KEGG   Mus musculus (house mouse): 192170
Entry
192170            CDS       T01002                                 
Symbol
Eif4a3, 2400003O03Rik, Ddx48, eIF4A-III, mKIAA0111
Name
(RefSeq) eukaryotic translation initiation factor 4A3
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    192170 (Eif4a3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    192170 (Eif4a3)
   03015 mRNA surveillance pathway
    192170 (Eif4a3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    192170 (Eif4a3)
   03041 Spliceosome [BR:mmu03041]
    192170 (Eif4a3)
   03009 Ribosome biogenesis [BR:mmu03009]
    192170 (Eif4a3)
   03012 Translation factors [BR:mmu03012]
    192170 (Eif4a3)
Enzymes [BR:mmu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     192170 (Eif4a3)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     192170 (Eif4a3)
   mRNA cycle factors
    Stress granule specific factors
     192170 (Eif4a3)
Spliceosome [BR:mmu03041]
 Complex C
  Other components
   EJC/TREX
    192170 (Eif4a3)
Ribosome biogenesis [BR:mmu03009]
 Eukaryotic type
  90S particles
   Helicases
    192170 (Eif4a3)
Translation factors [BR:mmu03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    192170 (Eif4a3)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 AAA_30 AAA_22 Flavi_DEAD
Other DBs
NCBI-GeneID: 192170
NCBI-ProteinID: NP_619610
MGI: 1923731
Ensembl: ENSMUSG00000025580
UniProt: Q91VC3
LinkDB
Position
11:complement(119179189..119190869)
AA seq 411 aa
MAANATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1236 nt   +upstreamnt  +downstreamnt
atggcggctaacgccacgatggcgacgtctggctcggcgcggaagcggctgctcaaagag
gaggacatgaccaaagtggagttcgagacgagcgaggaggtggacgtgacccccacgttc
gacaccatgggcctgcgagaggacctgctgcgcggcatctacgcctacggttttgaaaaa
ccttcagcgattcagcagcgtgctatcaagcagataattaaagggagagatgtcattgca
cagtctcagtctggcacaggcaagacggccaccttcagtgtctcagtgctgcagtgcttg
gatatccaggttcgagaaacccaagctttgatcctggctccaaccagggagttagcggtg
cagattcagaagggtctgctcgcgctgggggattacatgaacgtgcagtgccatgcctgc
attgggggcaccaacgtcggcgaggacatccggaagctggactacggacagcacgtggtg
gcaggcacgccgggacgcgtctttgatatgatccgccggagaagtttacggacacgggct
atcaagatgctggttttggatgaggctgatgaaatgttgaacaaaggtttcaaggagcag
atctatgatgtgtacaggtacttgccaccagccacacaggtcgtcctcatcagcgccaca
ctgcctcatgagatcctggagatgaccaacaagttcatgaccgaccccatccgcatcttg
gtgaagcgtgatgagttgactctggaaggcatcaaacagttctttgtggctgtggaaaga
gaggaatggaaatttgatactctatgtgatctctatgacacgctgaccatcacccaggcc
gtcatcttctgcaacaccaagcggaaggttgactggctgacagagaaaatgagagaagcc
aatttcactgtgtcgtccatgcatggagacatgccccagaaagaacgagagtctatcatg
aaggagttccggtcaggtgccagccgggtgctcatctccacagacgtctgggcccggggc
ctggatgtccctcaggtgtccctcatcattaactacgacctgcccaacaacagagaactg
tacattcacagaattgggagatcgggtcggtatggacgaaaaggtgtggccatcaatttt
gtgaagaatgatgacatccggattctcagggacattgagcagtactactccacccagata
gacgagatgcccatgaatgtggctgacctcatctga

KEGG   Mus musculus (house mouse): 434050
Entry
434050            CDS       T01002                                 
Symbol
Gm5576, EG434050
Name
(RefSeq) predicted pseudogene 5576
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    434050 (Gm5576)
  09122 Translation
