KEGG   Mus musculus (house mouse): 52639
Entry
52639             CDS       T01002                                 
Symbol
Wipi1, 4930533H01Rik, D11Ertd498e
Name
(RefSeq) WD repeat domain, phosphoinositide interacting 1
  KO
K17908  autophagy-related protein 18
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04136  Autophagy - other
mmu04140  Autophagy - animal
mmu05010  Alzheimer disease
mmu05014  Amyotrophic lateral sclerosis
mmu05016  Huntington disease
mmu05017  Spinocerebellar ataxia
mmu05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    52639 (Wipi1)
   04136 Autophagy - other
    52639 (Wipi1)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    52639 (Wipi1)
   05014 Amyotrophic lateral sclerosis
    52639 (Wipi1)
   05016 Huntington disease
    52639 (Wipi1)
   05017 Spinocerebellar ataxia
    52639 (Wipi1)
   05022 Pathways of neurodegeneration - multiple diseases
    52639 (Wipi1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    52639 (Wipi1)
   03029 Mitochondrial biogenesis [BR:mmu03029]
    52639 (Wipi1)
Membrane trafficking [BR:mmu04131]
 Autophagy
  Autophagosome formation proteins
   Atg18-Atg2 complex
    52639 (Wipi1)
Mitochondrial biogenesis [BR:mmu03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    52639 (Wipi1)
SSDB
Motif
Pfam: PROPPIN Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Prp19 WD40 WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st WDR55 Beta-prop_NWD2_C Beta-prop_WD40_POC16_2nd ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_VPS8 EIF3I Beta-prop_EML DUF5711 Beta-prop_RSE1_2nd Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N BCAS3_WD40
Other DBs
NCBI-GeneID: 52639
NCBI-ProteinID: NP_666052
MGI: 1261864
Ensembl: ENSMUSG00000041895
UniProt: Q8R3E3
LinkDB
Position
11:complement(109464347..109502215)
AA seq 446 aa
MEAEAADAPPGRVEAALSCFSFNQDCTSLAIGTKAGYKLFSLSSVEQLDQVHGSNEIPDV
YIVERLFSSSLVVVVSHTKPRQMNVYHFKKGTEICNYSYSSNILSIRLNRQRLLVCLEES
IYIHNIKDMKLLKTVLDIPSNPTGLCALSINHSNSYLAYPGSQSTGEIVLYDGNSLKTVC
TIAAHEGTLAAITFNSSGSKLASASEKGTVIRVFSVPEGQKLYEFRRGMKRYVTISSLVF
SMDSQFLCASSNTETVHIFKMEHLTDSRPEEPSTWSGYMGKMFMAATNYLPAQVSDMMNQ
DRAFATGRLNFSGQKNICTLSTIQKLPRLLVASSDGHLYIYNLDPQDGGECVLIKTHSLL
SSGTTEENKENDLRPSLPPSYAATVARPSTSAASTVPGYSEDGGALRGEVIPEHEFATGP
VCLDDENEFPPIILCRGSQKGKTKQS
NT seq 1341 nt   +upstreamnt  +downstreamnt
atggaggccgaagccgcagatgcccctccgggccgagtggaggcggcgctcagctgcttc
tctttcaaccaagactgcacatccctagcgattggaaccaaggccggttacaagctgttt
tctctgagttctgtggagcagcttgaccaagtccatggaagcaatgaaatccctgacgtg
tatatcgtggagcgcctcttctccagcagcctggttgtagtggtcagtcacacaaaacct
cggcagatgaacgtctaccatttcaagaaaggcactgagatctgtaattacagctactcc
agcaacattttgtctattcggctcaaccgacagaggctgctggtctgcctggaagaatcc
atctatatccacaacattaaggatatgaagttattgaagaccgtcctggatattccctca
aacccaacaggtctctgtgccctgtctatcaaccattccaactcttacctggcctatcct
ggaagccagagtacaggcgagattgtactctatgatggaaactccctgaaaacggtgtgc
accattgctgcccacgaggggacgctggccgctatcaccttcaactcctcgggctccaag
ctagcaagcgcgtctgaaaaaggcactgtcatccgagtgttctctgttcccgagggccag
aaactctatgagtttcgtcgaggaatgaaaaggtatgtgacaatcagctccctggtgttc
