Mus musculus (house mouse): 77040
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Entry
77040 CDS
T01002
Symbol
Atg16l1, 1500009K01Rik, Apg16l, Atg16l, WDR30
Name
(RefSeq) autophagy related 16 like 1
KO
K17890
autophagy-related protein 16-1
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04136
Autophagy - other
mmu04140
Autophagy - animal
mmu04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
77040 (Atg16l1)
04136 Autophagy - other
77040 (Atg16l1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
77040 (Atg16l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmu04131
]
77040 (Atg16l1)
03029 Mitochondrial biogenesis [BR:
mmu03029
]
77040 (Atg16l1)
Membrane trafficking [BR:
mmu04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
77040 (Atg16l1)
Others
Specific organelles associated proteins
Auto phagosome
77040 (Atg16l1)
Mitochondrial biogenesis [BR:
mmu03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
77040 (Atg16l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF4
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
WD40_RFWD3
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_IFT122_1st
NBCH_WD40
eIF2A
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_ACSF4
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_VPS8
Beta-prop_NWD2_C
Tricorn_2nd
KASH_CCD
Motif
Other DBs
NCBI-GeneID:
77040
NCBI-ProteinID:
NP_084122
MGI:
1924290
Ensembl:
ENSMUSG00000026289
UniProt:
Q8C0J2
Structure
PDB
PDBj
LinkDB
All DBs
Position
1:87683730..87720150
Genome browser
AA seq
607 aa
AA seq
DB search
MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLEKSDLHSVLTQKLQAEK
HDMPNRHEISPGHDGAWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DKEIQMNEAKISEYLQTISDLETNCLDLRTKLQDLEVANQTLKDEYDALQITFTALEEKL
RKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVIVDETSDHTEETSPVRAVSRAATKRLSQPAGGLLDSITNIFGRRSVSSIPVPQDIMDT
HPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFGDKCEFKG
SLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKVLSAKFLLDN
ARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDKKIRFWDIRSES
VVREMELLGKITALDLNPERTELLSCSRDDLLKVIDLRTNAVKQTFSAPGFKCGSDWTRV
VFSPDGSYVAAGSAEGSLYVWSVLTGKVEKVLSKQHSSSINAVAWAPSGLHVVSVDKGSR
AVLWAQP
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctgcgcgccgcagactttccccgctggaagcgtcacatcgcggaggaa
ctgaggcgccgggaccgactgcagaggcaggcgttcgaggagatcattctgcagtatacc
aagttgctggaaaagtcagatcttcattcagtattgacccagaaactacaagcagaaaag
catgacatgccaaataggcatgaaataagtcctggacatgatggtgcgtggaatgatagt
caactacaagaaatggcccagttgaggatcaaacaccaggaagagctgaccgaactgcac
aagaagcgtggggagttagctcagttggtgattgacctgaacaaccaaatgcagcagaag
gacaaggagatacagatgaatgaagcaaagatttcggagtatttacagaccatctctgac
ctggagacaaactgcctggacctgcgcaccaaactgcaggacctcgaggtagccaaccag
accctgaaggatgagtatgacgccctgcagattacttttactgccctagaagagaaactg
aggaaaactactgaggagaaccaggaactggtcaccagatggatggctgagaaggcccaa
gaagccaatcgcctcaatgcagagaatgagaaggactccaggaggcgtcaagcacggctg
cagaaggagcttgcagaagcagcaaaggaacctctacctgttgaacaggatgatgacatt
gaagtcattgtggatgagacctcagaccacacagaagagacctctcccgtccgagctgtc
agcagagcagctactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttgggagacgctctgtctcttccatcccagtcccccaggatatcatggacact
catcctgcttctggtaaagatgtgagagtcccaactactgcctcgtatgtcttcgatgcg
catgacggagaggtcaacgcagtgcagttcagtccaggctcccggttgctggccactgga
ggcatggaccgcagggtgaaactttgggaagcattcggagataaatgtgaattcaagggc
tccctgtctggcagtaatgctggaattacaagcattgaatttgatagtgctggagcttac
ctattagcagcttcaaatgattttgcaagccgaatctggactgtggatgattatcgatta
cggcacacactcacaggccacagcgggaaagtcctctctgccaagttcctgctggacaat
gcacggattgtctcaggaagtcacgaccggaccctcaaactctgggatctccgcagcaaa
gtctgcataaaaacagtgtttgcaggatccagctgcaatgacattgtttgcactgaacaa
tgtgtaatgagtggacattttgacaagaaaattcgtttctgggatatccggtcagagagt
gtggtccgagagatggaactgttagggaagatcactgctctggacctaaaccctgagaga
actgagctcctgagctgctcccgtgatgacctgctaaaagtcatcgacctccggacaaat
gcagtcaaacagacattcagtgcgcctggattcaaatgcggctctgactggacccgggtt
gtcttcagccctgatggcagttacgtggcagcaggctcagccgagggttctctttatgtc
tggagtgtgctgacagggaaagtggagaaggttctttcaaaacagcacagctcttctatc
aatgcggtggcgtgggccccctcgggcttacatgttgtcagtgtggacaaaggaagcaga
gctgtgctgtgggcacagccttga
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