Candidatus Midichloria mitochondrii: midi_01107
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Entry
midi_01107 CDS
T01561
Symbol
cafA
Name
(GenBank) ribonuclease Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mmn
Candidatus Midichloria mitochondrii
Pathway
mmn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
midi_01107 (cafA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmn03019
]
midi_01107 (cafA)
03009 Ribosome biogenesis [BR:
mmn03009
]
midi_01107 (cafA)
Enzymes [BR:
mmn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
midi_01107 (cafA)
Messenger RNA biogenesis [BR:
mmn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
midi_01107 (cafA)
Ribosome biogenesis [BR:
mmn03009
]
Prokaryotic type
rRNA processing factors
midi_01107 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF7125
Motif
Other DBs
NCBI-ProteinID:
AEI89384
UniProt:
F7XU25
LinkDB
All DBs
Position
complement(1048259..1049755)
Genome browser
AA seq
498 aa
AA seq
DB search
MVKRILIDAAHEEEIRLVLTEDNIIKAFDYHNKDRNSIKGNVYLAKVTRVEPSLQSAFVE
YGGNKQGFLPLAEIHPDYYQIPKNDKEAILESMAKAKQEAQNSGLDDIDEDAKGGGGEIS
RPLFYKKYKIQEVMRKDQALLVQVTKEERGNKGAALSTYISLAGRYCVLLPNSGNVGGVS
RKIDDAEERKRLRAVVQELSEHLEISNSVIVRTAGGHKTKTELKRDLSYLSRLWNNIRSH
TLSSVAPAFIHEEGDIIKKAIRDLYDSDIDEIIVSGLKAYENAKDFTKLLLPRHVDKVKL
HQAVTPIFSKYGIEEQLGKLYDHNVQLSSGGYIVINQTEALVAIDVNSGKSTGERSIENT
ALKNNLEAAKEVAGQLRLRDLSGLIVIDFIDMAEAKNRKEVEKALKDALSHDRARTQIGK
ISEFGILEMSRQRLRQSFSETYMLPCNHCAGRGRIRPENVTAIAIIRAIENEVARGIYNE
VKVSCSQELVLYLLNQKV
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaaagaatattaatagacgcagcacatgaagaagaaattagattagttcttaca
gaagacaatattataaaagcctttgattatcataataaagatagaaattcgatcaagggt
aatgtttacttagcaaaggttacaagagttgagccatccttacaatcagcttttgttgaa
tatggaggcaataaacaaggatttttacctttagcggaaattcaccctgattattatcag
atccctaaaaatgataaagaagcgatacttgaatccatggccaaagctaaacaagaagct
caaaattcagggttggatgatattgatgaagacgccaaaggaggcggaggggaaattagt
agacctttgttttacaagaaatataagattcaagaagtcatgagaaaagaccaagctcta
ttagtgcaggtcactaaagaagaacgtggtaataagggagcagctctttcaacatatata
tcattggctggacgatactgtgtactacttcctaattctggaaatgttggtggagtatct
agaaaaatagatgatgctgaagagagaaagaggcttagagcagtagtgcaagaattgagt
gaacatctggaaatttcaaatagcgtgattgtaagaactgccggtggtcataaaaccaag
acagaacttaaacgagatttgagttatttaagcagactttggaataatatacggtcacat
actctttcttcggttgcaccagcttttatacacgaagagggtgatataataaaaaaagcg
atcagggatctatatgatagcgatattgatgaaataatagtttcaggtttaaaagcttat
gaaaatgcaaaagactttacaaaattgcttttgccaaggcatgtagataaagtaaagttg
caccaagctgttacgcctattttcagcaagtatggtatagaggagcaattaggtaagctc
tacgatcacaatgtacaattaagctctggtgggtacatagtaataaatcagaccgaagca
ttagttgcaattgatgtaaattctggaaaatctacgggtgagagaagtattgaaaataca
gcgctgaaaaataacttagaagccgcaaaagaggtagcaggacagcttaggttaagagac
ttgtcaggcctaattgttattgattttatagatatggcagaggctaaaaatcgtaaagaa
gttgaaaaagccttgaaagatgcgttatctcatgacagagcgagaactcagataggtaag
attagcgaattcggtattttagaaatgtctagacaaaggctgcgtcaaagtttctctgaa
acttatatgttgccttgcaatcactgtgcgggtagaggtagaatcagaccagaaaatgtg
acagctatcgcaattattagagctatagaaaatgaggtagcaaggggcatctataatgaa
gtcaaagtttcatgctcacaagagctagtcctatatttattaaatcaaaaagtgtaa
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