   03013 Nucleocytoplasmic transport
    434050 (Gm5576)
   03015 mRNA surveillance pathway
    434050 (Gm5576)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    434050 (Gm5576)
   03041 Spliceosome [BR:mmu03041]
    434050 (Gm5576)
   03009 Ribosome biogenesis [BR:mmu03009]
    434050 (Gm5576)
   03012 Translation factors [BR:mmu03012]
    434050 (Gm5576)
Enzymes [BR:mmu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     434050 (Gm5576)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     434050 (Gm5576)
   mRNA cycle factors
    Stress granule specific factors
     434050 (Gm5576)
Spliceosome [BR:mmu03041]
 Complex C
  Other components
   EJC/TREX
    434050 (Gm5576)
Ribosome biogenesis [BR:mmu03009]
 Eukaryotic type
  90S particles
   Helicases
    434050 (Gm5576)
Translation factors [BR:mmu03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    434050 (Gm5576)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 AAA_30 AAA_22
Other DBs
NCBI-GeneID: 434050
NCBI-ProteinID: XP_036008337
MGI: 3644832
Ensembl: ENSMUSG00000108045
LinkDB
Position
6:78192861..78194152
AA seq 411 aa
MAATATMARSGSARKRLLKEEDMTKVEFETSEEVDRTPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISMLQCLDIQVRETQALILAPTRELAV
QIQKGLLTLGDYMNVQCHACIGGTNVDEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRA
IKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPICIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA
NFTVSSMHGNMPQKERESIMKEFRSGASRVLISTDIWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1236 nt   +upstreamnt  +downstreamnt
atggcggccacggccacgatggcgaggtctggctcggcgcggaagcggctgctcaaagaa
gaggacatgaccaaagtggagttcgagacgagcgaggaggtggacaggacccccacgttc
gacaccatgggcctgcgagaggacctgctgcgcggcatctacgcctacggttttgaaaaa
ccttcagcgatccagcagcgtgctatcaagcagataatgaaaggcagagatgtcattgca
cagtctcagtctggcacaggcaagacggccaccttcagtatctcaatgctgcagtgcttg
gatatccaggttcgagaaacccaagctttgatcctggctccaaccagagagttagcggta
cagattcagaagggtctgctcactctgggggattacatgaacgtgcagtgccatgcctgc
atcgggggcaccaatgtcgacgaggacatccggaagctggactacgggcagcatgtggtg
gcaggcactccgggacgcgtctttgatatgatccgccggagaagtttacggacacgggct
atcaagatgctggttttggatgaggctgatgaaatgttgaacaaaggtttcaaggagcag
atctacgatgtgtacaggtatttgccaccagccacacaggtcgttctcatcagtgccaca
ctgcctcatgagatcctggagatgaccaacaagttcatgaccgaccccatctgcatcctg
gtgaagcgtgatgagttgactctggaaggcatcaaacagttctttgtggccgtggaaaga
gaggaatggaagtttgatactctatgtgatctctacgacacgctgaccatcacccaggcc
gtcatcttctgcaacaccaagaggaaggttgactggctcacagagaaaatgagagaagcc
aatttcactgtgtcatccatgcatggaaacatgccccagaaagaacgagagtctatcatg
aaggagttccggtcaggtgccagccgggtgctcatctccacagacatctgggctcggggc
ctggatgtccctcaggtgtccctcatcattaactatgacctgcccaacaacagagaactg
tacattcacagaattgggagatcgggtcggtatggacgaaaaggtgtggccatcaatttt
gtgaagaatgatgacatccggattctcagggacatcgagcagtactactccacccagata
gacgagatgcccatgaacgtggctgacctcatctga

KEGG   Mus musculus (house mouse): 668137
Entry
668137            CDS       T01002                                 
Symbol
Eif4a3l1, B020013A22Rik, EG668137, Gm8994
Name
(RefSeq) eukaryotic translation initiation factor 4A3 like 1
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
