaaagactacctgtatttc
cgtgttgaccgtcgccgcaaaatgccagtgacgatcttattgaaggcgcttggttataac
ccagagcaaattctagagactttccacgatacagacactttccatattggtcctaaaggg
gtggaatttgagctggttgcggatcgtttacgcggtgaagttgccaagtttgatattacg
gacaaagacggtacggtgctggttgctaaagacaagcgcattacagtgaagcatattcgc
gacattgaaaaagccggtgtgaaaaccatggctgtgccaaccgactttatgatgggtcgt
gcagttgctaaaaacatcatcgacactgaaaccggtgaagtgattgccaacgccaacgat
gaagtcaccccttcattgcttgaaaaattagtcgcagcaaagatttcagaaattgatacc
atctacaccaacgacttagatcatggaaatttcatttcgcaaacattgcgcagtgatgag
attccggatcaatatagcgcccgtgtagcgatctatcgcatgatgcgtccaggcgagcca
ccgaccgaagatgcggttgaagctttatttagaggtctgttcttcactgaagatcgttat
gatctgtcagtggttggtcgtatgaagtttaaccgtcgcgcctatccaaccaaattggaa
gagcgtacggcaacatggatgcgccgtttctatgagaacgtcggcccgcaaggcgacacc
ggcaacaatgtgttatcaaatgaagatattttggccgtcattggcgtgttgatcgaactg
cgcaatggccgcggtgagatcgacgatatcgaccacttgggtaaccgtcgtatccgttca
gtaggtgaattggctgagaaccagttccgtgctggcttagtgcgcgtagaacgtgcggtc
aaagagcgcttgtcgcaagcggaatcagaaaacctgatgccgcatgacttaatcaacgcc
aaaccagtgtccagcgcgatccgtgagtttttcggttctagccagttgtcacagtttatg
gaccagactaacccattatctgaaatcacgcacaaacgtcgtatttcagccttgggccca
ggcggtttaacacgtgagcgcgccggctttgaggtgcgtgacgtacataccacgcactat
ggtcgtgtttgcccaatcgaaacgccagaaggtccaaacattggtttgatcaactctttg
gccttgtatgcgcgtaccaacgactatggtttccttgaaacaccttaccgtttggtagag
gacaacaaggtctccggcaagatcgattacttgtcagcgattgaagagagccagtacgtg
attgcgcaggcaaacactgaaatctctgtagatggtggtttcaaagaggatttgatttcc
gcacgtttccacaacgaatttaccatgacgcaacccggccgcgtacagtatatggacgtg
gcgccaggtcagattgtttcggtagcggcttcactgattccgttccttgaacacgatgac
gcgaaccgtgccttgatgggtgccaacatgcaacgtcaggcggttccttgtctgcgcgct
gaaaaagcggttgtgggtactggtattgagcgtaccgtggccattgactccggtactgtc
gtgactgcacgtcgtggcggggtggtggattatgtggattcaggccgcattgtggtgcgt
gtgcatgacgtggaagcgttagctggtgaagtgggcgtagatatctacaacttaaccaaa
tacacccgatctaaccaaaacaccaacatcaaccaacgtccattggtgaaagtcggtgac
atcattgcccgcggtgacgtggttgctgatggcgcctcaaccgacatgggtgagttggcc
ctgggtcaaaacatgctggttggctttatgccttggaacggttacaactacgaagactcg
attttgatttcagagcgcgtcgtggccgatgaccgttacacctccatccatattgaagaa
ttgtctgtggtggcgcgtgataccaagttgggacctgaagagattacgcgtgatatttcc
aatttgtccgagcgtatgctgggtcgtttggatgactccggtattatctacattggtgct
gaagtggaagccggtgatgtgttggtgggtaaagtcacccctaaaggtgaaaccacttta
accccagaagaaaaattgttgcgcgccatctttggtgaaaaagcatctgacgtcaaagac
acttccctgcgcgtgccgtctggcatgacaggcacagtgattgatgtgcaggtctttacc
cgtgaggggatcgaccgtgatacccgtgcacaacagattattgatgaccaattgtcacac
tacaaaaaagatctgggtgaccagatgcgtattgtagaagacgataccttcggtcgtatc
agtcgtttgttgaatggtaaagccgcaacaggtggtccaaacaagttgaaaaaaggcgac
accctgactcaagagtaccttgagagcgtgggtcgttatgattggtttgatattcgtttg
agcgatgaagatgccgcacgtcaacttgagcaattgaaagatagcttgagccaagcgcgt
attgaatttgacaacaaattcgaagagaaaaagcgtaagctgacccaaggcgatgaattg
ccacctggtgtgcaaaaaatggtcaaggtctatctggcggttaaacgtcgtattcaacca
ggtgacaaaatggcgggtcgtcacggtaacaagggtgtgatttcaaaaatctgcccggtt
gaagatatgccgcatatggctgacggtacgccgttagatatcgtgttgaacccattgggc
gtgccttcacggatgaacattggtcagattctagaaacgcaccttggctgggcagcgaaa
ggcttgggcaagcgcttaggcgatatgctgcaagcggaagcgaaagtggctgaaattcgt
gctttcttggacaaaatctacaacagcagcactggcaagaaagaagacattgctggtttg
accgacgttgaagtgattgatttggccacaaacctgaaacttggcgtaccatttgccaca
ccagtgtttgacggggctgcagaatcagatatccgtgccatgttagatctggcgttcccg
gatgatgatgagcacaccaaaaagttgcagttccacgcaggtaaaacacaggtaaaactg
ttcgacggccgcacgggtgatgcttttgagcgtccagtcactgtcggttatatgcacgta
ttgaaactgcatcacttggttgatgacaagatgcacgcacgttctaccggtccttacagc
ctggtgacacagcagccgttgggtggtaaagcccagttcggtggtcagcgcttcggtgag
atggaagtctgggcacttgaagcctacggtgcgtcatacaccttgcaagagatgttgacg
gtgaaatcagatgacgtgaatggtcgtacaaaagtgtacgaaaacatcgtcaaaggtgag
cacaaaattgatgcgggtatgcctgaatcattcaacgtgttggtgaaagaaattcgttca
ctcgcgattgacattgatttagaccgtaactaa
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