Marmota marmota marmota (Alpine marmot): 107143407
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Entry
107143407 CDS
T09644
Symbol
Col6a5
Name
(RefSeq) collagen alpha-5(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
mmma
Marmota marmota marmota (Alpine marmot)
Pathway
mmma04151
PI3K-Akt signaling pathway
mmma04510
Focal adhesion
mmma04512
ECM-receptor interaction
mmma04518
Integrin signaling
mmma04820
Cytoskeleton in muscle cells
mmma04974
Protein digestion and absorption
mmma05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mmma00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
107143407 (Col6a5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107143407 (Col6a5)
04518 Integrin signaling
107143407 (Col6a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107143407 (Col6a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
107143407 (Col6a5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
107143407 (Col6a5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
107143407 (Col6a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mmma04147
]
107143407 (Col6a5)
00536 Glycosaminoglycan binding proteins [BR:
mmma00536
]
107143407 (Col6a5)
Exosome [BR:
mmma04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107143407 (Col6a5)
Glycosaminoglycan binding proteins [BR:
mmma00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107143407 (Col6a5)
Hyaluronan
Extracellular matrix or blood plasma proteins
107143407 (Col6a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA_SIBA-E
VWA_CoxE
Copine
Motif
Other DBs
NCBI-GeneID:
107143407
NCBI-ProteinID:
XP_015342560
Ensembl:
ENSMMMG00000000877
LinkDB
All DBs
Position
Unknown
AA seq
2613 aa
AA seq
DB search
MKIQLIIVALIILWTEILADQSPGPGPEYADVVFLVDSSDHLGVKAFPFVRTFINKMINS
LPIEANKYRLALAQYSDILHNEFNLNTFRSRNPMLNHLKKNFGFLGGSLRIGNALREAHR
IYFSAPSDGRDRKLFPPILVVLASAESEDDVEEASKALRKDGVKIISVGMQKASEENLKA
MATSQFHFKLRTVRDLSIFSSNMTQIIKDATKYREGAVDVDVQVPFLTSCQKDSLADLVF
LVDGSLGTQQNLRNLQKFLENITSSLDVNSDCMRLGLMSYSTRAETISFLKSSTTQFEFQ
QQIRKLSLRDGKSNAGAAINQLRKEGFSQSSGSRRAQGVPQIAVLVTHRSSDDEVHEAAL
NLRLEGVTVFAMNIKGANSTQLEAIASYPTEETVSTLNSYAALESYSNNFLKKLHNEIWT
QISTHAEQINLDKTGCVDTKEADIYFLIDGSGSIQVNQFEQIKTFMSSVIDMFSIGPNKV
RVGVVQYAGENREEFPISHYQNNIDLKKAVFNIYQLGGGTRTGKALDFIRPIIKEGKKDR
ASEVPCFLIVLTDGKSEDSVVQPAERLRAEQVIIHAIGIGEANKTQLQQIAGVKERVNFG
QNFDALKSIKNQVVRRICTEKGCEDMKADVMFLVDSSGSIGATNFDTMKNFMKNLLAKIQ
IGADKTQIGVVQFSGHNQEEFPLNKYFTQKEISAAIDRMSLIGENTLTGNALTFVDQYFT
LPKGARPHVRKFLILITDGEAQDDVRGPAIALRDTGVIIFSVGVFGANRTQLEEISGDGS
