Candidatus Methylospira mobilis: F6R98_14840
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Entry
F6R98_14840 CDS
T06248
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mmob
Candidatus Methylospira mobilis
Pathway
mmob03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F6R98_14840 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmob03021
]
F6R98_14840 (rpoB)
03400 DNA repair and recombination proteins [BR:
mmob03400
]
F6R98_14840 (rpoB)
Enzymes [BR:
mmob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F6R98_14840 (rpoB)
Transcription machinery [BR:
mmob03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F6R98_14840 (rpoB)
DNA repair and recombination proteins [BR:
mmob03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F6R98_14840 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
HR1_TOCA
Motif
Other DBs
NCBI-ProteinID:
QFY43744
UniProt:
A0A5Q0BNG5
LinkDB
All DBs
Position
complement(3272589..3276665)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRKSFGKRQDVLEVPYLLATQVDSYKRFLQADTRHVGRVDYGLHAALTSV
FPIASHTGHAVLEYVSYRLGEPAFDVKECQQRGATYAAPLRVLVRLVIYDKESPASAKVV
KDIREQEVYMGEIPLMTDTGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLFNA
RIIPYRGSWLDFEFDHKDCVYVRIDRRRKLPATVLLRALGYENEQIIEEFFDTNQFSFEG
GSIFLNLVPERLRGDIASFDLSVGDKVVVEKGQRITARHIRQMEKAGLNKIEVPRDYLAG
RILSHNLIDTASGELLGKVNDEVTEDMVSRILAAGVKSVDVLYVNDLDRGPYMSHAMRID
TTENQLDALVEIYRMMRPGEPPTREAAQALFENLFFTSERYDLSAVGRMKFNRRLGRVEI
EGSGVLSKEDIIDVLKELINIRNGNGQVDDIDHLGNRRVRSVGEMVENQFRLGLVRVERA
VKERLSLADSEGLMPQEIINAKPVAASIKEFFGSSQLSQFMDQSNPLSEITHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRKV
VDGFVTTEIEYLSAIEEGKYYIAQASASMDENGRLKDDLVSSRYRDEFTLSTPDKINYMD
VSSKQIVSVAASLVPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERIVAKDSGV
AVVALRGGFIESVDASRIVVRVNNEETEAGVQGVDIYNLVKYTRSNQNTCINQRPLVKPG
DKVAKGDILADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVQDDRFTTIHIE
EKSCVARDTKLGPEEITADIPNVGEAALAKLDESGIVHIGAEVKAGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMDGTVIDVQIFTRDGVKKDARAQQIEETQIE
HVKKDLADQLRIIEKDIFERIEQILLGKISQSGPGGLKSGTVIEKNYLDGLKPAQWLQIR
VKDEEVNLNIEAAAAQLEQQREEINQRLEEKRKKITMGDDLAPGVLKMVKVYLAVKRRIQ
PGDKMAGRHGNKGVVSRIVPVEDMPYTADGTPVDIVLNPLGVPSRMNVGQVLETHLGWAA
KGLGLKLGKMLEAKAKVQELRDFLDTIYNRSGRVENLDEFTDEEIVELSFNLRKGVPLAT
PVFDGATEEDIKTMLRLADLPESGQTRLYDGRTGDFFERDITVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM
YKNIVDGDHRMEAAMPESFNVLIKEIRSLAINIELEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcatattctttcactgagaaaaagcgaattcgtaaaagttttggcaagcgtcaggac
gttctcgaagtaccctatcttttggctacccaggttgattcctataaacggtttttgcaa
gcggataccaggcatgtcggcagagtggactatggcttgcacgccgcgcttacttccgtt
tttccgatcgcaagccataccgggcatgccgtgctcgaatatgtcagttaccgtcttggc
gaaccggccttcgatgtaaaggagtgccagcagcgcggagcgacttatgctgcaccgctg
cgcgttctggttcgtttggtcatttacgacaaggagtcgcctgccagcgcgaaagtggtt
aaagatattcgcgagcaggaagtctacatgggagaaatcccgttgatgacggataccgga
acttttgtgatcaacggaaccgagcgcgtcatcgtttcccagttgcatcgctcgccgggg
gttttcttcgatcatgatcggggaaaaacccattcatcgggcaagctgctgtttaacgcc
cgcatcatcccctaccgtggttcatggctggactttgagttcgatcacaaggattgcgtt
tacgtgcgtatcgatcgccgtcgtaagctgcctgcaaccgttttattgcgtgcgcttggc
tatgaaaacgagcagattatcgaagagttcttcgataccaatcaattcagtttcgaaggc
gggagtatattcctgaatcttgttcccgagcgtttgcgcggcgatatcgccagcttcgat
cttagcgtcggcgacaaggttgtggttgagaaaggtcaacgtatcacagctcgccatatc