agtatggactcccagttcctgtgtgcctccagcaacacggagaccgtgcacatcttcaag
atggaacacctgacagacagccgcccagaagagccttccacctggagcggctacatggga
aagatgttcatggcagctaccaactacctccccgcccaggtgtcggacatgatgaaccag
gacagggctttcgccacaggacgcctgaacttctctgggcagaagaacatttgcaccctg
tccacgatccagaaactgccgcggttgctggtggcctcctccgacggacacctttacatc
tacaacttggacccacaggatggaggagaatgtgtcctaatcaaaacccacagcttgctt
agctcaggaacaacagaagagaacaaagaaaatgacctcagaccttccttacctccatct
tatgctgcaactgtagcaaggcccagcacgtctgcagcctccacggtgccaggatactct
gaggacggcggggcgctccgaggggaagttattccggaacacgagtttgcgacgggacca
gtgtgtctagacgacgagaatgagtttccccctataatcttgtgccgtggaagtcagaag
ggcaaaacgaagcagtcctga

KEGG   Mus musculus (house mouse): 54636
Entry
54636             CDS       T01002                                 
Symbol
Wdr45, DXImx38e, JM5, Sfc19, WIPI-4, Wdrx1
Name
(RefSeq) WD repeat domain 45
  KO
K22991  WD repeat-containing protein 45
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    54636 (Wdr45)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    54636 (Wdr45)
Membrane trafficking [BR:mmu04131]
 Autophagy
  Other autophagy associated proteins
   Others
    54636 (Wdr45)
SSDB
Motif
Pfam: PROPPIN WD40 WD40_WDHD1_1st WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_RSE1_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_Vps41 Beta-prop_WD40_POC16_2nd BCAS3_WD40 Beta-prop_WDR19_1st CPSF_A Beta-prop_IFT80_2nd Beta-prop_HPS5 Beta-prop_DCAF4 Beta-prop_IFT140_1st EIF3I
Other DBs
NCBI-GeneID: 54636
NCBI-ProteinID: NP_001277721
MGI: 1859606
Ensembl: ENSMUSG00000039382
UniProt: Q91VM3
LinkDB
Position
X:7588212..7594439
AA seq 360 aa
MTQQPLRGVTSLHFNQDQSCFCCAMETGVRIYNVEPLMEKGHLDHEQVGSVGLVEMLHRS
NLLALVGGGSSPKFSEISVLIWDDAREGKDSKDKLVLEFTFTKPVLAVRMRHDKIVIVLR
NRIYVYSFPDSPRKLFEFDTRDNPKGLCDLCPSLEKQLLVFPGHKCGSLQLVDLASTKPG
TSSAPFTINAHQSDVACVSLNQPGTVVASASQKGTLIRLFDTQSKEKLVELRRGTDPATL
YCINFSHDSSFLCASSDKGTVHIFALKDTRLNRRSALARVGKVGPMIGQYVDSQWSLASF
TVPAESACICAFGRNTSKNVNSVIAICVDGTFHKYVFTPDGNCNREAFDVYLDICDDEDF
NT seq 1083 nt   +upstreamnt  +downstreamnt
atgactcagcagccacttcgaggtgtgaccagcctacatttcaaccaagaccaaagctgc
ttttgctgcgccatggagacaggcgtccggatctacaatgtggagccacttatggagaag
gggcatcttgaccacgagcaggtaggcagcgtgggcctggtagagatgctgcaccgatcc
aacctgctggccctggtgggcggtgggagcagccccaagttctctgagatctcagtgctg
atctgggacgatgcccgagaaggcaaggactccaaggacaaactggtgctggagttcacc
ttcaccaagccagtgctggctgtgcgcatgcgccatgacaagatcgtgattgtgctgagg
aaccgcatctatgtgtactccttccctgacagtccaagaaagctgtttgagtttgacact
cgggacaaccccaaggggctgtgtgacctctgtccaagcctggagaagcagctgctcgtg
tttcctggacacaagtgtggaagtctgcaacttgtggatctcgcaagcacaaagcctggt
acttcgtcggcgccattcactatcaatgcacatcagagtgatgtggcctgtgtgtccctg
aaccagccaggcactgtagtggcgtcagcctcccagaagggcacccttattcgtctcttt
gatacccaatccaaggaaaagctggtagagcttcgaagaggcaccgaccctgccaccctg
tactgcattaacttcagccacgactcctccttcctctgtgcttccagtgacaagggcact
gtccacatcttcgctcttaaagacacccgccttaaccgccgctctgcgctggctcgtgtg
ggcaaagtgggacctatgattgggcaatacgtggactctcagtggagcctggccagcttt
actgtgcctgctgagtcagcctgcatctgcgcctttggtcgaaatacttccaagaatgtc
aattctgtaattgccatctgtgtagatgggaccttccacaaatatgtcttcactcctgat
ggaaactgcaacagagaggcctttgacgtgtaccttgacatctgtgatgacgaggacttc
