Janthinobacterium sp. Marseille: mma_3420
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Entry
mma_3420 CDS
T00561
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit/140 kD subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mms
Janthinobacterium sp. Marseille
Pathway
mms03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
mma_3420 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mms03021
]
mma_3420 (rpoB)
03400 DNA repair and recombination proteins [BR:
mms03400
]
mma_3420 (rpoB)
Enzymes [BR:
mms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
mma_3420 (rpoB)
Transcription machinery [BR:
mms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
mma_3420 (rpoB)
DNA repair and recombination proteins [BR:
mms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
mma_3420 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
DNAPolymera_Pol
Motif
Other DBs
NCBI-ProteinID:
ABR88926
UniProt:
A6T3L3
LinkDB
All DBs
Position
complement(3794180..3797902)
Genome browser
AA seq
1240 aa
AA seq
DB search
MGELPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARIIPYRGSW
LDYEFDPKDILFFRVDRRRKMPVTILLKAIGMTPEQILENFFVFDDFALHADGAEMAFVA
ERLRGEVARFDITDKAGKVLVAKDKRINSKHVRDVEAAGIKNISVPEDYLLGRILAKNIV
DKETGEVIANANDELTEDLLARLREGKVTHIQTLYTNDLDQGGYISQTLRMDDTTDQMAA
KVAIYRMMRPGEPPTEDSVEALFNGLFYNADRYDLSAVGRMKFNRRIGRDELTGDMTLSN
DDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQA
EADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRER
AGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRKVEGSKITDQ
IDYLSAIEEGRYIIAQANATIDKSGALSDELVSAREAGETILVSPERVQYMDVAPGQVVS
VAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKAFVGTGIERTVAVDSGTTVQALRGG
IVDYIDAGRVVIRVNDDEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVQVGDRVAKHDV
IADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELSVVARD
TKLGAEEITRDISNLAENQLARLDESGIVYIGAEVTAGDTLVGKVTPKGETQLTPEEKLL
RAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDDELQRYRLDLND
QLRIVEGDAFQRLEKMLIGKVVNGGPKKIAKGAKITKEYLDDLDKYHWFDIRPADDTSAN
ALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELPPGVQKMVKVYLAVKRRLQPGDKMAGR
HGNKGVVSRILPIEDMPHMADGTPADVVLNPLGVPSRMNVGQVLEVHLGWAAKGLGLRIG
EMLNAQVQIAELRKFLAAIYNESGKTEDLDSFSDAEILELAGNLKNGVPFATPVFDGADE
GETRRMLDLAYPDHIAKQLGMTASKNQVTMYDGRTGEAFERTVTVGYMHYLKLHHLVDDK
MHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRT
KVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERD
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaattgcctttgatgacttcgaccggttccttcgtgattaacggtacagagcgc
gttatcgtgtcgcagttgcatcgttcgccaggcgtgttctttgaacatgatcgcggcaag
acgcactcgtccggtaaattgctgttctccgcacgtatcattccttaccgcggttcatgg
ctggactacgaattcgatccgaaagacatcctgttcttccgcgttgatcgtcgccgcaag
atgccagtcacgatcctgttgaaggcaatcggcatgacgccggaacaaatcctcgaaaac
ttcttcgttttcgacgatttcgcattgcatgccgatggcgccgaaatggctttcgtcgca
gaacgcctgcgcggtgaagttgcacgtttcgacattaccgacaaagccggcaaagtgctg
gtggcaaaagacaagcgtatcaacagcaagcacgtccgtgacgtggaagctgccggcatc
aagaacatctcggtaccggaagactacctgctcggccgtatcctggcgaaaaacatcgtt
gataaagaaaccggcgaagtcattgccaatgccaacgatgaattgaccgaagacctgctg
gcacgcctgcgcgaaggtaaagtaacccacatccagaccctgtacaccaacgatctggat
