Candidatus Mycobacterium methanotrophicum: M5I08_14915
Help
Entry
M5I08_14915 CDS
T08748
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Pathway
mmeh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5I08_14915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmeh03019
]
M5I08_14915
03009 Ribosome biogenesis [BR:
mmeh03009
]
M5I08_14915
Enzymes [BR:
mmeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M5I08_14915
Messenger RNA biogenesis [BR:
mmeh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M5I08_14915
Ribosome biogenesis [BR:
mmeh03009
]
Prokaryotic type
rRNA helicases
M5I08_14915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
Cas3-like_C_2
Surface-like_ins_dom
P-loop_SecA
adh_short
CMS1
Motif
Other DBs
NCBI-ProteinID:
UQX09636
UniProt:
A0ABY4QIJ1
LinkDB
All DBs
Position
complement(2873902..2875611)
Genome browser
AA seq
569 aa
AA seq
DB search
MASPDSATASFADLQIHPSVLQAVADVGYESPSPIQAATIPAMMAGSDVVGLAQTGTGKT
AAFAMPILSKIDTSSKVTQALVLAPTRELALQVAEAFSRYGAHLPQINVLPIYGGASYAV
QLSGLKRGAQVVVGTPGRVIDHIGRGSLDLSRVDYLVLDEADEMLNMGFAEDVERILSET
PEYKQVALFSATMPAAIRKLTAKYLHDPTEVSVKSKTATAENISQRYIQVGGPRKMDALT
RVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQSQRERTIAALKQGGSK
GLDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRER
HLLKAIEKATRQKLTEAELPSVEDVNAQRVAKFADSITDSLGSAGIELFRSLVEDYEREH
DVPMADIAAALALQSRDGEAFFMAPEPPPDRRREQREDRPAKSSRKAGEDPRKEFATYRI
AVGKRHKVGPGAIVGAIANEGGLHRSDFGHITVKPDFSLVELPARLSRETLKALERTRIS
GVLINLQPERGRDSPKRRDRGGAGREHAR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggcctccccggacagcgccaccgcgagctttgccgacctgcaaatccatccttcggtt
ttgcaggccgttgccgacgtcggttacgagtcgccgtcgccgattcaggcggcgacgatt
ccggcaatgatggccgggtcggacgtggtgggcctggcccagaccggaacgggcaagacg
gccgctttcgcgatgccgatcctgtccaagatcgacaccagcagcaaagtgacccaggcg
ctggtgctggcgccgacccgcgagctggcgctccaagtggccgaggcgttcagccgctac
ggcgcccatttgccgcagatcaacgtgttaccgatctacggcggggcgtcctacgcggtg
cagctgtccgggttgaagcgcggtgcacaggtggtggtcggcacccccggccgagtcatc
gaccacatcggccgcggaagcttggatctgtcccgggtggactacctggtgctcgacgag
gcggacgagatgctcaacatgggcttcgccgaagacgtcgaacggatcctgtcggaaacg
ccggaatacaaacaggtcgcgctgttctccgcgactatgcccgcggcgatccgcaaactc
accgccaagtatctacacgacccgaccgaagtcagcgtcaagtcgaaaaccgctactgct
gagaatatttcgcagcgctacatccaggtcggcggcccacgcaagatggatgcgctcacc
cgcgtgctggaggtggagccgttcgaggcgatgatcgtattcgtccgcaccaagcaagct
accgaggaggtggccgaaaagcttcgcgcccgggggttttccgcggcggccatcaacggc
gacatcccgcagagccagcgcgagcggactatcgctgcgctgaagcaaggcggctcaaag
ggattagacatcctggttgccaccgatgtggctgcccgagggttggacgtcgagcggata
tcgcatgtgctcaactacgacatcccgcacgacaccgagtcgtacgtgcaccggattggg
cgcaccggcagggccgggcggtcgggcgccgcgctgctcttcgtctcgccgcgagagcgt
cacctgctcaaggcgatagagaaggcaactcggcaaaagctcaccgaggccgagttgccg
agcgtcgaagacgtcaacgcccagcgggtggcgaagttcgccgattcgatcaccgacagc
ctcggctcagcgggcatcgaattgttccgcagcctggtcgaggactacgagcgcgagcac
gacgtcccgatggccgatatcgcggcggcgctggcgctgcaatcgcgggacggcgaagcc
ttcttcatggcacctgagccgccacctgaccgccgtcgcgaacaacgcgaggaccggccc
gccaaatcatcgcgcaaagcgggcgaggatcccaggaaggagttcgccacctaccgtatt
gcggtggggaagcgccacaaggtcggcccgggcgcgatcgtcggcgccatcgcaaacgaa
ggtggcttgcaccgcagcgatttcgggcacatcaccgtcaagcccgacttctcactggtc
gagctgccggccagactgtcccgcgaaacactgaaagctcttgagcgcactcgtatttcc
ggcgtgctgatcaatctgcaacccgagcgcggccgagacagtccgaagcgtcgtgatcgc
ggcggagcagggcgggaacatgcccgatga
DBGET
integrated database retrieval system
