Monoraphidium neglectum: MNEG_1330
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Entry
MNEG_1330 CDS
T05028
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
mng
Monoraphidium neglectum
Pathway
mng03022
Basal transcription factors
mng03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mng00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
MNEG_1330
09124 Replication and repair
03420 Nucleotide excision repair
MNEG_1330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mng03021
]
MNEG_1330
03400 DNA repair and recombination proteins [BR:
mng03400
]
MNEG_1330
Transcription machinery [BR:
mng03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
MNEG_1330
DNA repair and recombination proteins [BR:
mng03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
MNEG_1330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
25730748
NCBI-ProteinID:
XP_013905647
UniProt:
A0A0D2K8Y6
LinkDB
All DBs
Position
Unknown
AA seq
483 aa
AA seq
DB search
MQADAAAAHPPALQSLNLASYIASLAPEARSQLYSSPWTCQAVFRALEPLGQQYVLRLLY
APEPLPDGFVRNWAKSDTTSAKKHEVALRLLQELSLLAAEARGGTTTWALHEVFKEHLRS
ALAGSTHGGGMVDAVVLSVMPGQEAIAEYAVKQWEGVLTFLLDPTRQAPPSMPVGLRHEP
LDVERLVAAAGLIKEPDRALTGAGFRFLLMDTNGQAWTLLRDYIRSAEQASAAQLSSVLS
FLMQLGFRQVGRPYALAGLSPLEQRIAAHMAQLGLLYTFKAEGGTYFCPTALASTLCGGG
AAAAAALSPSGLSAGVGGGGYVIVETNFRIYAYTSSRIQVRVLEEFCRLDCALPNLFVGT
LTRDSVQHALGKGMTADDIIGFLQSHAHPQVAARVPSVPETVQDQIRLWERETQRVDMSP
AFWYSNFEDVTLYERSRAFAQQRGVLLWDSAERQQMVVTQQGHTLVKEHIKLLKAQAAMG
TAL
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgcaggccgacgcggcggcggcgcaccccccagccttgcagtcgcttaacctcgcctca
tacattgcgtcgctagccccggaggcgcggtcccagctgtatagcagcccctggacctgc
caggctgtcttcagggccctggagccgctggggcagcagtatgtgctgaggctactgtac
gcgccagagcccctgccagacggctttgtgcgaaactgggccaagagcgacaccacctct
gccaagaagcatgaggtggcgctgaggctgctgcaggagctgtcgctgctggcggcggag
gcccggggtggcaccaccacctgggctctccacgaggtgttcaaggagcacctgcgctcg
gccctggcgggaagcacccatggcggcgggatggttgatgcagtggtgctgtcagtgatg
ccgggccaggaggccatcgccgagtacgcggtcaagcagtgggagggcgtcctcacgttc
ctgctggacccaacacgccaggcgcctccctccatgccggtcggcctgcgccacgagccg
ctggacgtggagcgcctggtggcggccgcggggctgatcaaggagccggaccgcgccctc
acgggggcgggcttcaggttcctgctgatggacaccaacggccaggcctggacactgctg
cgggactacatccggtcggcggagcaggcgtcagcggcccagctgtcgtcggtgctgagc
ttcctcatgcagctgggattcagacaggtggggcggccctacgccctggctggcctgagc
cctctggagcagcgcattgccgcccacatggcccagctggggctactctacacctttaag
gcggagggcggcacctacttctgccccactgccctggcatcaacgctgtgcggcggcggc
gctgctgcggccgcggccctgagccctagcgggttgtctgccggcgttggtggcgggggg
tacgtcatcgtggagaccaacttcaggatctatgcgtacacaagctcccgcatccaggtg
cgagtgctggaggagttttgccggctggactgcgccctcccaaacctttttgttggcacc
ctgacgcgggacagcgtacagcacgccctgggcaaggggatgacggcagatgacatcatc
ggattcctgcagagccacgcacacccccaggtggcagcgcgggtgcccagtgtccctgag
accgttcaggaccagatccggctgtgggagcgcgagacgcagcgcgtagacatgtccccg
gccttctggtactcaaactttgaggacgtcacgctgtacgagaggagccgcgcctttgcg
cagcagcggggggtgctcctgtgggacagcgcagagcggcagcaaatggtggtcacccag
cagggccacaccctggtcaaggagcacatcaagctgctcaaagcccaggcggccatgggc
acggcgctgtga
DBGET
integrated database retrieval system
