Monoraphidium neglectum: MNEG_5135
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Entry
MNEG_5135 CDS
T05028
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mng
Monoraphidium neglectum
Pathway
mng03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mng00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNEG_5135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mng03019
]
MNEG_5135
Messenger RNA biogenesis [BR:
mng03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
MNEG_5135
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
MNEG_5135
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNOT1_CAF1_bind
CNOT1_TTP_bind
CNOT1_HEAT
TFIIA
Glyco_H_20C_C
CCDC53
Motif
Other DBs
NCBI-GeneID:
25738012
NCBI-ProteinID:
XP_013901847
UniProt:
A0A0D2JVM8
LinkDB
All DBs
Position
Unknown
AA seq
992 aa
AA seq
DB search
MASDPGGGSAHWLARAMQELGYPCTASEAAFKGLLKQFPGRIDEATVAEALGLMARTVRG
LEPDGLGLSATLAAVLSDGPPAAPLGEAGSATWNVAVVVDVTKARSPGLAWRRVAEGLDH
DGFLVPEPAGLGILTTAFRRATGESLPISALVGRLWSNAAGQLSLLAAATVAPPDAVPWD
ASPRRVAPLEGLVSGASAAGTANGCWLSVDLLAVLCQLADAGQAGPVRSLLEAGPGKACR
EVLLCSLGALRAAGDTDWGALERLLWSSLLPPFLTGHANSGLVLRRLWDSNPAALLKGMG
LWAGGDIGRVARLVDLLAQLGVLHAALEVAPLELSLDLADAAARRELLGATLDGWLAERL
ARQGGGLVRPVARYLEARMAAAPTPPPQLPLDQGRAPPPQLACETAACLLRGLHAHVACG
GGADLASEVSRAQAHAVVAYPGAEALLAAAAAVPAAGSSGGPFSSDVEEEANMHFHSIYS
ENRPVEEVVEQMRRFKVSGNARQVEVFRCMVHNLLDEFRFFPNYPDKELSVTAALFGRLV
AANLFSGMALGVALQCLLTAVSEPTDSKLFRFGLGALVQFRGDLTRWPAFCAGAAPHAAR
IRSVDSAVADALERALQQQRAAAAATGGSGGSGGEGDGKQRGGSGMADMSSANGGAGGAG
GGDGGVEQQQQPQQQQQQQQQQQQQQQQQQQHHQQHPLPPPPQQQRQASSSGPGTGQGSS
GNKAAGGRKGGDGGDGGGGGGGPGTMTITDSVGGSGTGEALNKLLQSNVAQAAALSTLNE
KPPVVSLSTTINNETLESAERNLRDFKAPPDTAMDKVSFIMNNLSKNNLAAKSKDLAALV
IVPGYVEWFANYLTVKRAAQEPNHHLLYMELLETMGDKALVKSVLRTTYYYASALLESDR
AITQTNERTLIKQLGTWLGLQTFARNKPVLVVDMDLKAMIRDAYQRGRMIAVLPFVQKVL
EGCKGSKVFKATNPMVHGILALLAEVHGMEHL
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgacccgggtggcggcagtgcgcactggctggcgcgcgcaatgcaggagctt
ggctatccctgcacggcgagcgaagccgcgttcaaggggctgcttaagcagtttcctggg
cgcatcgacgaggccactgtggccgaggcgctcggcctgatggcgcgcaccgtgcgcggc
cttgagcccgatggcctcggcctgtcagcgacgctcgctgcagtgctgtcagatggcccg
ccagcggcgcccctgggcgaggccggcagtgccacatggaatgtggcggtggtcgtggat
gtcaccaaggcgcgatctcccggccttgcgtggcggcgcgtcgcagagggcctggaccac
gatggcttcttagtgcccgagcctgctgggctgggcattctcaccacagccttccgtcgc
gcgacgggcgagagccttcccatctcagctctcgtcgggcgcctgtggtcaaacgcagct
ggtcagctgtcacttctggcggcggccacagtggcgccgccagatgccgtgccgtgggat
gcgagcccgcggcgtgtcgcgcctctggagggactggtcagcggcgcgtcggcggcgggc