LVFHVENFDHLKAIESKLIFRVCALHDCKRIELLDVVFVLDHSGSISPQQRESMINLTVH
LVKKADVGRDRVQFGALRYSDSPEILFFLNTYSSSSAIIENLRRRRDTFGSTYTAQALEH
SNILFKEEHGSRIKQNVRQMLIIITDGVSHDRDKLSEAALKLRNKGVTIFAVGVGQANQN
ELETMAGNKNNTIHVDDFDKLKDIYLPVQENVCGEAGEVCKLQEADVIFLCDGSNMVSEA
EFVTMTTFLSDLIDNFDTQSQRMKVGMAQYGSRYQEIIELGNTLTKAQWKSRIQAVSKSN
GQSRIDFALQHVSSMFHPSFGGRRNAGVPQTLVVITSGSPRYNVVDAVKTLKDLGICILV
LGIGDVRKEQLLPITGNSEKIITFRDFDRLKNVDVKKRMVREICQSCGKTNCFVDIVVGF
DISTHLQGQTLFQSHPRLESYLPNIIEDITSIRGVSCGAGAEAQVSLAFKVNSDQESPAE
FQIYQKAIFDSLRQVTVRGPTHLNAQFLQSLWDTFRDKSASRGQVLLIFSDGLQGESTMM
LENESDRLREAGLDGLLVVSLNATAHDEFSSFEFGKGFDYRTHLTIGMMELGSMLSQYLG
NIAERACCCEFCKCPGVPGPHGSRGLQGFKGFSGLKGSRGHRGEDGDPGRRGDTGPRGDR
GIAGCPGIRGQKGAKGFSGYKGEHGEDGIDGLDGEEGFHGLPGGKGEKGDPGSQGSPGSR
GPPGGDGEKGFPGDPGNPGRNSNIKGRKGSKGEQGRQGTTGQKGAQGSPSSRGSRGLEGR
RGSPGAPGEPGNPGPQGIQGADGLQGSQGSSGNPGRKGEKGSQGHKGPQGSSGLVGSKGS
IGRPGLMGRKGERGELGVPGPVGPAGQRGKQGDYGVPGYGNEGQKGVKGPRGFPGDIGQK
GIVGDPGIPGDPGPKGFRGLSFTVGQKGERGLPGSRGLSGRRGPKGVAGQPVYSQCDLIK
FMRDHSPCWKEKCPAYPTELVFALDQSSGVTEQRFNEIKGIITSIVNDLHIRENNCPVGA
KIVVVSYDSDTNYLIRSSDYRTKKLLLRLLSQIKYQVPTEARDIGNAMRFVARHVFKRTY
PGANVRRVAVFFSNGQAVSRSSILTATMEFSALDISPAVFAFNERVFLDEAFGFDNTGTF
QVIPVPPDGDYEPLERLRLCTLCYDKCFPNTCAEEILLSGNSYMDVAFLLDNSQHIANDD
FKAVKTLLSSAIDNFDIASNPSVSDSGDRIALLSYSPWDGSRRKMGTIKVEFEFTTYDNQ
FLIKSHIQTSLQQLNGEATLGHTLQWATENLFPGTPNSRKHKVIFVISAGENRERKEYVK
KMALRAKCQGYVIFVISLGPAHKDNIEELASYPLDHHLIQLGRMHKPDLNYVVKFLKPFV
YSVRRGFNQYPPPLLEDACRLIRLEGDGQNSGFQFTAELHKVSSDKNSLMGQELSAGRDS
SFVLEDGGGDHLVYIPSKILEPQKLVVNYEKDQASAEPTSFTSGLENHGRKEELGLTSAP
GDASLQEYYMDVAFLIDTSQRVGNNEFKELKAFIASVLDYFHIAPDPLTSTLGDRVAVLS
YSPPGYLPNTEECPVYLEFDLLTYNSRDQMKHHLQDSFHQLNGDVFIGHALQWTIDNVFV
GTPNLRKNKVIFVISAGETNPLDKEVLRSVSLRAKCQGYSIFVFSFGPGHNDKELEELAS
RPLDHHLVQLGRIHEPDLDYIIKFIKPFVHLIRRAINKYPTKDLRAKCVNITYPSPRDTG
MEDTVLLIPEVYEIETKNSELFGEFGSQEQHFLVLGNNHSNDSGTTSDVIQKLYMLFSPG
ELMVNDKEEAHSEEITASVNDKQQGEKDGEDTK
NT seq
7842 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcagctaatcatagttgccctaataatcctttggactgaaatattggcagat
cagagcccagggccaggccctgagtatgcagatgtggtgtttctggtggacagctctgat
cacctgggagttaaggccttcccatttgtgagaacattcatcaataaaatgatcaacagt
ctccccatcgaggccaacaagtaccgcctggccctggcccagtacagtgacatactccac
aatgaattcaacctgaataccttcaggagcaggaaccccatgctgaaccatctcaagaag
aactttgggttccttggtggatccctgaggataggaaacgctcttcgagaagctcacagg
atctacttctctgcaccttctgatggaagagacaggaaactgtttcctcctattttggtg
gtcctggcttcagcagaatctgaggatgatgtggaagaggcttcgaaggccctgcggaaa
gatggggtgaaaatcatctccgtggggatgcagaaggcttccgaggaaaacctgaaggcc
