Methylobacterium mesophilicum: MMSR116_25650
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Entry
MMSR116_25650 CDS
T06344
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mmes
Methylobacterium mesophilicum
Pathway
mmes03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmes00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMSR116_25650 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmes03021
]
MMSR116_25650 (rpoB)
03400 DNA repair and recombination proteins [BR:
mmes03400
]
MMSR116_25650 (rpoB)
Enzymes [BR:
mmes01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMSR116_25650 (rpoB)
Transcription machinery [BR:
mmes03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMSR116_25650 (rpoB)
DNA repair and recombination proteins [BR:
mmes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMSR116_25650 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RelB
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QGY04904
UniProt:
A0A6B9FVJ5
LinkDB
All DBs
Position
5350060..5354184
Genome browser
AA seq
1374 aa
AA seq
DB search
MANTLVGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLMVDEPEGGRADEGLQSVFKSV
FPISDFASTALLEFVRYTFEAPKYDVDECRQRGITFAAPLKVTLRLIVFDVDPDTQAKSV
KDIKEQDVYMGDMPLMTENGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAA
RIIPYRGSWLDVEFDAKDIVHVRIDRKRKLPATSLLYALGLDGEEILSTFYNKVVYDRDG
ADWRVPFDAERMKGMKATVDLIDADSGEVVLEAGKKLNARNARQITEKGTKFLKATDEDL
VGQYIAEDLVNTQTGEIWAEAGEEITEKLLKSLEDVGTAELPVLDIDHVNVGPYIRNTLA
VDKNSGREGALFDIYRVMRPGEPPTLDTAEAMFHSLFFDSERYDLSAVGRVKMNMRLDLD
AADTVRTLRKEDMLAVVKALVELRDGKGEVDDIDHLGNRRVRSVGELMENQYRLGLLRME
RAIRERMSQVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIETPFR
RVRDGVVTDEVAYLSAMEEAKYYVAQANAQMDEARKLTEDLVVCRRAGEVIVVGPERVDL
MDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRADAPFVGTGMEAVVARDS
GAAIAARRAGIIDQVDATRIVIRATEEADANKPGVDIYRLQKFQRSNQSTCITQKPLVRV
GEFVKKGEIIADGPSTEFGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIHI
EEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVNAGDILVGKITPKGES
PMTPEEKLLRAIFGEKASDVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDERAQAIEREEI
ERLAKDRDDEQAILDRNTYARLADVLIGQAPVAGPKGFKKDTTLTRELINDYPRSQWWQF
AVIDDRLMTEMEAMQKQYDESKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKI
QPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWA
AAGLGRKVSKAVDAYLKSQDIAPLREEMKAIYSPGELDGLTDEELAEAGNNVRRGVPMAT
PVFNGAKEADIEQMLEMAGLDRSAQSTLYDGRTGEPFDRKVTMGYIYMLKLHHLVDDKIH
ARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKV
YEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVELTSSKKAANDQLEPPADAAE
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggccaacacgctggtcggtcgcaagcgcattcggaagttcttcggcaagatcaaggaa
gttgccgagatgccgaacctcatcgaggttcagaaggcgtcctacgaccagttcctgatg
gtcgacgagcccgagggcgggcgcgccgacgaggggctgcagagcgtgttcaagtcggtg
ttcccgatctccgacttcgcctccacggcgctgctcgagttcgtacgctacaccttcgag
gccccgaagtacgacgtcgacgagtgccgccagcgcggcatcaccttcgcggccccgctg
aaggtcaccctgcgcctcatcgtgttcgacgtcgatcccgacacccaggccaagtcggtc
aaggacatcaaggagcaggacgtctacatgggcgacatgcccctgatgacggagaacggc
accttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgctcgccgggc
gtgttcttcgaccacgacaagggcaagacccattcgtcgggcaagctcctgttcgccgcc
cgcatcatcccgtaccggggctcctggctcgacgtcgagttcgacgccaaggacatcgtg
cacgtccgcatcgaccggaagcgcaagctgccggcgacgtcgctgctctatgccctgggg
ctcgacggtgaggaaatcctgtcgaccttctacaacaaggtcgtctacgaccgcgacggt
gccgactggcgcgtgcccttcgacgccgagcgcatgaagggcatgaaggccacggtcgac
ctaatcgacgccgattccggcgaggtcgtcttggaggccggcaagaagctcaacgcccgc
