Methylomonas montana: QZJ86_17105
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Entry
QZJ86_17105 CDS
T09581
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mmot
Methylomonas montana
Pathway
mmot03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmot00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QZJ86_17105 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmot03021
]
QZJ86_17105 (rpoB)
03400 DNA repair and recombination proteins [BR:
mmot03400
]
QZJ86_17105 (rpoB)
Enzymes [BR:
mmot01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QZJ86_17105 (rpoB)
Transcription machinery [BR:
mmot03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QZJ86_17105 (rpoB)
DNA repair and recombination proteins [BR:
mmot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QZJ86_17105 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Peptidase_M23
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WKJ89721
LinkDB
All DBs
Position
complement(3706519..3710595)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRNNFGKGTEVLEVPYLLATQIDSYANFLQSGIEPDKRRNQGLHAAFSSV
FPVVSHSGYAVLEYVKYRLGEPAFDVRECQQRGATFSAPLRVLVRLVIYDKDAPANTKVV
KDIREQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKLLFNA
RVIPYRGSWLDFEFDHKDAVYVRIDRRRKIPATILLRALGYENEEMIKIFFETNKFSLSA
DKLMFHVIPERLRGEMAVFDIKHDGKVIIEEGRRITAKHVRQLDKAGVTEIEVPRDYLYG
KILGHNVIDTSTGELLANVNDELSENLLQKLIDAGVAEINTLYVNDLDRGPYISNSMRLD
TTTNRLEALVEIYRMMRPGEPPTVESAENLFENLFFTDERYDLSAVGRMKFNRRLGREET
EGLGTLSKEDIIDVLKELIKIRNGNGTVDDIDHLGNRRVRSVGEMIENQFRIGLVRVERA
VRERLTLADSEGYMPQEIINAKPVSAAVKEFFGSSQLSQFMDQNNPLSQVTHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLSVYARTNEYGFLETPYRKV
VDGKVTDQVDYISAIEEGEYVIAQSSVAVDESGKLVEGLVSCRYKDEFTLASSDTVQYMD
VSSKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERVVAKDSGV
TVVATRGGRIEAVDAGRIVVRANDNETVAGVPGVDIYNLIKYTRSNQNTCINQKPLVKLG
DIVRAGDILADGPSTDLGELALGQNMLIAFMPWNGYNFEDSILVSERVVKEDRFTTIHIE
EKTCVARETKHSPEEITADIPNVSEEALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKAADVKDTSLRVPGNVRGTVIDVQVFTRDGVKKDKRALEIEEAEIK
RYRKDLDDQLKIVEHDIFARVKTLLAGKKAEKGPNGLKKGDEISAGYLDGLVPSELLKIR
TQDEDVNLQLETVAEHVEQQRKEFDERFEQKKKKITMGDDLAPGVLKMVKVYLAVKKRIQ
PGDKMAGRHGNKGVISQIVPIEDMPYTADGNPVDILLNPLGVPSRMNVGQVLETHLGWAA
KGLGIKIGKMLEAQAKVQEIRGFLEQIYNCSGRKEDLNTFSDKEIVEMAVNLISGVPMAT
PVFDGASEEDIRTMLRLADLPEHGQTVLYDGLTGEPFEREVTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTRM
YKNIVDGNHSMEAGMPESFNVLVKEIRSLAVNIEMEQD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcttttaccgaaaaaaagcgtatccgtaataattttgggaaaggtactgaa
gtacttgaagttccctatcttttggcaacacaaattgattcgtatgcgaatttcttgcag
tctggcatagagccggataaaagacgcaatcaagggctgcatgccgcattctccagcgtt
tttccggtagtgagtcactccggctatgccgtattggagtatgttaaatatcgcttgggg
gaacccgctttcgatgtaagagagtgtcaacagcgcggtgctactttttcagctccgcta
cgcgtattagtgcggctggttatctatgataaagatgcgccagccaataccaaggtcgta
aaagacattagagagcaagaagtttacatgggtgaactgccgctgatgaccgataacggt
accttcgttatcaacggtactgagcgtgttatcgtttcgcaattgcacagatcgccaggg
gtgttctacgatcacgataaaggtaaaacccattcgtcagggaaactgctgttcaatgct
cgggtcattccctatcgcggctcatggttggattttgaattcgatcataaagatgccgtt
tatgtgcggatagacagacgccgaaaaattccggcgactattttgttgcgggctttaggt
tatgaaaacgaagaaatgatcaaaattttcttcgaaaccaataagttctcattgagcgcc
gacaaattaatgttccatgtaattccggaaagattacgtggtgaaatggccgtgttcgat
attaaacatgacggcaaggtcatcatcgaagaaggccgcagaattaccgccaagcatgta
