Mus musculus (house mouse): 100041294
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Entry
100041294 CDS
T01002
Symbol
Supt4b, Gm3258, Supt4h1b, Supt4h2
Name
(RefSeq) SPT4B, DSIF elongation factor subunit
KO
K15171
transcription elongation factor SPT4
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
100041294 (Supt4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmu03021
]
100041294 (Supt4b)
03019 Messenger RNA biogenesis [BR:
mmu03019
]
100041294 (Supt4b)
Transcription machinery [BR:
mmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
100041294 (Supt4b)
RNA polymerase I system
100041294 (Supt4b)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
100041294 (Supt4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt4
Motif
Other DBs
NCBI-GeneID:
100041294
NCBI-ProteinID:
NP_035639
MGI:
1335090
UniProt:
Q9Z199
LinkDB
All DBs
Position
10:complement(31289722..31290431)
Genome browser
AA seq
117 aa
AA seq
DB search
MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI
NAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT
NT seq
354 nt
NT seq
+upstream
nt +downstream
nt
atggccctggagacggtaccgaaggacctgcggcatctgcgggcttgtttgctgtgctcg
ttagtcaagactatagaccagtttgaatatgatgggtgtgacaattgcgatgcataccta
caaatgaagggcaacagagagatggtttatgactgcaccagctcttcatttgatggaatc
aatgcgatgatgagtccagaggacagctgggtctccaagtggcagcgagtcagtaacttt
aagccaggtgtatatgctgtgtccgtcactggtcgcctgccccaaggaatcgtgcgggag
ctgaaaagtcgaggagtggcctacaaatccagagacacagcaataaagacctag
Mus musculus (house mouse): 20922
Help
Entry
20922 CDS
T01002
Symbol
Supt4a, Supt4h, Supt4h1, Supt4h1a
Name
(RefSeq) SPT4A, DSIF elongation factor subunit
KO
K15171
transcription elongation factor SPT4
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
20922 (Supt4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmu03021
]
20922 (Supt4a)
03019 Messenger RNA biogenesis [BR:
mmu03019
]
20922 (Supt4a)
Transcription machinery [BR:
mmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
20922 (Supt4a)
RNA polymerase I system
20922 (Supt4a)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
20922 (Supt4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt4
Motif
Other DBs
NCBI-GeneID:
20922
NCBI-ProteinID:
NP_033322
MGI:
107416
Ensembl:
ENSMUSG00000020485
UniProt:
P63271
LinkDB
All DBs
Position
11:87628377..87634449
Genome browser
AA seq
117 aa
AA seq
DB search
MALETVPKDLRHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI
IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAYKSRDTAIKT
NT seq
354 nt
NT seq
+upstream
nt +downstream
nt
atggccctggagacggtaccaaaggacctgcggcatctgcgggcttgtttgctgtgctcg
ttagtcaagactatagaccagttcgaatatgatgggtgtgacaattgcgatgcataccta
caaatgaagggcaacagagagatggtttatgactgcaccagctcttcatttgatggaatc
attgcgatgatgagtccagaggacagctgggtctccaagtggcagcgagtcagtaacttt
aagccaggtgtatatgctgtgtccgtcactggtcgcctgccccaaggaatcgtgcgggag
ctgaaaagtcgaggagtggcctacaaatccagagacacagcaataaagacctag
Mus musculus (house mouse): 20924
Help
Entry
20924 CDS
T01002
Symbol
Supt5, Spt5, Supt5h
Name
(RefSeq) suppressor of Ty 5, DSIF elongation factor subunit
KO
K15172
transcription elongation factor SPT5
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
20924 (Supt5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmu03021
]
20924 (Supt5)
03019 Messenger RNA biogenesis [BR:
mmu03019
]
20924 (Supt5)
Transcription machinery [BR:
mmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
20924 (Supt5)
RNA polymerase I system
20924 (Supt5)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
20924 (Supt5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW
KOW4_SPT5
KOW2_Spt5
KOW5_SPT5
Spt5-NGN
KOW7_SPT5
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
DUF3912
Ribonuc_P_40
Motif
Other DBs
NCBI-GeneID:
20924
NCBI-ProteinID:
NP_038704
MGI:
1202400
Ensembl:
ENSMUSG00000003435
UniProt:
O55201
LinkDB
All DBs
Position
7:complement(28014316..28038341)
Genome browser
AA seq
1082 aa
AA seq
DB search
MSDSEDSNFSEEEDSERSSEAEEAEVEEDQRSAAGSEKEEEPEEEEEEEEEYDEEEEEED
DDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRSGA
RRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTV
KCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGV
GNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNT
ISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFE
GNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQP
GDNVEVCEGELINLQGKVLSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIA
GRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQL
DPRTVGVIVRLERETFQVLNMHGKVVTVRHQAVTQKKDNRFAVALDSDQNNIHVKDIVKV
IDGPHSGREGEIRHLYRSFAFLHCKKLVENGGMFVCKARHLVLAGGSKPRDVTNLTVGGF
TPMSPRISSPMHPSAEGQHGGFGSPGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVVKD
ATESTARVELHSTCQTISVDRQRLTTVDSQRPGGMTSTYGRTPMYGSQTPMYGSGSRTPM
YGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTP
SPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQPSP
SPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYNPH
TPGSGIEQNSSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVTGGMCSVYLKDSEKVVSIS
SEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIKILNLRFLGKLL
EA
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacagcgaagacagcaacttctccgaggaggaggacagcgagcgcagcagcgag
gcggaggaggccgaggttgaggaagaccagcgaagtgctgcaggcagtgaaaaagaggag
gagcctgaggaagaggaggaggaagaggaagaatacgatgaggaagaagaggaggaagat
gatgataggccccccaagaaaccacgccatgggggcttcattttagatgaggctgatgta
gatgatgaatatgaagatgaagaccagtgggaagatggagctgaagatatcctggagaaa
gaagagattgaagcctccaatattgataacgttgtgctggatgaagaccgctctggggct
cgtcgtctgcagaatctctggagggaccagagagaagaagaactgggcgagtattacatg
aagaaatatgctaagtcgtctgtgggagagacggtgtatggagggtctgacgagctctca
gatgacatcactcagcagcagctgctcccaggagtcaaggaccccaacctgtggactgtc
aagtgtaagattggggaggaacgagccacggcaatttccttgatgcggaaattcatcgct
taccagttcacagacacacccctgcagattaagtcagtggttgcccctgagcacgtgaag
ggctacatctatgtggaggcctacaaacagacccatgtgaagcaggccattgaaggtgtg
ggcaacctgcggcttggctactggaaccagcagatggtgcctattaaggagatgaccgat
gtactcaaggtggtgaaggaggtggccaacctgaagccgaagtcctgggtccgcctcaag
cgaggcatctacaaagatgacattgctcaggtggactatgtggagcccagccagaacacc
atttccctgaagatgatcccgcgcatcgactacgaccgcatcaaagcccgaatgagcctg
aaagactggtttgccaaaaggaagaagttcaagcggcctccacagaggctctttgatgca
gagaagatcaggtccttggggggtgatgttgcctctgatggtgacttcctcatctttgag
gggaaccgctacagccgaaagggcttcctgttcaagagctttgccatgtctgctgtgatt
acagaaggtgtgaagcccacactgtcagagctggaaaagtttgaagatcagcctgagggc
atcgacctggaggttgtgactgaaagcacagggaaggagcgggaacacaatttccagcct
ggggacaatgtggaggtgtgcgagggcgagctcatcaacctacagggcaaggtcctcagc
gtggatggcaacaagatcactatcatgcccaagcacgaggacctcaaggacatgcttgag
ttccccgctcaggaacttcggaagtacttcaagatgggggaccacgtaaaagtgattgct
ggccgatttgagggtgacacaggtctcattgtgcgggtggaagagaactttgttattctc
ttttcagacctcaccatgcatgagttgaaagtgcttccccgagacctgcagctctgctca
gagacagcctcaggcgtggatgttgggggccagcatgagtggggtgagctggtgcagctg
gatccccgtactgtgggtgtcatcgtgcggctagagcgagaaaccttccaggttctcaac
atgcacgggaaggtggtgaccgttaggcaccaggccgtgacgcagaagaaggacaaccgc
ttcgctgtggctctggactcggatcagaacaacatccatgtgaaggacattgtcaaggtc
atcgatggccctcactcaggccgagagggtgagatccgccatctgtaccgcagctttgcc
ttcctgcactgcaagaagctggtggagaacggcggcatgtttgtctgtaaggcacggcac
ctggtgttggctgggggctcaaagccccgggatgtgaccaatttaactgttggtggcttc
actcctatgagcccccggatcagcagccctatgcaccccagtgctgaaggtcagcatggt
ggctttggaagcccaggtggcatgagcaggggtcgagggagaagagacaatgaactcata
ggccagactgtgcgtatctcccagggaccctacaaaggctacattggtgtggtgaaggat
gccacagagtccacggccagagtagaactgcattctacctgccagaccatctctgtggat
cgccagcggctcaccacggtcgactcccagcgtccaggtggcatgacctctacatatgga
cggactcccatgtatggctctcagacacccatgtatggctctggctcccgaacacctatg
tatggctcccagacacctttgcaggatggcagccgcactccacattatggctcacagaca
cccctgcatgatggtagccgcactcctgctcagagtggggcctgggaccccaacaaccca
aacacgccttccagggctgaggaggaatacgaatatgcctttgacgacgaacccacccca
tccccacaagcatatgggggaaccccgaatccccaaacacccggctacccagacccatca
tccccccaggtcaatccacagtacaatccacagacaccagggacgccagccatgtacaac
acagaccagttctccccctacgctgccccctctccacaggggtcttaccagcccagcccc
agcccccagagctaccaccaagtggcaccaagtccagcaggctatcagaacacccattcc
ccagccagctatcacccgacaccgtcacctatggcctatcaggctagtcccagcccaagc
cctgttggctacagtccaatgacccctggagcaccttctcctggaggttacaatccccac
acaccgggctcaggcattgagcagaactctagcgactgggtgaccactgatatccaggtg
aaggttcgagacacctatctggacacacaaatagtggggcagacaggcgtcatccgcagt
gtcacgggaggcatgtgctccgtgtacctgaaggacagtgagaaggtggtcagcatctcc
agtgaacatctggagcccatcacgcccaccaagaacaacaaggtgaaggtgattctgggt
gaggaccgagaggctaccggggtcctactgagcattgatggtgaggatggcatcatccgc
atggacctagaggaccagcagatcaagattctaaacctccgcttcctagggaagctcctg
gaagcctga
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integrated database retrieval system
