KEGG   Monoraphidium neglectum: MNEG_6235
Entry
MNEG_6235         CDS       T05028                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
mng  Monoraphidium neglectum
Pathway
mng03040  Spliceosome
mng04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:mng00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    MNEG_6235
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    MNEG_6235
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mng03041]
    MNEG_6235
   04121 Ubiquitin system [BR:mng04121]
    MNEG_6235
   03400 DNA repair and recombination proteins [BR:mng03400]
    MNEG_6235
Enzymes [BR:mng01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     MNEG_6235
Spliceosome [BR:mng03041]
 Complex B
  Other components
   Prp19 complex
    MNEG_6235
 Complex C
   Prp19-CDC5 complex
    MNEG_6235
Ubiquitin system [BR:mng04121]
 Ubiquitin ligases (E3)
  U-box type E3
   MNEG_6235
DNA repair and recombination proteins [BR:mng03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    MNEG_6235
SSDB
Motif
Pfam: WD40_Prp19 Prp19 Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Gbeta Beta-prop_WDR3_2nd WD40_CDC20-Fz EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_TEP1_2nd zf-Nse WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C WDR55 Beta-prop_CAF1B_HIR1 U-box Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_1st Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_WDR41 Beta-prop_DCAF12 Beta-prop_WDR19_1st V_ATPase_I_N Beta-prop_IFT140_1st Beta-prop_EML FKBP15 zf-C3HC4_2 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Rtf2 DUF4407
Other DBs
NCBI-GeneID: 25739111
NCBI-ProteinID: XP_013900740
UniProt: A0A0D2N7A2
LinkDB
Position
Unknown
AA seq 347 aa
MFCAISGTVPEEPVVSKKTGHVFERRLIEKYVQETGKCPVTQAELSQDDLLPLATNKTVK
PRATPATSIPGLLGLFHDEWDALMLETHALRQALHTSRQELSHALYQHDAACRVIARLMR
ERDEARGALDSMRETLRAEFEAKKRGAEDGAAEDGEEAPSKRAKAAGIPQSVLDEVAEVN
AALSKARKKRVVPDSVATPEEVAGYTLVGSYAVHSASKGGIADIDLHPQQPSVAATAGAD
STVRLFDTQQERQLASLQGHTKRVTAARFAGATALVTGSADKTVRLWRAEAEGGDPAGGY
KCAAVLSDHAGEVVAVTVHPGQRYFVSASADASWAFWDVEGAACLKQ
NT seq 1041 nt   +upstreamnt  +downstreamnt
atgttctgcgcgatcagcggcacggtgccagaggagcccgtcgtctcgaagaagacgggc
cacgtctttgagcggcggctgatcgagaagtacgtccaagagacgggcaagtgccccgtc
acccaggccgagctcagccaggacgacctgctgccgctggcgacgaacaagaccgtcaag
ccgcgcgcgacgccggcgaccagcatacccggcctgctggggctgttccacgatgagtgg
gatgcgctcatgctggagacccacgcgctgcggcaggcgctgcacaccagccggcaggag
ctgagccatgcgctataccagcacgacgcggcgtgccgcgtgatcgcgcggctgatgcgg
gagcgcgacgaggcgcgcggcgcgctcgacagcatgcgggagactctgcgggccgagttc
gaggctaagaagcgcggcgcggaggacggcgccgccgaggacggcgaggaggcgcccagc
aagcgcgccaaggctgcggggataccccagtccgtgctggacgaggttgccgaggttaac
gcggcgctgtccaaggcgcgcaagaagcgcgtcgtgcccgacagcgtggcgacgcccgag
gaggtggcggggtatacgctcgtgggcagctacgcggtgcacagcgccagcaaaggcggc
atcgcggacattgacctgcacccgcagcagcccagcgtcgcggccaccgccggcgccgac
tcgaccgtgcggctgtttgacacccagcaggagcgccagctcgcctccctgcagggccac
acgaagcgcgtcaccgccgcccgcttcgccggcgcgaccgcgctcgtcacgggctccgcc
gacaagacggtgcggctctggcgcgccgaggcggagggcggcgacccggccggtggctac
aagtgcgcggcggtgctgtcggaccatgccggcgaggtggtggcggtgaccgtgcacccg
gggcagcgctactttgtcagtgcgtcggcggacgccagctgggcgttctgggatgtggag
ggcgcggcgtgcctcaagcag

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