mmu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    668137 (Eif4a3l1)
  09122 Translation
   03013 Nucleocytoplasmic transport
    668137 (Eif4a3l1)
   03015 mRNA surveillance pathway
    668137 (Eif4a3l1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    668137 (Eif4a3l1)
   03041 Spliceosome [BR:mmu03041]
    668137 (Eif4a3l1)
   03009 Ribosome biogenesis [BR:mmu03009]
    668137 (Eif4a3l1)
   03012 Translation factors [BR:mmu03012]
    668137 (Eif4a3l1)
Enzymes [BR:mmu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     668137 (Eif4a3l1)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     668137 (Eif4a3l1)
   mRNA cycle factors
    Stress granule specific factors
     668137 (Eif4a3l1)
Spliceosome [BR:mmu03041]
 Complex C
  Other components
   EJC/TREX
    668137 (Eif4a3l1)
Ribosome biogenesis [BR:mmu03009]
 Eukaryotic type
  90S particles
   Helicases
    668137 (Eif4a3l1)
Translation factors [BR:mmu03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    668137 (Eif4a3l1)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 AAA_22 Cas3-like_C_2
Other DBs
NCBI-GeneID: 668137
NCBI-ProteinID: NP_001136206
MGI: 3644226
Ensembl: ENSMUSG00000094973
UniProt: E9PV04
LinkDB
Position
6:136304537..136306981
AA seq 411 aa
MATTTRMATSGSARKRLLKEDGMTKVEFETSEEVDATPTFDTMGLREDLLRGIYAYGFEK
PSAIQQRAIKQIMKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV
QIQKGLLALGDYMNVQCHACVGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLTTRA
IKMLVLDEADEMLNRGFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTNKFMTHPIRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCITKRKVDWLTEKMREA
NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNREL
YIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNLADLI
NT seq 1236 nt   +upstreamnt  +downstreamnt
atggcgaccacgaccaggatggcgacgtctggctcggcgcggaagcggctgctcaaagag
gacggcatgaccaaagtggagttcgagaccagcgaggaggtggacgcgacccccacgttc
gacaccatgggcctgcgagaggacctgctgcgcggcatctacgcctacggttttgaaaaa
ccttcagcgatccagcagcgtgctatcaagcagataatgaaagggagagatgtcatcgca
cagtctcagtctggcacaggcaagacggccaccttcagtatctcagtgctccagtgcttg
gatatccaggttcgagaaacccaagctttgatcctggctccaaccagagagttagcggtg
cagattcagaagggtctgctcgctctgggagattacatgaacgtgcagtgccatgcctgc
gttgggggcaccaatgtcggggaggacatccggaagctggactacgggcagcatgtggtg
gcaggcacgccgggacgcgtctttgatatgatccgccggagaagtttaacgacacgggct
atcaagatgctggttttggatgaggctgatgagatgttgaacagaggtttcaaggagcag
atctatgatgtgtacaggtatttgccaccagccacacaggtcgttctcgtcagtgccaca
ctgcctcatgagatcctggagatgaccaacaagttcatgacccaccccatccgcatcctg
gtgaagcgtgatgagttgactctggaaggcatcaaacagttctttgtggccgtggaaaga
gaggaatggaagtttgatactctgtgtgatctctacgacacgctgaccatcacccaggcc
gtcatcttctgcatcaccaagaggaaggttgactggctgacagagaaaatgagagaagcc
aatttcactgtgtcgtccatgcatggagatatgccccagaaagaacgagagtctatcatg
aaggagttccggtcaggtgccagccgggtgctcatctccacagatgtctgggctcgaggc
ctggatgtccctcaggtgtccctcatcattaactatgacctgcccaacaacagagaactg
tacattcacagaattgggagatcgggtcggtatggacgaaaaggtgtggccatcaatttt
gtgaagaatgatgacatccggattctcagggacatcgagcagtactactccacccagata
gacgagatgcccatgaacctggctgacctcatctga

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