Monoraphidium neglectum: MNEG_11468
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Entry
MNEG_11468 CDS
T05028
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mng
Monoraphidium neglectum
Pathway
mng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNEG_11468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mng03019
]
MNEG_11468
Messenger RNA biogenesis [BR:
mng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MNEG_11468
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MNEG_11468
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
DUF3819
ARM_Cnot1
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
25728733
NCBI-ProteinID:
XP_013895515
UniProt:
A0A0D2MP60
LinkDB
All DBs
Position
Unknown
AA seq
1091 aa
AA seq
DB search
MATADPNLFAKLHNFVVINPSLAGLAERLQLKRLVPVAVDRAIVEIMPPVVERSVTIACM
TAYEMVTKDYAVDPDENRLRSAAHLMVSSLAGSLALVTCKEPLRVSLANQLHALLSGQME
AHVLEGALQVLVNDNLELGCSIIERAATDKAVRDIDKSLAAAYEARGNARARGQPFYERA
LYAQSQQGRFPAALPESLKPKPGLPQQQRVYEDFARMPRALPPHPLNASFRPDGAPPASP
LQQPQDGSAVQVPDKPLQEGAVSAAAGPLQGVALSDGYVKWQLAADAACSRDPNAVLDAS
GELSALRELLRELLGGSEEAALLVGRRLIKHLWEVPGKAHASLHVDCLALAADVLSGGAG
AGGAPAPGSPPAGPGGRRLAAELTQLWVALASEAKFNRDIGERLLARGLLLLPEVDAYLA
RVLVAQRPASAIDFGVLLVRAVKDGLAGAADVAATLDVLGKLAGSVAGGEQLLQLLSAAR
AASRVRAAERAELPAIGGLRDKGGDPAGLHQQVAGLFEEFARRCVVAPDEKMHAAFVQQL
RAAGLLNMDDATDRMLRVLVELAVAHCLASETPGVRPDGGPAPGPLSFLALDPLVKLAAC
LTLVHGGGEAFLGSLLRMVVALVRRDAEDRGPAFNARPYLRLLAGLASEMGNGAEAGEPG
ALRLVRLIGEALLLLAPSRVPGFAFAYLELLAHRAIMPRLLGAPAAAAGPLALGDLYEAL
LLGLLGFLEPALRAAELTDPLRALYKGTLRLLLVLLHDFPEFLCDHHFRLCDVIPPPAIQ
MRNLILSAFPRNMRLPDPFTPNLKFDKLPEIAAPPQGAPPRDLLLPPPLRAQVDALLARR
AQPGALQALVARLVLPAQGSQQKQGQAQQQQQQQQQQPGGQGQSPVAGQAASAALGLGIV
GASVAPPALGGAGGAVRYAGSLLHALVLYVGGCHAPGSGVERDDPGLSLLAGLAGELDAE
GRYLLLNAIANQLRYPNSHTYYFSCVLLTLFADAPTGPAGEALQAQITRVLLERLIVNRP
HPWGLLITFIELIKNERFNFWNHPFTKAAPELEKLFESVARSCMAAPPAIKPQDVAAAAA
GGTPQAAGVVG
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggccacggcagaccccaatctgtttgccaagctgcacaactttgtggtgatcaacccc
agcttggcgggcctggccgagcggctgcagctgaagcgcctggtgcccgtggccgtggac
cgcgcgatcgtggagatcatgccgccggtggtggagcgcagcgtgaccatcgcgtgcatg
acggcctacgaaatggtgaccaaggactacgcggtcgacccagacgagaaccggctgcgc
agcgcagcgcacctgatggtgtccagcctggccggcagcctcgcgctggtgacctgcaag
gagccgctccgcgtgagcctggccaatcagctgcacgcgctgctgtcgggccagatggag
gctcacgtgctggagggcgcgctgcaggtgctggtcaacgacaacctggagctgggctgc
agcatcatcgagcgcgccgccacggacaaggcggtgcgcgacatcgacaagagcctcgcc
gccgcatacgaggcgcgcggcaacgcgcgagcccgcggccagcccttctacgagcgcgct
ctctacgcgcagtcgcagcaggggcgcttccctgcggcgctgcccgagagcctcaagccc
aagccgggcttgcctcaacagcagcgtgtgtacgaggacttcgcgcgcatgccgcgtgcg
ctgccgccgcacccgctcaatgccagcttcaggcccgacggcgcaccgccggccagcccg