cgccagttggataaagccggcgtgaccgaaatcgaggtgcctagagactatttgtacggg
aaaatcctcggacataacgttattgatacgtcgactggcgaattgttggccaatgtcaac
gatgagctcagcgagaacctgttgcaaaaattgatcgacgccggtgtcgccgagatcaac
accttatatgtcaacgatttggatagaggtccttacatctccaattcgatgcgcttggat
accaccactaaccgtctggaagcgctggtggaaatttaccggatgatgcgtcctggtgag
ccgcctaccgtggaatctgcggaaaatctgttcgaaaatctgtttttcaccgatgagcgt
tatgacttgtccgctgttggtcggatgaaattcaatcgtcgtttgggtcgtgaagaaacc
gaaggcttgggtacgctcagtaaagaagacatcatcgatgtgctgaaagaactgatcaaa
atcagaaacggcaatggcactgtcgacgatatcgaccatttgggtaacaggcgcgtgcgt
tccgtcggtgaaatgatcgagaaccagttccgaattggcttggtcagagtcgagcgcgca
gtcagggagcgtttgaccttggcagattccgaaggctatatgccacaggaaatcatcaac
gcgaaacctgtatctgcggcagtcaaagaattctttggttccagccagttgtcgcagttt
atggaccaaaacaatccgctgtcgcaagtcacccataaacgccgggtttctgctttgggc
ccaggtggtttggccagagagcgagctggatttgaggttcgcgacgttcacaccactcac
tatggccgagtttgccctatcgaaacgccagagggtcccaatatcggtttgattaactct
ttgtcggtttacgccagaactaatgagtatggcttcctggaaaccccttaccgaaaagtg
gtagatggcaaagtcaccgatcaagtggattacatttccgcgatcgaagaaggcgagtac
gtgatcgcgcagtccagcgtggctgttgacgaaagcggcaaactggtcgaaggtctagtg
tcttgtcggtataaagacgaattcaccttggcttcgtccgacaccgtgcaatatatggac
gtatcgtccaagcagatcgtatcggttgcggcgtctattattccgttccttgagcatgat
gacgcgaaccgcgcgctgatgggttcgaacatgcaacgtcaagcggtccccactttgcgc
gccgaaaaaccgctggttggtaccggtatggaacgcgtagttgcgaaagactcaggtgtg
acagtggtcgctacccgtggtggtcgtatcgaagccgtcgatgctggtcgtatcgtggtg
cgtgccaacgataacgaaaccgtagctggcgtgccgggtgtcgatatttataacttgatc
aaatacacccgttccaaccagaacacctgtatcaaccaaaaaccattggttaaattgggc
gacattgttagggctggcgatattttggccgacggtccatctacagacctcggcgaattg
gcgctgggtcaaaatatgttgatcgccttcatgccttggaacggttataacttcgaagac
tccattttggtgtccgagcgggtggtcaaagaagatcgatttacgaccattcatatcgag
gaaaaaacctgcgttgctcgcgagactaaacatagtcctgaagagatcaccgccgatatt
ccgaacgtcagtgaagaagcattatccaaacttgacgagtccggtatcgtttacgtcggt
gccgaagtcaaaggtggcgatattctggtcggcaaggtcacgccaaaaggcgaaacccag
ctgacgccggaagaaaaattgctgagagcgattttcggtgagaaagcggccgatgttaaa
gatacttcattgcgggtgcccggcaacgttcggggtaccgttatcgatgtgcaggtcttt
actcgtgatggcgttaagaaagataagcgcgcgctggagatcgaggaagccgaaatcaag
cgctaccgtaaagacttggatgaccagttgaagattgtcgagcacgacattttcgccagg
gttaaaactcttttggcgggtaaaaaagctgaaaaaggtccgaacggtttgaagaaaggc
gacgaaatcagtgccggttatctcgatggactggtgccatccgaattgctgaaaattcgt
actcaagacgaagacgttaatctgcaattggaaacagtggcggagcacgtcgaacaacaa
agaaaagagttcgacgaacgtttcgaacagaagaagaaaaaaatcaccatgggcgacgat
ttggcgccaggtgtgctgaaaatggtcaaagtgtatttggccgttaaaaagcggattcag
cctggcgacaaaatggccggccgccacggtaacaaaggtgttatctcgcaaattgtgccg
atcgaagatatgccttataccgcagacggtaatccagtcgacatcctgctgaacccattg
ggtgtaccttcgcggatgaacgtcgggcaggtgcttgagactcacttgggatgggcagct
aagggcttgggtatcaagattggcaaaatgctggaagcgcaggccaaggttcaggagatc
aggggtttcttggagcaaatctacaattgcagcggtaggaaggaagatttgaataccttc
tcggataaagaaattgtggagatggctgtcaatctgatcagtggtgtgccgatggcgacc
ccggtattcgatggtgcttccgaagaagatattcgtaccatgctacgtttggccgattta
cccgagcacggtcaaaccgtgctttacgatggtttgactggcgaaccgttcgaacgcgaa
gtcacggtcggttacatgtatatgctgaaattgaaccacttggtggatgacaaaatgcat
gcgcgttccactggtccatacagtctcgtcacgcaacagccgttgggcggtaaagcgcag
ttcggcggtcagcgtttcggtgagatggaggtttgggcgttggaagcctatggcgccgca
tacacattgcaggaaatgttgacggtcaagtccgacgacgtgacaggcagaaccagaatg
tacaaaaacattgtcgatggcaatcactcgatggaagccggtatgccggaatccttcaac
gtattggtcaaagaaatacgttcgttggcagtgaatatcgaaatggaacaagattaa
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