Mercenaria mercenaria (northern quahog): 123548663
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Entry
123548663 CDS
T07835
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123548663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123548663
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123548663
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123548663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
123548663
NCBI-ProteinID:
XP_053402224
LinkDB
All DBs
Position
6:complement(68641198..68684263)
Genome browser
AA seq
2450 aa
AA seq
DB search
MNLDSLSFALAEISYSVANLAKKNFRSSVAEINHLVSQHGAEADRHLFRCLFSHVDFSSD
GKSAGKDFHQTQFLIQECNSLLTKPNFVSTLCFAIDSPLHHQKTLKPSVHLFSQISKILR
LTRVQEVVFGLALLNSSNSEIRAHATQFVKQKLPDLLRSYVDADSAVRQEGGLQDIAIEV
LHLLLAHLVHSKEQFGIGVDQKEAFLKTLRKDFPRDRVPVVIGPLLYPETEDISVDKLTF
VTSMPKTHLDASLADMILESGFACTSTMEECRNMLIQFGQRDITPSVVAHVLGMMAKTPS
ALSDQPGQGSVAPGSGWGDMKDKMDQPGVNIWNVENFVQVVQDLAPHMSWRDVVGELDYP
QFVVANKRGLRLLMKGLIQGLQEIFPVEYIYRQWKNTEGQLSFIVQSLRNPDVFCFADYP
CHAVVIDILKTAPDDEKRDIAVWKSLDLVEVLLRLSEVGHYQQVSELFKFPVQNCPDMLV
LALLQITPTWNTLKQELISTLMPLFLGNHPNSAVVLHYAWHCQGHSSTIRTLIMHSMAEW
YMRGEPHDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWLSDKI
REHREPFIQTCVTFLKRRCPQLVGGFPKDDLQSKSQQLPPETIATMLTCLQVCASNVSQE
LSEIILTMIASASVLMKQRQAPVGPKPPNPTAPGPQVGPGPAGPVGGGLGAGSNSGLGLG
PNMGQTSLGSGLGNTPSTQLDQADTLGIPKSWGVPGQPSTGFAGLGGASNQTPGSPAKGF
PTPASSGFGGGIQNLTSQLQNLSMPTSSMAGLGAPRAPGVNTLGSLSAQQVMKQQGPQST
QQPMQPGIDRLRLAQPTELSSIFPDMNQQFTKEVEDEANSYFQRIYNQPPHPTMSIDEVL
EMLKRFKDSANRKEKEVYECMLRNLFEEYQFFPKYPDRELHTTAVLFGGIIEKGLATYMA
LGIALRYVLEALKKPHGSKMYYFGIAALDRFKTRLKDYPSYCQHLAAIPHFHQFPQHLME
FVEFGARNQEPPHIAQATTRSLTPVTASLNLLGGQSMFGISPNLTSTSGSSVMTGLDAFN
LTNLPTMSSMTSTPTTTVTVTTAVTSAPATTTTAATKTQPMPKPSIASATNIDTLLAGQS
KEEVVVPSESIQDRVFFIFNNLSMSNMNQKCEELKKEVKDEHMQWVSQYLVMKRASIEPN
FHTLYANFVDALSIKEITDMVILETFRNIKVLLRSDKGDANFSDRTLLKNLGHWLGMLTL
AKNKPILQIDIDVKSLVYEAYHKGARELLYVVPFSAKVLESCAKSKVFKPPNPWTMGIMN
VLAELHQEPELKLNLKFEIEVLCKTLNIDLNELKPCNYLKDTSKLSTYEPQLSINKQIIP
IPVAQPTGTPQPETVGVALTNVTPTVTTASITTTTTPGSTPSLPPQPQFAFDDINVTSLA
GLAPHIVINDQIAVFQANPQLKQYVRASLERAVQELLPPVVERSIKIALTTCEQIMKKDF
ALDPDENRMRAAAHHMVRSMTSGLALYTCREPLYIAISTNLKSAFMATLRGATQQQKDMI
EQAAQLIAQDNTELASAFIQKTAVERAIPEMDKRLATDFDARKAAREKGIRYCEPVVLTY
QAERMPEQIRLKVGGETPQQIAVYEEFARNIPGFLPLSEPALPAGVAKPMPSYGGTPEEI
MVIYEKIAREIEQHLQHLSNMPPSNPFIVGISSLMESIMMARSSRDIASAVALLQKAVEG
LLDHYTMTQDHELMIRFRECHLLVLKGIQDGRAFGPQWTNRQVTRCLIDSREDHRYNIEA
VDLLIRSGLVNMAQYDIFLVQLMENGLNMIAITFAMQLVQRYCVDDKINSHVTESDLVNT
IETLNLIAAKSREPPAGLENLLQNLRQSSGGDYSVLDRAPVAPNSMMQSGITQAREIDDP
PGLHEKTEYLLREWVNMYHSPAAGRDSTKAFSAFVQQMHQQGILKTDDLITRFFRLCTEM
CVDLCYRALSEQTHSPTLIRAKCFHTLDAFVRLIALLVKHSGDNANTVTKINLLNKVLGI