aacgcccgccagatcaccgagaagggcaccaagttcctcaaggcgaccgacgaggatctc
gtcggccagtacatcgccgaggatctggtcaacacccagaccggcgagatctgggccgag
gccggcgaggagatcaccgagaagctcctgaagagcctggaggatgtcggcaccgccgag
ctgccggtgctcgacatcgaccacgtcaatgtcggtccctacatccgcaacacgctggcg
gtggacaagaattccggccgcgaaggcgcgctgttcgacatctaccgggtcatgcgcccg
ggcgagccgccgaccctcgacaccgccgaggcgatgttccactcgctgttcttcgattcc
gagcgctacgacctctcggcggtcggccgcgtgaagatgaacatgcggctcgacctcgac
gccgccgacacggtccgcacgctccgcaaggaggacatgctggcggtggtcaaggcgctg
gtcgagctgcgcgacggcaagggcgaggtcgacgacatcgaccacctcggcaaccgccgc
gtccgctcggtgggcgagctcatggagaaccagtaccgcctgggcctcctgcgcatggag
cgcgccatccgcgagcgcatgagccaggtcgatatcgacacggtcatgccgcaggacctg
atcaacgcgaagccggcggccgcggccgtgcgcgagttcttcggctcgtcgcagctgtcg
cagttcatggaccagaccaacccgctctccgaggtgacgcacaagcgccgcctctcggcg
cttggcccgggcggtctgacgcgcgaacgcgccggcttcgaggtgcgcgacgtgcacccg
acccactacggccgcatctgcccgatcgagacgccggaaggcccgaacatcggcctgatc
aactcgctcgccaccttcgcgcgggtgaacaagtacggcttcatcgagaccccgttccgc
cgcgtgcgcgacggcgtggtcaccgacgaggtcgcctacctctccgccatggaggaggcg
aagtactacgtcgcccaggcgaacgcacagatggacgaggcccgcaagctcacggaggac
ctcgtggtctgccgccgggccggcgaggtgatcgtcgtgggtcctgagcgcgtcgacctt
atggacgtgtcgccgaagcagctcgtctcggtggccgcggcgctgatcccgttcctggag
aacgacgacgccaaccgcgcgctcatgggctcgaacatgcagcgccaggcggtgccgctg
gtccgcgccgacgccccgttcgtgggcaccggcatggaggcggtggtcgcccgggattcc
ggcgccgccatcgcggcccgccgcgccggcatcatcgaccaggtggacgccacccgtatc
gtcatccgcgccacggaagaggccgacgccaacaagccgggcgtcgacatctaccggctg
cagaagttccagcgctccaaccagtcgacctgcatcacgcagaagcctctggtccgcgtc
ggcgagttcgtgaagaagggcgagatcatcgccgacggaccctcgaccgagttcggcgag
ctggcgctgggccggaacgtgctcgtcgcgttcatgccgtggaacggctacaacttcgag
gactcgattctgctctccgagcggatcgtgaaggatgacgtgttcacctcgatccacatc
gaggagttcgaggtgatggcccgcgacaccaagctcgggcctgaggagatcacccgcgac
atcccgaacgtttcggaagaagcgctcaagaacctcgacgaggccggcatcgtctatatc
ggcgccgaggtgaacgcgggcgacatcctcgtcggcaagatcaccccgaagggcgagagc
ccgatgacgccggaggagaagctgctccgcgccatcttcggcgagaaggcctcggacgtg
cgcgacacctcgctgcgggtgccgccgggcgtcaccggcaccatcgtggaagtccgcgtg
ttcaaccgccacggcgtcgacaaggacgagcgcgcccaggcgatcgagcgcgaggagatc
gagcggctcgccaaggaccgcgacgacgagcaggcgatcctcgaccgcaacacctacgcc
cgcctcgcggacgtgctgatcggtcaggcgccggtggccggcccgaagggcttcaagaag
gacaccacgctcacccgcgagctgatcaacgactacccgcgctcgcaatggtggcagttc
gccgtcatcgacgaccgtctcatgaccgagatggaggcgatgcagaagcagtacgacgag
tcgaagaagcgcctcgagcagcgcttcctcgacaaggtcgagaagctgcagcgcggcgac
gagctgccccccggcgtcatgaagatggtcaaggtcttcgtggcggtgaagcgcaagatc
cagccgggcgacaagatggccggccgtcacggcaacaagggtgtcgtgtcgcggatcgtg
ccgatcgaggacatgccgttcctggaggacgggacgcatgccgacatcgtgctcaacccg
ctgggcgtgccctcgcgcatgaatgtcggccagatcctggagacgcacctgggctgggcg
gctgcgggcctgggtcgcaaggtgtcgaaggcggtggatgcctatctgaagtcgcaggac
atcgcgccgctgcgggaggagatgaaggcgatctactcccccggcgagctcgacggcctg
acggacgaggagctggccgaggccggcaacaacgtccgccgcggcgtgccgatggccact
ccggtgttcaacggcgccaaggaggccgacatcgagcagatgctggagatggccggtctc
gaccgctcggcgcagtcgacgctctatgacgggcgcaccggcgagcccttcgaccgcaag
gtgacgatgggctacatctacatgctgaagctgcaccacctcgtggacgacaagatccac
gcccggtcgatcggcccgtactcgctcgtcacccagcagccgctgggcggcaaggcgcag
ttcggcggtcagcgcttcggcgagatggaggtctgggcgctggaggcctacggcgcggcc
tacacgctgcaggagatgctcacggtgaagtcggacgacgtggccggccgcaccaaggtc
tacgaggcgatcgtccgcggcgacgacaccttcgaggccggcatccccgagtcgttcaac
gtgctcgtcaaggagatgcgctccctcggcctcaacgtcgagctgacgtcctccaagaag
gccgccaacgaccagcttgagcccccggccgacgcggccgagtaa
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integrated database retrieval system