taa

KEGG   Mus musculus (house mouse): 66840
Entry
66840             CDS       T01002                                 
Symbol
Wdr45b, 0610008N23Rik, D16Bwg0193e, WIPI-3, Wdr45l
Name
(RefSeq) WD repeat domain 45B
  KO
K22991  WD repeat-containing protein 45
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    66840 (Wdr45b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    66840 (Wdr45b)
Membrane trafficking [BR:mmu04131]
 Autophagy
  Other autophagy associated proteins
   Others
    66840 (Wdr45b)
SSDB
Motif
Pfam: PROPPIN WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz ANAPC4_WD40 WD40 Beta-prop_Vps41 WD40_Prp19 Beta-prop_IFT122_2nd WDR55 BCAS3_WD40 Beta-prop_EML Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_WDR19_1st EIF3I Beta-prop_VPS8 Beta-prop_IFT122_1st Beta-prop_IFT140_2nd DUF5711 Beta-prop_DCAF12 DUF1513
Other DBs
NCBI-GeneID: 66840
NCBI-ProteinID: NP_080069
MGI: 1914090
Ensembl: ENSMUSG00000025173
UniProt: Q9CR39
LinkDB
Position
11:complement(121218029..121246393)
AA seq 344 aa
MNLLPCNPHGNGLLYAGFNQDHGCFACGMENGFRVYNTDPLKEKEKQEFLEGGVGHVEML
FRCNYLALVGGGKKPKYPPNKVMIWDDLKKKTVIEIEFSTEVKAVKLRRDRIVVVLDSMI
KVFTFTHNPHQLHVFETCYNPKGLCVLCPNSNNSLLAFPGTHTGHVQLVDLASTEKPPVD
IPAHEGVLSCIALNLQGTRIATASEKGTLIRIFDTSSGHLIQELRRGSQAANIYCINFNQ
DASLICVSSDHGTVHIFAAEDPKRNKQSSLASASFLPKYFSSKWSFSKFQVPSGSPCICA
FGTEPNAVIAICADGSYYKFLFSPKGECVRDVCAQFLEMTDDKL
NT seq 1035 nt   +upstreamnt  +downstreamnt
atgaacctcctgccgtgtaaccctcacggcaacgggctgctgtacgccggcttcaaccag
gaccacgggtgttttgcatgtggaatggaaaatggattccgagtctataataccgatcca
ctcaaagaaaaagagaaacaagaatttttagaaggaggagttggccatgtggaaatgtta
tttcgctgtaactatttagctttagttggtggtggaaaaaaaccgaaataccctcccaac
aaagtgatgatctgggatgatctgaagaagaagacagtcatcgagatagaattctccaca
gaggtcaaggctgtcaagttgcggagagatagaattgtggtggttctggactccatgatt
aaggtgttcacgttcacacacaatccccaccagttgcacgtctttgaaacctgctacaac
cctaaaggcctctgtgtcctgtgtcccaacagtaacaactcccttcttgccttccctggc
actcacactggccacgtacagcttgtggacctggccagcactgaaaagccacccgtggac
attcccgcacatgagggtgtcctgagctgtattgctctcaacctgcagggaacaagaatt
gcaactgcatctgaaaaagggacccttataagaatatttgatacttcatcagggcattta
atccaggagctacgaagaggatctcaagcagccaatatctattgcatcaacttcaatcag
gacgcttctctcatctgtgtgtccagtgatcatggcactgtgcacatttttgcagccgaa
gatccaaaaaggaataaacagtctagtttggcatcagccagtttccttccaaaatacttc
agctccaagtggagtttttccaagtttcaggttccttcaggctcaccatgcatctgtgcc
tttggaacagagcccaatgcagtcattgctatctgtgcagatggcagctactacaagttc
ctgttcagtccgaagggcgagtgtgtccgggacgtgtgtgcacagttcctggagatgacc
gatgacaagctgtga

KEGG   Mus musculus (house mouse): 74781
Entry
74781             CDS       T01002                                 
Symbol
Wipi2, 1110018O08Rik, 2510001I10Rik
Name
(RefSeq) WD repeat domain, phosphoinositide interacting 2
  KO
K17908  autophagy-related protein 18
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu04136  Autophagy - other
mmu04140  Autophagy - animal
mmu05010  Alzheimer disease
mmu05014  Amyotrophic lateral sclerosis
mmu05016  Huntington disease
mmu05017  Spinocerebellar ataxia
mmu05022  Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    74781 (Wipi2)
   04136 Autophagy - other