VAGVLLQDHEVRQTEFQQLPYHRIFIMLFIELNAPEHILENINFQVLTAFCNTFHILRPA
KAPGFAYAWLELISHRVFIGRMLALTPQQKGWGMYAQLLIDLFKFLSPFLRNAELNKPTH
FLYKGTLRVLLVLLHDFPEFLCDYHYAFCDVISPNCIQMRNLILSAFPRNMRLPDPFTPN
LKVDMLSDIQHPPRILSNFANMIQPPSFKKDLDSYLKTRSPVTFLSDLRSSLQSNEPGSR
YNIPLMNALVLYAGTQAIQHIHTKGLTPSMSTIAHSSHMDIFQNLAVDLDTEGRYLFLTA
IANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIEL
IKNPQFKFWNHEFVHCAPEIEKLFESVARSCMQPKTSATPSRDQEAAEIH
NT seq
7353 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggactcgttatcatttgctttagcagaaatcagttattcagtggcaaatctc
gcaaagaaaaacttcagatctagtgtagctgaaatcaaccatttggtgagtcaacacggg
gctgaggcagatagacatctgtttcgctgcttattttctcatgtcgacttcagtagtgat
ggtaaaagtgctgggaaagatttccatcagacccagtttttgatacaggagtgtaattca
cttttgacaaagccaaactttgtttcaacattgtgttttgcaatagatagtcctttacac
catcagaagactttaaagccatcagtgcacctgttctcacagatcagtaagatacttcgt
ctgacccgtgtccaagaagttgtgtttggtctcgcacttctcaactcgtccaacagtgaa
ataagagctcacgctacacagtttgtgaaacagaaattaccagatttactccgctcatac
gtagatgccgattcggctgtaagacaagaaggtgggcttcaggatattgctattgaagtt
ttacatcttctgcttgctcaccttgtacactcgaaggaacagttcggcattggtgtagat
caaaaagaagctttcctcaagacactcagaaaagacttccctcgtgatcgtgtaccagtt
gttataggaccattactttatcctgaaacagaagatatatcagtggataaactaacgttc
gtcaccagtatgccgaaaacacatcttgatgcctcattagcagacatgattctggagtca
ggctttgcctgtacctccactatggaagaatgcaggaatatgttgatacagtttggtcag
cgggacattactccaagtgtggtcgctcatgtgcttggcatgatggcaaaaacaccttca
gcattgtctgaccaaccaggacaggggagtgtagctccagggagtggttggggtgatatg
aaagacaagatggaccagcctggtgtgaacatatggaatgtggagaactttgtacaagtt
gttcaggatttggcaccacacatgagctggcgggatgttgtaggagagcttgactatcca
cagtttgtggtggctaacaagaggggtttgcgtctgttgatgaaggggctcattcagggg
ctgcaggaaatatttccagtggaatatatatacaggcagtggaaaaatacggaaggccag
ttatctttcattgtgcaatcattgcgtaatcccgatgtgttctgttttgctgactatccc
tgtcacgctgtagtcattgatatactgaaaactgcaccagatgatgagaagcgagatata
gctgtttggaaatccttagacttggttgaagtgctactacggttgtcagaggttggccac
taccagcaggtgtcagagttgttcaagtttcctgtacagaactgtccagacatgttggtc
ctcgcattacttcaaataacaccaacatggaacaccctgaagcaggagttgatatcaacc
ttgatgccactgtttcttggcaatcatccaaattctgcagtggttctacactacgcctgg
cattgtcaaggtcactcaagcacaatacgtaccctgatcatgcactccatggctgagtgg
tacatgcgcggagagccacatgatcagacccgtctgtctcggattctagatgttgcacaa
gacttaaaagctttgtcaatgctgttgaatgcaacaccatttgcatttgtgatagatcta
gcatgtttggcttccaggagggaatatctcaaacttgacaagtggctcagtgataagatc
agagagcatagggagccattcatacagacatgcgtaacattcctgaaaagacgatgtccc
cagctggttggtggatttcccaaggacgaccttcagtcgaagagtcaacagttaccacct
gaaaccatagcaaccatgcttacttgtcttcaagtctgtgctagcaatgtgagtcaagag
ctatcagaaattatcctgactatgatagccagtgcaagtgttctgatgaagcagaggcaa
gcccctgtgggtcccaaacctcccaaccccactgcaccaggaccacaggtaggccctggc
ccagcaggacctgtgggtggaggtcttggtgctggtagtaattctggattgggtcttgga