acggccaacggttgctggctgagcgtggacctgctggctgtgctctgtcagctggcagac
gcggggcaggcgggcccagtccgcagcctcctcgaggctggcccaggcaaggcctgccgc
gaggtgttgctctgcagcctgggcgcgctccgggcagcgggcgacacagactggggcgcg
ctcgagcgcttgctatggagcagcctgcttccgccgttcctcacaggccatgcgaacagc
gggcttgtccttcggcggctgtgggacagcaacccggctgcgctcctcaagggcatgggc
ttgtgggctggtggcgacatcgggcgcgttgcgcggctggttgacctgttggcgcagctg
ggcgttctgcatgcagcgcttgaggtggctcccctcgagctgtctctcgatttggcagac
gctgctgcgcggcgtgagctgctgggggcgacgctggacggctggctggcggagcggctt
gcgcggcagggcggaggcttggtgcggccagttgcccgctacctcgaggcgcgcatggcc
gcggctcccacgccgccgccgcagctgcctctcgaccagggtcgagcccctccgcctcaa
ctggcgtgtgagacggcggcgtgcctgctgcgaggcctgcatgctcacgtcgcatgcggc
ggtggtgcagatcttgcgtcagaggtgtcgcgtgcacaggctcatgcagtggtggcctac
cctggggctgaggcgctactggccgcggctgcagcggtgccagcggctggcagcagcggc
gggccgttttcttctgatgtggaagaggaggccaacatgcactttcattcgatctacagt
gagaatcgtcctgtggaggaggtcgtggagcagatgcggcgcttcaaggtcagcggcaac
gcacgccaggtcgaggtgttccgttgcatggtccacaacctgctggacgagttcaggttc
ttccccaactaccctgacaaggagctctccgtcacagcagccctctttggccgcctcgtt
gctgccaacctcttctcgggcatggcgctcggcgtcgcgcttcagtgcctgctgacggcg
gtcagcgagcccaccgactccaagctcttccgctttggccttggcgcgctagtgcagttc
cgtggcgacctgacgcggtggcccgcgttctgtgcgggcgcagctccccacgcggcgcgc
atccgctccgttgactcggcggtggccgacgccctggagcgcgcgctgcagcagcagcgg
gcagcggcagcggcgactggtggtagcggcggtagtggtggggagggtgacggcaagcag
cggggcggcagcggcatggctgacatgagctctgccaacggcggcgccggcggtgcaggc
ggaggcgatggcggcgtggagcagcagcaacagccgcagcagcagcagcagcagcagcag
cagcagcagcagcagcagcagcagcaacagcaacaccaccagcagcacccgcttccaccg
ccgccgcagcagcagcggcaggcgagcagctctggcccaggcacgggccagggcagcagc
ggaaacaaggcggctggtggcaggaagggcggcgatggtggcgacggcggcggcggcggc
ggcggcccgggcactatgaccattaccgactctgtgggcggcagcggcacgggggaggcg
ctgaacaaacttcttcagagcaacgtagcgcaggcggcggccctgtcgacgctgaatgag
aagccgccggtggtcagcctcagcacgaccatcaacaatgagacgctggagagcgcggag
cgcaacctgcgcgatttcaaggcgccccccgacaccgcgatggacaaggtgtctttcatc
atgaacaacctctccaagaacaacctcgccgccaagtccaaggacctcgccgccctcgtc
atcgtgcctgggtacgtcgagtggttcgccaactacctcacggtcaagcgcgccgctcag
gagcccaaccaccacctgctctacatggagctgcttgagaccatgggcgacaaggcgctg
gtcaagtccgtcctgcgcaccacctactactacgccagcgcgctgcttgagagcgaccgc
gccatcacacagaccaacgagcggaccctgatcaagcagctgggcacctggctgggcctg
cagacgtttgcgcgcaacaagccggtgctggtggtggacatggacctcaaggccatgatc
cgcgacgcataccagcgcggccgcatgatcgccgtgctgccgtttgtgcagaaggtgctg
gagggctgcaagggcagcaaggtcttcaaggccaccaaccccatggtgcacggcatcctg
gcgctgctagccgaggttcacgggatggagcacctttga
DBGET
integrated database retrieval system