    74781 (Wipi2)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05010 Alzheimer disease
    74781 (Wipi2)
   05014 Amyotrophic lateral sclerosis
    74781 (Wipi2)
   05016 Huntington disease
    74781 (Wipi2)
   05017 Spinocerebellar ataxia
    74781 (Wipi2)
   05022 Pathways of neurodegeneration - multiple diseases
    74781 (Wipi2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mmu04131]
    74781 (Wipi2)
   03029 Mitochondrial biogenesis [BR:mmu03029]
    74781 (Wipi2)
Membrane trafficking [BR:mmu04131]
 Autophagy
  Autophagosome formation proteins
   Atg18-Atg2 complex
    74781 (Wipi2)
Mitochondrial biogenesis [BR:mmu03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    74781 (Wipi2)
SSDB
Motif
Pfam: PROPPIN WD40_CDC20-Fz Beta-prop_EML_2 WD40 WD40_Prp19 WD40_WDHD1_1st WD40_MABP1-WDR62_2nd ANAPC4_WD40 DUF7165 Beta-prop_WD40_POC16_2nd Beta-prop_Vps41 Beta-prop_RSE1_2nd BCAS3_WD40 VID27 Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 74781
NCBI-ProteinID: NP_848485
MGI: 1923831
Ensembl: ENSMUSG00000029578
UniProt: Q80W47
LinkDB
Position
5:142615269..142655427
AA seq 445 aa
MNLASQSGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCI
VERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLY
IHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSASIGEVQVFDTINLRAANMI
PAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSM
DGMFLSASSNTETVHIFKLEAVREKPPEEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGR
AFATVRLPFCGHKNICSLTTIQKIPRLLVGASDGYLYMYNLDPQEGGECALMRQHRLDGS
METTSEIVDSASHDCPLATQTYGTAAAKGAYVPSSPTRLGKGQDANLEAYTDDLGAVGGA
CLEDEASALRLDEDSEHPPMILRTD
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgaacctggcgagccagagcggagaggccggcgccggccagctgctgttcgccaacttc
aaccaggataacacgtccctagctgttggtagtaagtccgggtataagtttttctccctt
tcttctgtggataagctggaacagatctatgaatgcactgacactgaagatgtctgcatt
gtggagagattgttctcaagcagcttggtggccattgtcagcctcaaagctcccaggaag
ctgaaggtttgccattttaagaagggaactgagatatgcaactacagctactccaacact
atcctggctgtgaagctgaacaggcagcggctcattgtgtgtctggaagagtcgctctac
atacacaacatccgggacatgaaggtacttcataccatccgagagacacccccaaaccct
gcaggcttgtgtgcactgtcaataaacaatgacaactgctacttggcgtatccagggagt
gcgagcattggagaggtgcaggtcttcgacaccattaacttgagagctgcaaacatgatc
ccagctcatgatagtcccttagcagccctggcttttgatgcaagtgggaccaagcttgcc
actgcttctgagaaggggactgtgattcgggtgttttccattccagagggacagaagctg
tttgagttcaggagaggagtgaagaggtgtgtgagcatctgctccctggccttcagcatg
gacggcatgttcctctccgcatccagcaacaccgaaacagtgcacatcttcaaacttgag
gctgtgagggaaaaacctccggaagagcccaccacctggactggctactttgggaaggtt
ctcatggcatctaccagctacctgccctcacaagtgacagaaatgttcaaccagggcagg
gccttcgccactgtccgcctgccattctgtggccacaaaaacatctgctcactaaccaca
attcagaagatcccacggttgctggtaggagcatcagatggctatttgtacatgtacaac
ctggacccccaggagggaggcgagtgtgcgctgatgcgtcagcacaggcttgatggcagt
atggagacgaccagtgaaatcgtagactctgcatctcatgactgccccttagcaacacag
acgtacggcacagcagctgccaaaggtgcctatgtgccctcgtcccccacaagacttggg
aaagggcaggacgccaacttagaagcctacacagatgacctgggtgctgtgggtggtgca
tgcctagaggatgaagccagcgctctgcgcctggatgaagacagcgaacatcctcccatg
attctccggactgactga

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