Mus musculus (house mouse): 20969
Help
Entry
20969 CDS
T01002
Symbol
Sdc1, AA408134, AA409076, CD138, Sstn, Synd, Synd1, syn-1
Name
(RefSeq) syndecan 1
KO
K06257
syndecan 1
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04512
ECM-receptor interaction
mmu04514
Cell adhesion molecules
mmu05144
Malaria
mmu05205
Proteoglycans in cancer
mmu05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
20969 (Sdc1)
04514 Cell adhesion molecules
20969 (Sdc1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
20969 (Sdc1)
09174 Infectious disease: parasitic
05144 Malaria
20969 (Sdc1)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
20969 (Sdc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmu04131
]
20969 (Sdc1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
mmu04090
]
20969 (Sdc1)
00535 Proteoglycans [BR:
mmu00535
]
20969 (Sdc1)
Membrane trafficking [BR:
mmu04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
20969 (Sdc1)
CD molecules [BR:
mmu04090
]
Proteins
20969 (Sdc1)
Proteoglycans [BR:
mmu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
20969 (Sdc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Romo1
Motif
Other DBs
NCBI-GeneID:
20969
NCBI-ProteinID:
NP_035649
MGI:
1349162
Ensembl:
ENSMUSG00000020592
UniProt:
P18828
Q3V1F2
LinkDB
All DBs
Position
12:8821396..8843716
Genome browser
AA seq
311 aa
AA seq
DB search
MRRAALWLWLCALALRLQPALPQIVAVNVPPEDQDGSGDDSDNFSGSGTGALPDTLSRQT
PSTWKDVWLLTATPTAPEPTSSNTETAFTSVLPAGEKPEEGEPVLHVEAEPGFTARDKEK
EVTTRPRETVQLPITQRASTVRVTTAQAAVTSHPHGGMQPGLHETSAPTAPGQPDHQPPR
VEGGGTSVIKEVVEDGTANQLPAGEGSGEQDFTFETSGENTAVAAVEPGLRNQPPVDEGA
TGASQSLLDRKEVLGGVIAGGLVGLIFAVCLVAFMLYRMKKKDEGSYSLEEPKQANGGAY
QKPTKQEEFYA
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgagacgcgcggcgctctggctctggctctgcgcgctggcgctgcgcctgcagcctgcc
ctcccgcaaattgtggctgtaaatgttcctcctgaagatcaggatggctctggggatgac
tctgacaacttctctggctctggcacaggtgctttgccagatactttgtcacggcagaca
ccttccacttggaaggacgtgtggctgttgacagccacgcccacagctccagagcccacc
agcagcaacaccgagactgcttttacctctgtcctgccagccggagagaagcccgaggag
ggagagcctgtgctccatgtagaagcagagcctggcttcactgctcgggacaaggaaaag
gaggtcaccaccaggcccagggagaccgtgcagctccccatcacccaacgggcctcaaca
gtcagagtcaccacagcccaggcagctgtcacatctcatccgcacgggggcatgcaacct
ggcctccatgagacctcggctcccacagcacctggtcaacctgaccatcagcctccacgt
gtggagggtggcggcacttctgtcatcaaagaggttgtcgaggatggaactgccaatcag
cttcccgcaggagagggctctggagaacaagacttcacctttgaaacatctggggagaac
acagctgtggctgccgtagagcccggcctgcggaatcagcccccggtggacgaaggagcc
acaggtgcttctcagagccttttggacaggaaggaagtgctgggaggtgtcattgccgga
ggcctagtgggcctcatctttgctgtgtgcctggtggctttcatgctgtaccggatgaag
aagaaggacgaaggcagctactccttggaggagcccaaacaagccaatggcggtgcctac
cagaaacccaccaagcaggaggagttctacgcctga
Mus musculus (house mouse): 20971
Help
Entry
20971 CDS
T01002
Symbol
Sdc4, AA959608, AW108331, S4, Synd4, ryudocan, syndecan-4
Name
(RefSeq) syndecan 4
KO
K16338
syndecan 4
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04512
ECM-receptor interaction
mmu04514
Cell adhesion molecules
mmu05205
Proteoglycans in cancer
mmu05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
20971 (Sdc4)
04514 Cell adhesion molecules
20971 (Sdc4)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
20971 (Sdc4)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
20971 (Sdc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mmu00535
]
20971 (Sdc4)
Proteoglycans [BR:
mmu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
20971 (Sdc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
20971
NCBI-ProteinID:
NP_035651
MGI:
1349164
Ensembl:
ENSMUSG00000017009
UniProt:
O35988
Q3U5S6
LinkDB
All DBs
Position
2:complement(164266167..164285512)
Genome browser
AA seq
198 aa
AA seq
DB search
MAPACLLAPLLLLLLGGFPLVPGESIRETEVIDPQDLLEGRYFSGALPDDEDAGGSDDFE
LSGSGDLDDTEEPRPFPEVIEPLVPLDNHIPENAQPGIRVPSEPKELEENEVIPKRAPSD
VGDDMSNKVSMSSTAQGSNIFERTEVLAALIVGGVVGILFAVFLILLLVYRMKKKDEGSY
DLGKKPIYKKAPTNEFYA
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctgcctgcctgcttgcgccgctgctgctgctgctcctcggaggcttccccttg
gtccccggagagtcgattcgagagacagaggtcatcgacccccaggacctcctggaaggc
agatacttctctggagccctccccgacgacgaagatgctggcggctcggatgactttgag
ctctcgggttctggagatctggatgacacggaggagcccaggcccttccctgaagtgatt
gagcccttggtgccactggataaccacatccctgagaatgcacagcctggcatccgtgtc
ccctcagagcccaaggaactggaagagaatgaggtcattcctaaaagggccccctccgac
gtgggggatgacatgtccaacaaagtatccatgtccagcactgcccagggcagcaacatc
tttgagagaactgaggtcttggcagctctgatcgtgggcggcgtggtaggcatcctcttt
gccgttttcctgatcctgctgctggtgtaccgcatgaagaagaaggacgaaggcagttac
gacttgggcaagaaacccatctacaaaaaagcccccaccaatgagttctacgcatga
DBGET
integrated database retrieval system