ctgcagcaaccccaggacggcagtgcagtgcaggttcccgacaagcctcttcaggagggt
gccgtctctgctgcggcggggcccctgcaaggtgtggcgctcagcgacggctatgtcaag
tggcagctggcggcggacgcggcgtgctcgcgcgaccccaacgccgtgctggacgccagc
ggcgagctgtcggcgctgcgcgagctgctgcgcgagctgctgggcggcagcgaggaggcc
gccctgctggtggggcgccgcctcatcaagcacctgtgggaggtgcctggcaaggcccac
gccagcctgcacgtcgattgcctggcgcttgccgcggacgtgctcagcggtggcgccggc
gcagggggcgcgccggccccaggatcgccgcccgccggccccggtgggcggcgcctggca
gcagagctgacgcagctgtgggtggctctggccagtgaggcaaagttcaaccgcgatatc
ggcgagcggctgctggcgcgcggcctgctgctgcttcctgaggtggacgcctacctggcg
cgcgtgctggtggcgcagcgccccgcaagcgccatcgactttggcgtgctgctggtgcgc
gcagtcaaggacggcctcgccggcgccgcagatgttgccgcgacgctcgacgtgctgggc
aagctcgctggcagcgtcgccggcggcgagcagctgctgcagcttctcagcgcggcgcgc
gccgccagccgcgtgcgtgccgctgagcgcgcggagctgccggccatcggcggcctgcgg
gacaagggcggcgaccctgcaggcctgcaccagcaggtggctggcctgtttgaggagttt
gcgcgccgctgtgtcgtggcgccggacgagaagatgcacgcagcgtttgtgcagcagctg
cgcgccgcggggctcctcaacatggacgacgccactgaccgcatgctgcgcgtgctggtc
gagctggcggtggcgcactgcctcgccagcgagacgcccggcgtgcggcccgacggcggc
cctgcccctgggccgctgtcgttcttggcgctcgacccgctggtaaagcttgcagcctgc
ctgacactcgtgcatggcggcggcgaggccttcctgggcagcctgctgcgcatggtggtg
gcgctcgtgcggcgtgacgccgaggaccgcgggccggccttcaacgcgcggccctacctg
cggctcctggccggcctggccagcgagatgggcaacggcgcggaggcaggcgagccaggc
gcgcttcgcctcgtgcggctaatcggcgaggcgctgctgctgctggcgccgtcgcgggtg
cccgggtttgcgtttgcctacctggagctgctggcacaccgcgccatcatgccgcggctg
ctgggggcccctgcggccgccgcgggccccctggccctgggcgacctgtacgaggcgttg
ctgctgggactgctgggcttcctggagccggctctgcgcgccgcagagctcaccgatccc
ctcagggcgctgtacaagggcacgctgcggctgctgctggtgctgctgcacgacttcccc
gagttcctgtgcgaccaccacttccgtctctgcgacgtcatcccgccgcccgccatccag
atgcgcaacctcatcctgtcggctttcccgcgcaacatgcggttgccagaccccttcacg
ccaaacctcaagtttgacaagctgccagagattgcggctccgccgcagggcgcgccgccg
cgcgacctgctgctgccgcccccgctgcgcgcacaggttgatgcgctgctggcgcgccgc
gcgcagccaggcgctctgcaggccctcgtcgcgcggctcgtgctgccggcgcagggctcg
cagcagaagcagggccaggcacagcagcagcagcagcagcagcagcagcagcctggcggc
cagggccagtcgccagtggcagggcaggcggcgtcagcggcactgggattgggcattgtc
ggcgcttctgtggcgccgcctgctttgggcggcgccggcggtgctgtgcggtatgctggc
agcctgctccacgcgctggtgctgtacgtgggcggctgtcatgctccgggctctggcgtg
gagcgcgacgaccccgggctgtcgctgctggcaggcctggcaggggagcttgatgccgag
gggcgctacctgctgctcaacgccatcgccaaccagctgcgctaccccaacagccacacc
tactacttctcatgcgtgctgctgaccctgtttgccgacgcgcccacgggcccggcaggc
gaggcgctgcaggcgcagatcacgcgcgtgctgctggagcggctgattgtcaaccgcccc
cacccctggggcctgctcatcacgttcatcgagctcatcaagaacgagcgcttcaacttc
tggaaccaccccttcaccaaggcggccccagagctggagaagctgtttgagagtgtcgcc
cgctcctgcatggcggcgccacccgccatcaagccgcaggatgtcgccgcggccgcggcg
ggaggcacgcctcaggcggcaggggtggtggggtga
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integrated database retrieval system