atggccacatctcagtttcacttcaaacttcggacggtcagagacctcagcatcttctcc
tcaaacatgacgcagatcatcaaggatgcgaccaagtacagagaaggagcagtcgatgtt
gatgtacaagttcccttccttacatcctgtcagaaagattcacttgccgaccttgtgttc
ctggtggacgggtcacttgggacccaacaaaatttaagaaacctgcagaagttcctggag
aacataaccagctccttagatgtgaattctgattgcatgcggcttggactgatgagctac
agcacaagggctgagacgatttcttttctgaaatccagcacaacccaatttgaatttcag
cagcaaatcaggaagctttcccttcgggatgggaaatccaatgctggggctgccatcaat
cagttgaggaaggaaggtttctcacagtccagtggcagcagaagggcacagggggtccct
cagattgcagtcctggtcacccacagatcatcagatgacgaggtgcatgaggctgcattg
aaccttcggctggaaggtgtaactgtgtttgctatgaacatcaaaggggcgaacagtact
cagttagaagcaatagcatcttaccctacagaagagacagtttccaccttgaactcctat
gcagcgttggaatcttacagtaataacttcctgaaaaagctccacaatgaaatatggacc
caaatttctactcatgctgaacaaattaaccttgacaaaactggctgtgtggatacaaag
gaggctgatatctatttcctcattgatggctccggcagcatccaggtgaatcagtttgag
caaatcaagacattcatgtcgtcagtgatagacatgtttagcattggcccaaacaaagtc
cgagttggagtcgtgcaatatgcaggggagaacagggaggaatttcccatctctcactat
cagaacaacattgacttaaaaaaggccgtttttaacatctatcagcttggaggtggcact
cggactggaaaagctctggatttcatacggccaataataaaggagggaaagaaggacagg
gcaagtgaagtgccctgtttccttatcgtgctgactgatgggaaatccgaggacagtgtt
gtgcaacctgctgagagactaagggctgaacaggttatcattcatgcaattggcattgga
gaggctaataaaacacagctgcagcaaattgctggggtaaaagaaagggtcaactttgga
cagaactttgatgccttaaaaagcataaaaaatcaagttgttcgccgcatctgcactgaa
aagggatgtgaagacatgaaggctgatgtcatgtttctggtggatagttctggaagtata
ggagccacaaattttgatacaatgaaaaacttcatgaaaaacctgttggctaagattcaa
attggtgcagacaaaacccaaattggtgtcgttcagttcagtggtcataatcaggaagag
ttcccactgaataagtactttacacaaaaagaaatctctgccgctatagacagaatgtct
ctcatcggtgaaaacactctgactggaaatgcactgacctttgtagatcaatacttcacc
ctccccaagggggcccgccctcatgtcaggaagtttctcatcctcatcacagatggagaa
gcacaggatgatgtgagaggtcctgcgattgctctccgggacacaggggtgatcattttc
tccgtgggggtatttggtgccaacaggactcaactggaggagatcagtggggacggcagc
ctcgttttccacgtggagaacttcgatcatctaaaggcaatagaaagtaaactcatcttc
cgtgtgtgcgctctgcatgattgtaaaaggattgaactgttagatgttgtgtttgtgctg
gatcattcaggtagcatcagtccccagcagcgggaaagcatgattaacctcaccgtccat
ttggtgaagaaagcagatgttggcagggacagagttcagtttggagccctcagatactct
gacagtcctgagattcttttcttccttaacacatactcaagcagttcagcaatcatcgag
aacctgaggaggcgccgggacactttcgggagtacctacacagcccaggctctggagcac
tccaacatcctctttaaggaagaacatggcagccgcatcaagcaaaacgtgagacagatg
ctgattatcatcactgatggggtgtcccacgatcgggataagctcagtgaggccgcgctg
aaattaagaaacaaaggcgtcaccatctttgcggtgggtgtgggacaggccaaccaaaat
gaacttgagactatggcagggaataaaaataataccatccatgtggatgattttgacaaa
ctgaaagatatttatctgcctgtacaagaaaatgtgtgcggtgaagcaggagaggtctgt
