Mycobacteroides abscessus subsp. massiliense GO 06: MYCMA_0741
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Entry
MYCMA_0741 CDS
T02177
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmv
Mycobacteroides abscessus subsp. massiliense GO 06
Pathway
mmv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYCMA_0741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmv03019
]
MYCMA_0741
03009 Ribosome biogenesis [BR:
mmv03009
]
MYCMA_0741
Enzymes [BR:
mmv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MYCMA_0741
Messenger RNA biogenesis [BR:
mmv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYCMA_0741
Ribosome biogenesis [BR:
mmv03009
]
Prokaryotic type
rRNA helicases
MYCMA_0741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
UvrA_inter
CMS1
P-loop_SecA
HEM4
adh_short
Surface-like_ins_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AFN62902
LinkDB
All DBs
Position
complement(3393188..3394984)
Genome browser
AA seq
598 aa
AA seq
DB search
MTSTDIPTPDTGDSSAPPADDTVTFADLHIAPEVLRAVSDVGYETPSAIQAATIPPLLAG
SDVVGLAQTGTGKTAAFAIPILSKIDLTSKDTQALVLAPTRELALQVAEAFGRYGAHMPK
LNVLPIYGGQSYVVQLAGLKRGAQVVVGTPGRVIDHLERGTLDLSHLDYLVLDEADEMLT
MGFAEDVERILADTPEYKQVALFSATMPTTIRRLTKKYLHDPVEIKIDAKTSTAENITQR
FIQVAGPRKMDALTRILEVETFEAMIVFVRTKQATEEVADKLKARGFAAAAINGDINQSQ
RERTINALKAGTIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSG
TAVLFVSPRERHLLKAIEKTTGAKLAEEPLPSVEDVNAQRVTKFRDAITAALAAPEVELF
RRLVEDYERDNNVPVADIAAALAVLSRDGEQFLLQPDPPREPRHERGERPDRGPRGERPR
TPGLATYRIAVGKRHKVMPGAIVGAIANEGGLHRSDFGHITIRPDHSLVELPAKLSPKTL
KALENTRISGVLIDLRPAGGPDGARPDRKYPERRRADHKHSDHKRSEAKRPKRAPKKP
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgacctctacagatatccccacgcccgacaccggcgattcgagtgcaccccccgcggat
gacaccgtcaccttcgcggacctgcacattgccccggaggtgctgcgtgcggtgtccgac
gtggggtacgagactccctcggccatccaggccgccaccattccgccgctgttggcgggc
tccgatgtggtgggcctggcgcagaccggaacgggaaagaccgcggcgttcgcgatcccg
atcctgtcgaaaatcgatctgacctccaaggacacccaggccttggtgctggcgcccacc
cgtgagctggccttacaggtcgccgaggctttcggccggtacggcgctcacatgcccaag
ctcaatgtgctgcccatctacggcgggcagtcgtatgtggtgcagctggccggactcaag
cggggcgctcaggtggtggtcggtacgcccggacgtgttatcgaccacttggagcgcggc
accctcgatctgtcacacctggactacctggtgctcgatgaggccgacgagatgctcacc
atggggttcgccgaggatgtcgagcgcatcttggccgatacccccgagtacaagcaggtg
gctctgttctcggcgacgatgcccaccacgatccgacggctcaccaagaagtatctgcac
gatcccgtggagatcaagatcgacgcgaagacgtcgaccgctgagaacatcacgcagcgc
ttcatccaggtggccggcccacgcaagatggacgcactcaccagaatcctcgaggtcgag
accttcgaggcgatgatcgttttcgtcaggaccaagcaggccaccgaggaagtggcagac
aagctcaaggcgcggggcttcgcggcggcggccatcaatggcgacatcaaccagtcccag
cgcgagcgcaccatcaacgcgctcaaggcgggaaccatcgacatcctggtggccacagac
gtggcggcgcgcggtctggatgttgagcgcatctcccatgtgctcaactacgacattccg
catgacaccgagtcgtatgtgcaccgcatcggccgcaccggccgtgcgggccgctcgggc
accgcggtgttgttcgtgtcgccgcgtgagcggcacctactcaaggcgatcgaaaagacc
acgggtgccaagctcgccgaggagccgctgccctcggtcgaggatgtcaacgcccagcga
gtcaccaagttccgcgatgccatcactgcggcgctcgcggcgccggaggtcgaactcttc
cgccgcctggtcgaggactacgagcgcgacaacaacgtcccggtggccgatatcgcggcg
gcgctagcggtgctgtcgcgcgacggcgaacagttcctgttgcaacccgatccgccgcgt
gagccccgtcatgagcgcggggagcgtcccgaccgtggacctcgtggagagcgtccgcgc
acccccggactggcgacatatcgcatcgcggtggggaagcggcacaaggtgatgccgggc
gccatcgtgggcgcgatcgccaacgagggcggattgcatcgcagcgacttcggtcacatc
accattcggcccgatcactcactggtcgagctacctgccaagctgtctcccaagacactg
aaggcattggagaacacccggatctcgggcgtgctcatcgatctgcgccctgccggtggt
ccggacggtgcgcgtcccgaccgcaagtaccccgaacgcagacgcgcggaccacaaacat
tcggaccacaaacgttcggaggcgaagcgtcccaagcgggcccccaagaaaccatga
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