cccaacatgggtcagacaagcttgggatctggattgggaaatactccatctacacagttg
gatcaagcagacactctggggattccaaagtcatggggtgttccaggacagcctagtact
ggctttgctggtcttggtggagcgtcaaaccaaactcctggatcacctgctaaaggcttt
cctacaccagccagttcaggctttggcggtggaatacagaacttgacatcacaactgcag
aatctgtcaatgcctacttcatctatggctggtttgggtgcccctcgagcaccaggtgta
aacaccctagggagcctaagtgcccagcaggtcatgaagcagcagggtccacagtccaca
cagcaaccaatgcaacctggcattgatagactgaggcttgcccagccaacagagttatct
agtatattcccggatatgaatcagcagtttacgaaggaggttgaggatgaggccaactcc
tactttcagaggatctataatcaaccccctcaccccacaatgtctatagatgaggtctta
gaaatgctgaaaaggtttaaggactctgcaaatagaaaagaaaaggaggtttatgagtgt
atgctacgtaatctgtttgaagagtatcagttctttcccaaatatcctgacagagaatta
cacacaacagctgtgctatttggtggaattattgaaaaaggactagctacctatatggca
ctgggtattgccctgcgctatgtgttggaagccctgaagaagccccatggcagtaaaatg
tactactttggtatagcagccctggacagatttaaaacccgattgaaggactacccttct
tactgtcagcacctggcagctatacctcatttccatcagtttccacaacatcttatggag
tttgttgagtttggagcacgtaatcaggagccgccacatatagcccaggccacaacacgc
agtctgaccccagtaacagccagcctcaatctgcttggtggtcagtcaatgtttggtatc
agtccaaacctgacatccacctctggtagctcggtgatgacaggcctcgatgctttcaac
ctgacaaacctaccgaccatgtcaagtatgacgtcaacgcctaccactacagttaccgtg
acaacggctgtgacatcagcaccagctacaacaaccacagctgccaccaaaacacaacct
atgccaaagccatcaatagcaagtgctacaaatatagatacactgttggctggtcagagt
aaggaggaagtggttgtaccatcagaatctatacaagacagagtgttctttatcttcaac
aatctctccatgtcaaatatgaaccagaagtgtgaggagttgaagaaagaagtgaaggat
gaacacatgcagtgggtatcacaatatctggttatgaaacgagcaagtattgagcccaac
ttccacacactgtatgccaactttgtggatgctctcagtataaaagaaatcactgacatg
gttatattagaaacattcagaaatataaaggtattgttaagaagcgacaaaggagatgct
aacttctctgacaggacgttactcaagaacctcggacactggctcgggatgcttacatta
gccaagaacaaacctatcctacagattgacatagatgtgaagtctttagtatatgaggca
tatcataaaggagccagggagctgctatatgtggtaccattctcagcaaaagttctggag
tcatgtgctaaaagcaaggttttcaagccacccaatccatggacaatggggataatgaat
gttttggcagagttacatcaggaaccagaactgaaactgaatctcaagtttgagattgaa
gttctgtgtaaaactcttaacatagatctaaatgaattgaagccatgcaattacctgaaa
gatacatcaaagcttagtacatacgagccacagctgtcgattaacaaacagatcatacct
ataccagtagcacagccaacaggcactcctcaaccagagacagtaggcgtggccttgacg
aacgtcacacccactgtgacaacagcaagtataactacaacaacaacaccaggatctaca
ccaagtctgccgccacagccacagtttgcctttgatgatattaatgtgacatctctggct
ggtctcgcaccacacatagtcattaatgatcagattgcggtattccaagccaatcctcag
ctgaagcagtacgtacgagcctcactggagagagctgtacaagagttacttccgcctgtt
gtggaaaggtctataaagatagctctgacaacatgtgaacaaatcatgaagaaggatttt
gcactggatccagatgaaaacaggatgagggctgctgcacatcatatggtacgcagtatg
acatcaggattggcgctgtacacatgccgggaaccattgtatatcgctatctcaaccaac
ctgaaaagtgcattcatggcaacattaagaggtgccacccagcaacagaaggatatgata
gagcaagcagcacagcttatagctcaagacaacacagagctcgcctcagcttttatacag
aaaacagccgtggagagagctataccagagatggacaaaagacttgctactgactttgat