aaacttcaggaagccgatgtgatcttcctctgtgatggctctaacatggtgtctgaagcg
gagtttgttaccatgacaactttcttgtcagacttaattgacaattttgatactcagtct
caaagaatgaaagttgggatggctcaatatgggagccgctatcaggaaataattgagttg
ggaaacactctgaccaaagcccagtggaaatcgcgaattcaggctgtctccaagagcaac
gggcagtctcgaattgactttgcccttcaacacgtgagctcaatgtttcatccatctttt
ggtgggagaagaaatgctggtgtccctcagactttagttgttatcacatctgggtctccc
cgctacaatgtggtagatgcagtaaaaaccctgaaagaccttggaatctgcatcctggtt
ttgggcataggagatgttcggaaggaacagcttctgccaataacgggcaattctgagaag
ataatcacgtttcgagacttcgatagattaaagaatgtggatgtgaaaaaaagaatggtc
cgagaaatctgccagagctgcgggaaaaccaactgctttgtggacatagtggtcgggttc
gacatttccactcacttgcaggggcagactttgttccagagccacccccggttggaatca
tacctcccaaacatcatagaggacatcacctccatcaggggggtgagctgtggggcaggt
gcagaggcgcaggtgagcctggcttttaaggtgaacagtgaccaagaatcccctgctgaa
ttccaaatctaccagaaagcaatatttgacagcttacgccaagtcaccgtcagggggcca
actcatctgaatgcacagttcttacagtcgctgtgggatacgtttcgggataaatctgca
tcccggggtcaggtgttgctcatcttttcggatggtctccagggagagagcacaatgatg
cttgaaaacgaatcggacaggctcagagaagcaggacttgatggtctgctggtggtgtcc
cttaatgcaactgctcatgatgagttttccagctttgaatttggaaaaggatttgattat
aggactcacttgaccattggaatgatggaactgggcagcatgctctcacagtacctggga
aacattgcagagagggcttgctgctgtgaattttgcaaatgtccaggggttccgggacct
catgggagcagaggactacaaggctttaaggggttttcaggtctaaaaggcagcagagga
cacaggggagaagatggagaccctggaagacgaggagacactggaccccgaggagacaga
ggaattgcaggatgtccggggatacggggtcaaaagggagccaaaggattttctggatat
aagggagaacatggagaagatgggattgatgggcttgatggggaagagggctttcatggg
cttcctggaggaaaaggagaaaagggtgatccaggatctcagggcagtccaggttccaga
ggtccccctgggggagatggagagaagggcttcccaggggatcctggtaatccaggccga
aacagtaacatcaaaggaagaaagggctccaaaggagaacaaggaagacaaggtacaact
gggcagaagggggcacaaggaagtcctagttccagaggaagccggggactggaaggccga
aggggatccccaggtgctccgggagaaccaggaaatcctggacctcaaggtattcaggga
gctgatggattacaaggttcacaggggtcaagtggaaatccaggcaggaaaggagaaaaa
ggaagccaggggcacaaaggacctcagggttcttctgggctagtgggatctaaagggagc
attggacgacctggacttatggggagaaagggagaacgtggagaacttggcgttccaggg
ccagtggggccagctggacagcggggaaaacagggagattatggcgtcccaggttatggt
aatgagggacaaaaaggagtaaagggtccaagaggattccctggagatatagggcagaag
ggtattgttggtgatcctggaattcctggggaccctggacccaaagggtttaggggacta
tcattcactgtaggccagaaaggggaacgtggacttccaggatcccgaggcctgtcagga
cggagaggtcctaaaggtgtggcagggcagcctgtatattctcaatgtgatctgatcaag
ttcatgcgggaccacagtccttgttggaaagaaaagtgtccagcctatcccacagagctg
gtgtttgccctggaccaatcctctggtgtcactgaacaaaggtttaatgaaataaagggc
atcatcacttccattgtcaacgaccttcatatcagggaaaataattgtcctgtgggagca
aagattgttgtggtttcctacgactcagacaccaactatctcatccgttcgtctgactac