caaggcggctacatctcgcaaacactgcgtatggatgacaccaccgatcagatggcagcg
aaagtcgctatctatcgcatgatgcgtccaggcgaaccgccaaccgaagattcggttgaa
gcattgttcaacggcttgttctacaacgcagatcgttacgacctgtcggctgtcggccgt
atgaaattcaaccgtcgtatcggtcgcgatgagctgaccggcgacatgaccttgtcgaac
gacgacgtactggccgtgatcaagatcctggttgagctgcgcaatggtcgcggcgaagtc
gatgatatcgatcacttgggtaaccgtcgcgtacgttgcgtcggcgaattggctgagaac
caattccgtgccggtctggtgcgtgttgagcgtgctgtcaaggaacgcctcggccaagcc
gaagccgacaacctgatgccgcatgacctgatcaactcgaagccgatctcggcagcgatc
cgtgaattcttcggttcgtcgcagttgtcgcaatttatggatcaaaccaatccattgtcg
gaaatcacgcacaaacgtcgcgtctccgctctcggacctggcggcttgacccgtgaacgc
gcaggctttgaagtacgtgacgtgcatccgacccactacggccgtgtatgcccgatcgaa
acaccagagggcccgaacattggtctgatcaactcgctggctctgtatgcccgcctgaac
gaatacggtttcctggaaaccccatatcgtaaagtcgaaggcagcaaaatcaccgaccag
atcgattacctgtccgcgattgaagaaggccgttacatcatcgctcaggcgaatgcgacc
atcgacaaatcgggcgcgctgtcagatgaattggtttccgcacgtgaagctggcgaaacg
attctggtatcgccagaacgcgtccagtacatggacgttgcgccaggccaggttgtatca
gttgctgcttcgctgattccgttcctcgaacacgatgacgcgaaccgcgcattgatgggt
gccaacatgcaacgtcaggctgttccttgcctgcgtccagaaaaagcattcgttggtacc
ggtatcgaacgtacggttgcagttgactcgggtaccacagtgcaggcattgcgcggcggt
atcgttgattacatcgatgcaggccgtgtcgtgattcgcgtcaatgatgacgaagcacaa
gccggtgaagtcggtgtagatatctacaacctgatcaagtacacccgttcgaaccagaac
accaatattaaccaacgccctatcgtgcaagtcggcgatcgcgttgcaaaacatgacgtc
atcgctgacggcgcatcgacagatctgggcgaattggccctgggtcaaaacatgctggtc
gcgtttatgccatggaacggttacaacttcgaagattcgattctgatctccgaaaaagtt
gtggctgatgaccgttacacctcgattcatatcgaagagttgtcggttgttgcacgtgac
accaagctgggtgcggaagaaatcacacgtgatatctccaatctggctgagaaccaactg
gcacgcctggatgaatccggtatcgtctacatcggtgcagaagtgaccgctggcgacacc
ctggtcggtaaagtaacgcctaaaggcgaaacccaactgacaccggaagaaaaattgctg
cgcgcgattttcggcgaaaaagcatccgacgtaaaagatacatcgttgcgcgtaccgtcc
ggcatggtcggcaccgtaatcgacgtgcaagtgtttacacgtgaaggcattccacgcgac
aaacgtgcacaacagattatcgacgacgaactgcaacgctatcgtttggatttgaacgat
cagctgcgtatcgttgaaggcgatgcattccagcgtctggaaaaaatgttgatcggtaaa
gtcgtcaacggcggtcctaagaaaatcgctaaaggcgcgaaaatcactaaagagtatttg
gacgatctggacaaataccactggttcgatattcgcccggcagatgacacatcggccaat
gctttggaagctattaaagaatccatcgctgaaaaacgccaccagttcgatctggcattc
gaagaaaaacgcaagaaactgacgcaaggcgacgaattgccgccaggcgtacagaagatg
gtcaaagtgtatctggcagtcaaacgtcgcctgcaacctggcgacaaaatggcgggtcgt
cacggtaacaaaggtgtcgtatcacgcatcttgcctatcgaagacatgccgcacatggct
gacggtacaccagcagacgtcgtgctgaacccattgggtgttccatcgcgtatgaacgtt
ggtcaggttctggaagttcacttgggctgggccgctaaaggtctgggcttgcgtatcggc
gaaatgctgaatgcacaagtacaaatcgctgaactgcgtaaattcctggctgcgatttat
aacgaatctggcaaaacggaagatctggacagcttcagcgatgcagaaatcctggaactg
gctggcaacctgaaaaacggcgtgccgttcgcaacaccggtgtttgacggtgctgatgaa
ggtgaaacccgtcgcatgctggatctggcttacccggatcacattgcgaagcaattgggt
atgaccgcttccaagaaccaggtcacgatgtatgacggtcgtaccggtgaagcgtttgaa
cgtacagtaaccgtcggttacatgcactacctcaaactgcatcacttggttgatgacaag
atgcatgctcgttcgaccggtccttactcgctggttacgcagcaaccactgggcggtaaa
gctcagttcggtggccagcgcttcggtgagatggaagtctgggcactggaagcatacggc
gcgtcctacgtcttgcaagagatgttgaccgtcaagtccgatgacgtgaatggccgtacc
aaagtgtacgaaaatctcgtcaagggcgaccacgtcatcgacgccggcatgccggaatcc
ttcaacgttctcgttaaggaaatccgctcgctgggtatcgacatcgacctggaacgcgac
tga
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