gcgaggaaagcagcaagggagaagggtatcagatactgtgagcctgttgtattaacctac
caagcagaaagaatgcctgaacagatccggctcaaagttggcggggagacaccacaacag
attgcagtatatgaagagtttgccaggaacataccaggattcctaccactgtctgaacct
gcactgcctgctggagtggcaaaacccatgccatcctatggtggaacacctgaagaaatc
atggttatctatgagaagatagctcgtgagatagaacagcatctccagcacctgagcaac
atgcctcccagtaacccatttattgtaggtatcagtagtttgatggaatcaatcatgatg
gccagaagttccagagatattgcatctgctgtagctttacttcaaaaggctgtagagggt
ttgttagatcattacacaatgacacaggatcatgaactgatgatcaggttccgagaatgt
catctactggtcctcaaaggtatacaagatggtcgagcgtttggtccacagtggacaaat
agacaagtcaccagatgcttgatagattctcgtgaagatcacagatataatatagaagcg
gtagatttgttgatccgcagcggtctcgtaaacatggcacagtatgatatatttctagtg
cagttgatggagaatggtctaaatatgattgcaattacattcgccatgcagctggtacag
agatattgtgtagatgataagataaacagtcatgttacagagtctgacttggttaataca
atagagaccctcaatctgattgcagcaaagtcaagggaacctccagcaggccttgagaac
cttctacagaacttgcgacagagttctggaggtgactatagcgtgctagaccgagctcca
gtagctcccaattccatgatgcagtctgggataacccaggcacgagagatagacgatcca
ccaggactacacgagaaaacagaataccttctgagggaatgggtcaacatgtaccattca
ccagctgctggtagagacagtaccaaggctttctcagcatttgtgcagcagatgcaccag
caaggtatactgaagacggatgatcttatcacgagatttttccgactgtgtacagagatg
tgtgtagatctgtgttacagagccttgagtgaacaaacacatagccccactctgatacga
gctaaatgcttccacacccttgatgcttttgttaggttgatagctctacttgtaaaacat
tcgggggataatgcaaatacggtcacaaagataaacttacttaacaaggtgcttggtata
gtagctggtgtgctgctacaggatcatgaagtacgccagactgagttccaacaactaccc
tatcaccgtatcttcatcatgctatttatagaattgaacgcaccagaacatatcctagag
aacattaacttccaagtgctaactgccttttgcaatacattccacatattgcgtcctgca
aaggcacctggatttgcttacgcctggttagagttgatctcacatcgggtatttattggt
agaatgttggccctcacaccacaacaaaagggttggggaatgtatgcccagttgttgata
gatctgtttaaatttctatcacccttcctgagaaatgcggaactaaataaacccacccat
ttcttgtacaagggaactttacgagtgttgctagtcctgctccatgatttcccagagttc
ctctgtgactaccattatgccttctgtgatgtcatctcaccaaactgtatacagatgcga
aatctcattctcagtgcattcccgcgtaacatgcgcttgcctgatccattcacaccaaac
ctgaaggttgatatgctgtcagatatacaacatcctccaagaatattatccaacttcgca
aacatgatacaaccaccatcattcaaaaaggatttggattcttatctgaaaacaagatct
cctgtgacattcttatcagatctgagaagcagtctacagtcgaatgagccaggttccaga
tacaacatcccgttgatgaatgccctggtactgtatgcgggaacacaggccattcagcat
atacacacaaagggcctcacacctagcatgagtacaatagctcattcttcacacatggac
atcttccagaacctcgcagtcgatcttgatacagaaggtcgttatttgttcctgacggcg
atagcaaaccagctgagataccctaacagtcacacacactacttcagctgtacactctta
tacctgtttgctgaggccaatactgaggcaatacaggagcagatcaccagggtattactg
gagaggttaattgtgaatagaccacacccatggggactgttgataaccttcatagaactc
atcaagaatccacagttcaagttctggaatcatgagtttgttcactgtgcaccagagatc
gagaaattgtttgaatctgtggctcggtcatgtatgcagccaaagacgagtgctacacct
tcccgggatcaggaagctgcagaaatacattag
DBGET
integrated database retrieval system