cgcaccaagaagctgctcctccggcttctttcccaaataaaataccaagtccctacagag
gctcgggacattggtaatgccatgaggtttgtggcccgccatgttttcaagcgtacatac
ccaggagccaatgtgaggagagttgctgtgttttttagcaacggtcaagccgtcagcagg
tcatccatcctcacagcgaccatggagttcagtgccctggatatcagtccggcagtcttt
gctttcaatgaaagagttttcctggatgaagcttttgggttcgacaacacagggacattt
caggtgattccagttcctcccgatggggactatgaaccgttggaaaggctgcgtctctgc
acactttgctatgataaatgctttccaaatacttgtgctgaagagattttattatctgga
aattcctacatggatgtagccttcctcttagacaactctcaacatatagcaaatgacgac
tttaaggctgtgaaaaccttgttgagctcagccatcgacaactttgacattgcttccaac
ccttcagtctcagactctggggacaggattgccttgttgagctattctccttgggatggt
tccagaagaaaaatggggacaataaaagtagagtttgagtttacaacttatgacaaccaa
ttcctaataaagagccacatccagacttccctccaacagctaaatggggaagccaccctt
ggtcataccctacaatgggccacggaaaatctcttcccaggaacacccaactcacgcaaa
cacaaggtcatctttgtgatctcggctggagaaaatcgtgagagaaaggagtatgtgaag
aagatggctttgagagccaagtgtcaaggctatgtcatatttgtgatttctctgggccct
gcacataaggacaacatagaagaattagccagctacccactggatcaccatctgatacag
cttgggagaatgcataaaccagatctgaattatgtggtgaagttcttaaagccatttgtg
tactcggtcagacgaggattcaatcagtacccaccaccattgctggaggatgcctgcagg
ctcatcagattggagggggatggtcagaacagcggtttccaatttactgctgagctacat
aaggtctcttcagacaaaaacagcctcatgggccaggaattaagtgctgggagagactca
tcttttgtgttggaggacggtggaggtgaccatttggtttacattccaagtaaaatatta
gagccacaaaaattagtggttaactatgaaaaagatcaggcatctgcagaacctacaagt
tttacttctggactcgaaaaccatggcagaaaagaagaactaggtcttacctctgcacct
ggagatgcctctcttcaagaatattacatggatgtggcgttcctcatagatacttcccaa
agagtaggaaataatgagtttaaggaactgaaagcttttatagcctcagtgcttgattac
tttcatatcgccccagatccactgacctccaccttaggagacagagtggctgtcctgagc
tactctccccctggctatctgcccaacactgaagaatgccctgtctacctggaattcgat
ctgctgacttacaacagtagagaccaaatgaaacaccatctccaagactctttccaccag
ctcaatggagacgtttttattggccatgccctgcagtggacaattgacaatgtctttgta
ggaactcccaatctgaggaaaaacaaagttatctttgtaatatctgctggggaaaccaac
cctttagacaaggaagtcttaaggagtgtatctctgagagccaagtgtcaaggctactct
atatttgtattttcctttggtcctgggcacaatgacaaggaattagaagaattagccagc
cgccccctggatcatcacctagttcagcttggccggatccatgagccagatttggactat
atcatcaagttcatcaagccatttgtccacttaatcagacgtgctatcaacaaatatccc
accaaagatctgagagctaaatgtgtgaacatcacctatcccagtccaagggacactggc
atggaagacactgtattactcattcccgaggtctatgaaatagagacaaaaaacagtgag
ctgtttggtgaatttggttcccaggagcagcatttcttagtgttagggaacaatcatagc
aatgattctgggaccacgagtgatgtgatccagaagttgtacatgctcttttcacctggg
gaattgatggtgaacgacaaagaagaggcacattcagaagaaattacagcttcagtaaat
gacaaacagcaaggagaaaaagatggcgaggacacaaaatga
DBGET
integrated database retrieval system
