Mus musculus (house mouse): 100043292 Help Entry 100043292         CDS       T01002                                  Symbol Alyreffm10, Gm4340 Name (RefSeq) Aly/REF export factor family member 10   KO K12881   THO complex subunit 4 Organism mmu  Mus musculus (house mouse) Pathway mmu03013   Nucleocytoplasmic transport mmu03015   mRNA surveillance pathway mmu03040   Spliceosome mmu05014   Amyotrophic lateral sclerosis mmu05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:mmu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100043292 (Alyreffm10)   09122 Translation    03013 Nucleocytoplasmic transport     100043292 (Alyreffm10)    03015 mRNA surveillance pathway     100043292 (Alyreffm10)  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     100043292 (Alyreffm10)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mmu03019]     100043292 (Alyreffm10)    03041 Spliceosome [BR:mmu03041]     100043292 (Alyreffm10) Messenger RNA biogenesis [BR:mmu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      100043292 (Alyreffm10)     TREX complex      100043292 (Alyreffm10) Spliceosome [BR:mmu03041]  Complex C   Other components    EJC/TREX     100043292 (Alyreffm10)  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     100043292 (Alyreffm10) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 DUF1645 TFIIA CCDC53 EOS1 DUF6591 DDHD DUF3408 Presenilin DUF7500 Motif Other DBs NCBI-GeneID:  100043292 NCBI-ProteinID:  NP_001171006 MGI:  3782524 Ensembl:  ENSMUSG00000090854 LinkDB All DBs Position 10:104029903..104032383 Genome browser AA seq 268 aa AA seqDB search MTTMADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRP KQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYD RCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGM TRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQK QQQKQQQQLSAEELDAQLDAYQEMMDTS NT seq 807 nt NT seq  +upstreamnt  +downstreamnt atgactaccatggctgacaaaatggacatgtcattggaagacatcattaagctgaccaag atccagcaaagacgtcatgacaggcctgattcccgggtgaatcgaggcactgggtctaag aggtataggccagctttcacccatggtggaaggaacaggctggcaccatactgcagacca aaacaacttccagacaagtggcagcatgacctgttcattggaggcttcaggggtcaaaac cacgtggatactggtgggaagctcttcttgtcaaatctgcacttcggagtgtcagatgct gatattcagctactctttgctgaatttggaacgttgaagaaatctgctgtgcactatgat cgctgtggacgaagtttagggacagcacaggtgcactttgaaaggaaagcagatgccctg aaggctatgagagagtacaatggcgcccctttggatggccgccctatgaacatccagctt gccacctcacagattgatagacaaggaagacctgcacaaagcaaaaataggggcggcatg acaagaaaccctggctctggagtattaagtggtggaggcaccaagaaatggacacttgga ggcagccagggaagagggagaggcaccatcaggaactcaaaactgcagcaacagcagcag cagcagaagcagaagcagcagcagcagcagcagaagcagcagcagaagcagcagcagaag cagcagcagaagcagcagcagcagctatctgcagaggagctggatgcccagctggatgct tatcaggaaatgatggacaccagctga

Mus musculus (house mouse): 100861880 Help Entry 100861880         CDS       T01002                                  Symbol Alyreffm11, Gm21293 Name (RefSeq) Aly/REF export factor family member 11   KO K12881   THO complex subunit 4 Organism mmu  Mus musculus (house mouse) Pathway mmu03013   Nucleocytoplasmic transport mmu03015   mRNA surveillance pathway mmu03040   Spliceosome mmu05014   Amyotrophic lateral sclerosis mmu05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:mmu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     100861880 (Alyreffm11)   09122 Translation    03013 Nucleocytoplasmic transport     100861880 (Alyreffm11)    03015 mRNA surveillance pathway     100861880 (Alyreffm11)  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     100861880 (Alyreffm11)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mmu03019]     