cggcagatggaaaaggcgggcctgaacaagatcgaagttccgcgagactatctggccggc
cgcattttgtcgcacaatctgatcgacaccgcttccggcgagttgctcggcaaggtgaac
gacgaggttacagaagatatggtcagccgtattctggcggcgggcgtgaaaagcgttgac
gttttgtatgtcaatgacctcgatcgtggaccttatatgtcgcatgcaatgcgcatcgat
actacggaaaatcagcttgacgcgctggttgaaatctatcgcatgatgcgtccgggcgaa
ccgccaacgcgggaagcggctcaggcattgtttgagaacctgttttttacctcggagcgt
tacgatctgtccgcggttggacgcatgaagttcaaccgtcgtttgggacgcgtcgaaatc
gaggggtccggggtgttgtccaaggaagacattatcgacgtgctgaaggagctgatcaac
atccgtaacggtaacggacaggtcgacgatatcgatcatctgggtaatcgccgggtacgc
tcggtgggtgaaatggtcgaaaaccagttccggctgggcctggtgcgcgttgagcgcgcg
gttaaggagcgtctgtctctggccgactccgaagggctgatgccgcaggaaatcatcaat
gccaaaccggtagcggcttcgatcaaagagtttttcggctccagccagctctcgcagttc
atggatcaaagcaatccgctttccgagattacccacaaacgccgcgtatcggcgctcggg
ccgggtggtcttgcccgtgagcgcgccggcttcgaagtgcgcgacgtgcataccacgcac
tacggacgcgtatgtccgatcgaaacgcccgaaggtccgaatatcggattgatcaattcg
ctggctgtctacgcgcgcaccaatgaatacggtttcctggagacgccgtaccggaaagtg
gtggatgggtttgttacgactgaaattgagtacctgtcggctatcgaggaaggcaagtat
tacatcgcgcaggccagcgcctccatggatgaaaacggccgtctgaaggacgatctggtt
tccagccgttatcgcgatgaatttaccctgtccacgccggataaaatcaattacatggac
gtatcgtccaaacagatagtctcagtggcggcttcgctggtgccgttcctcgaacacgat
gacgcgaaccgcgcattgatgggatcgaacatgcagcgtcaggccgtgccgaccttgcgt
gcggaaaaaccgctggtcggcaccggtatggaacgtatcgtggcaaaggattccggcgtg
gccgttgttgcattgcgcggtggttttatcgagtcggtcgatgccagtcgcattgtcgtg
cgcgttaataacgaagaaacagaagctggtgttcaaggcgttgatatctataatctggtt
aaatacacccgctcgaaccagaatacctgcatcaatcagcgcccgctggttaaaccgggc
gacaaggttgccaaaggcgatatccttgcggacgggccttcgaccgatatgggcgaactg
gcgttggggcagaatctgctggttgccttcatgccgtggaacggctacaacttcgaagat
tccatcctgatctccgagcgtgtggtgcaggatgatcgctttaccacgatacatatcgag
gaaaagtcctgtgtagcgcgcgataccaaactggggcctgaggaaatcactgcggacata
cccaatgtcggcgaggcggctcttgccaagctggacgaatcgggtattgtgcatatcggt
gccgaggtcaaggccggcgatattctggtcggcaaggttacgccgaagggcgaaacccag
ttgacgcctgaagaaaagctgctgcgcgcgattttcggcgaaaaggcttcggacgtgaag
gatacctcgttgcgcgttccgtcagggatggacggaaccgtcatagacgtgcagatattc
acgcgcgacggcgtcaaaaaggacgcgcgcgcacagcagatagaagaaacccagattgag
catgtcaagaaggatctggccgatcagctgcgtattatcgaaaaggatatttttgagcgt
attgaacaaatcttgctcggcaagatatcacaaagcggtcccggcggtttgaagtcaggt
acggttatcgaaaaaaactaccttgatggtttgaaaccggcgcagtggctgcagattcgc
gtcaaggacgaagaggtcaatctcaatatcgaagcggcggcggcacagctggaacagcag
cgcgaagagattaatcagcgcctggaggaaaagcgaaagaaaattaccatgggtgacgat
ctcgcgccaggcgtgctcaagatggtcaaggtctatctggccgttaaacgcagaattcag
ccgggggacaaaatggcgggccggcacggcaacaagggtgttgtttcccgcattgttccg
gtcgaggatatgccttatacggcagacgggacaccggtcgatatcgtgctcaacccgctg
ggcgttccatcgcgtatgaatgtcggtcaggtgcttgaaacacatttgggctgggcggct
aaaggactgggcctgaagcttgggaagatgcttgaagccaaggccaaggttcaggagctc
cgcgattttctcgacacaatctataatcgtagtggacgggtcgaaaacctcgatgaattt
acggatgaggaaattgtcgaattgtcctttaatctgcgcaaaggcgtgccgttggcgacc
ccggttttcgacggtgcaacggaagaagacattaaaaccatgctgcgtctggccgacctg
cccgaaagcggtcaaacccgtctctacgacgggcgtacaggggatttcttcgagcgcgat
attaccgtcggctacatgtacatgctcaaactgaatcatctggttgacgataagatgcat
gcgcgttcaaccgggccctacagtctggtaacccagcagcctttgggcggcaaagcgcag
ttcggaggccagcgcttcggggaaatggaagtgtgggcgttggaagcctacggcgctgct
tataccctgcaggaaatgctgaccgtcaaatccgacgatgtgaacggtagaaccaaaatg
tataaaaacatagtcgatggcgatcatcggatggaggctgcgatgccggagtcctttaac
gtactgatcaaggaaattcgttctctggctatcaacatcgagttggaacaggactag
DBGET
integrated database retrieval system