100861880 (Alyreffm11)    03041 Spliceosome [BR:mmu03041]     100861880 (Alyreffm11) Messenger RNA biogenesis [BR:mmu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      100861880 (Alyreffm11)     TREX complex      100861880 (Alyreffm11) Spliceosome [BR:mmu03041]  Complex C   Other components    EJC/TREX     100861880 (Alyreffm11)  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     100861880 (Alyreffm11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 TFIIA Septin FoP_duplication EOS1 DUF6591 DDHD Presenilin Motif Other DBs NCBI-GeneID:  100861880 NCBI-ProteinID:  NP_001257827 MGI:  5434648 Ensembl:  ENSMUSG00000091779 LinkDB All DBs Position 10:103978848..103981288 Genome browser AA seq 264 aa AA seqDB search MTTMADKMDMSLEDIIKLTKIQQRRHDRPDSRVNRGTGSKRYRPAFTHGGRNRLAPYCRP KQLPDKWQHDLFIGGFRGQNHVDTGGKLFLSNLHFGVSDADIQLLFAEFGTLKKSAVHYD RCGRSLGTAQVHFERKADALKAMREYNGAPLDGRPMNIQLATSQIDRQGRPAQSKNRGGM TRNPGSGVLSGGGTKKWTLGGSQGRGRGTIRNSKLQQQQQQQKQKQQQQQQKQQQKQQQK QQQQLSAEELDAQLDAYQEMMDTS NT seq 795 nt NT seq  +upstreamnt  +downstreamnt atgactaccatggctgacaaaatggacatgtcattggaagacatcattaagctgaccaag atccagcaaagacgtcatgacaggcctgattcccgggtgaatcgaggcactgggtctaag aggtataggccagctttcacccatggtggaaggaacaggctggcaccatactgcagacca aaacaacttccagacaagtggcagcatgacctgttcattggaggcttcaggggtcaaaac cacgtggatactggtgggaagctcttcttgtcaaatctgcacttcggagtgtcagatgct gatattcagctactctttgctgaatttggaacgttgaagaaatctgctgtgcactatgat cgctgtggacgaagtttagggacagcacaggtgcactttgaaaggaaagcagatgccctg aaggctatgagagagtacaatggcgcccctttggatggccgccctatgaacatccagctt gccacctcacagattgatagacaaggaagacctgcacaaagcaaaaataggggcggcatg acaagaaaccctggctctggagtattaagtggtggaggcaccaagaaatggacacttgga ggcagccagggaagagggagaggcaccatcaggaactcaaaactgcagcaacagcagcag cagcagaagcagaagcagcagcagcagcagcagaagcagcagcagaagcagcagcagaag cagcagcagcagctatctgcagaggagctggatgcccagctggatgcttatcaggaaatg atggacaccagctga

Mus musculus (house mouse): 21681 Help Entry 21681             CDS       T01002                                  Symbol Alyref, Aly, Ref1, Ref1-I, Refbp1, Tho4, Thoc4 Name (RefSeq) Aly/REF export factor   KO K12881   THO complex subunit 4 Organism mmu  Mus musculus (house mouse) Pathway mmu03013   Nucleocytoplasmic transport mmu03015   mRNA surveillance pathway mmu03040   Spliceosome mmu05014   Amyotrophic lateral sclerosis mmu05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:mmu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     21681 (Alyref)   09122 Translation    03013 Nucleocytoplasmic transport     21681 (Alyref)    03015 mRNA surveillance pathway     21681 (Alyref)  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     21681 (Alyref)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mmu03019]     21681 (Alyref)    03041 Spliceosome [BR:mmu03041]     21681 (Alyref) Messenger RNA biogenesis [BR:mmu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      21681 (Alyref)     TREX complex      21681 (Alyref) Spliceosome [BR:mmu03041]  Complex C   Other components    EJC/TREX     21681 (Alyref)  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     21681 (Alyref) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 FoP_duplication RRM_occluded Motif Other DBs NCBI-GeneID:  21681 NCBI-ProteinID:  NP_035698 MGI:  1341044 Ensembl:  ENSMUSG00000025134 UniProt:  O08583 Structure PDBPDBj LinkDB All DBs Position 11:complement(120485330..120489342) Genome browser AA seq 255 aa AA seqDB search MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA IARGAAGGGRNRPAPYSRPKQLPDKWQHDLFDSGFGGGAGVETGGKLLVSNLDFGVSDAD IQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV TSQIDTQRRPAQSINRGGMTRNRGSGGFGGGGTRRGTRGGSRGRGRGTGRNSKQQLSAEE LDAQLDAYNARMDTS NT seq 768 nt NT seq  +upstreamnt  +downstreamnt atggccgacaaaatggacatgtctttggacgacatcattaagctgaaccggagccagcga ggaggccgcggcgggggccggggtcgcggcagggccggctcccagggcggccgcggcggc gcagtgcaggccgccgcgcgggtgaatcgaggcggcgggcctatgaggaaccggcccgcc atcgcccgcggcgccgcaggcggcggcaggaaccggccggcgccgtacagcagaccgaaa caacttcccgacaaatggcagcacgacctcttcgacagcggcttcgggggtggagccggc gtggagaccggcgggaagctgctggtgtccaacctggacttcggagtgtcagatgctgat attcaggaactctttgctgaatttgggacattgaaaaaagctgctgtgcactatgatcgc tctggacgaagtttagggacagcagatgtgcactttgaacggaaagcagatgccctgaag gctatgaaacagtacaatggtgtccctttggatggccgccctatgaacatccagcttgtc acatcacagattgatacacagcgaagacctgcacagagcataaacagaggcggcatgaca agaaaccgtggctctggaggttttggtggtggtggcaccaggagagggacacgtggaggc agccggggaagaggtagaggcaccggcaggaactcaaagcagcagctttctgcagaggag ttggacgcacagctggatgcttacaatgcaaggatggacaccagctaa

Mus musculus (house mouse): 56009 Help Entry 56009             CDS       T01002                                  Symbol Alyref2, C130042O11Rik, REF2, Refbp2 Name (RefSeq) Aly/REF export factor 2   KO K12881   THO complex subunit 4 Organism mmu  Mus musculus (house mouse) Pathway mmu03013   Nucleocytoplasmic transport mmu03015   mRNA surveillance pathway mmu03040   Spliceosome mmu05014   Amyotrophic lateral sclerosis mmu05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:mmu00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     56009 (Alyref2)   09122 Translation    03013 Nucleocytoplasmic transport     56009 (Alyref2)    03015 mRNA surveillance pathway     56009 (Alyref2)  09160 Human Diseases   09164 Neurodegenerative disease    05014 Amyotrophic lateral sclerosis     56009 (Alyref2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:mmu03019]     56009 (Alyref2)    03041 Spliceosome [BR:mmu03041]     56009 (Alyref2) Messenger RNA biogenesis [BR:mmu03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     EJC complex      56009 (Alyref2)     TREX complex      56009 (Alyref2) Spliceosome [BR:mmu03041]  Complex C   Other components    EJC/TREX     56009 (Alyref2)  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     56009 (Alyref2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  RRM_1 FoP_duplication FYTT Motif Other DBs NCBI-GeneID:  56009 NCBI-ProteinID:  NP_062357 MGI:  1913144 Ensembl:  ENSMUSG00000060244 UniProt:  Q9JJW6 G3X9I4 Structure PDBPDBj LinkDB All DBs Position 1:171331046..171332318 Genome browser AA seq 218 aa AA seqDB search MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARGGRNRPAPYSRPKPLPDKWQHDL FDSGCGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADV HFERRADALKAMKQYKGVPLDGRPMDIQLVTSQIDPQRRPAQSGNRGGMTRSRGSGGFGG RGSQGRGRGTGRNSKQQQLSAEELDAQLDAYNARRDTS NT seq 657 nt NT seq  +upstreamnt  +downstreamnt atggccgacaagatggacatgtctttggacgacatcattaagctgaaccgtaaccagcgc cgggtgaatcgaggcggcgggcctaggaggaaccggcccgccatcgcccgcggcggcagg aaccggccggcaccgtacagtagaccgaaaccacttccggacaagtggcagcacgaccta ttcgacagcggctgcgggggtggggaaggcgtggagaccggtgccaagctgctcgtgtca aacctggacttcggggtgtcagatgctgacattcaggaactctttgctgaatttggaacg ttgaaaaaagccgctgtggactacgatcgctctggacgaagtttagggacggcggatgta cactttgaacggagggcagatgccctgaaggctatgaagcagtacaagggcgtccctttg gatggccgccctatggacatccagcttgtcacgtcacagatcgatccacagcgaagacct gcacaaagcggaaacagaggcggcatgacaaggagccgtggctctggaggctttggtggc cgcggcagccagggaaggggtagaggcactggcaggaactcaaagcagcagcagctttct gcagaggagttggacgcacagctggatgcttacaatgcaaggagggacaccagctaa

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