Macrobrachium nipponense (oriental river prawn): 135203555
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Entry
135203555 CDS
T09903
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mnz
Macrobrachium nipponense (oriental river prawn)
Pathway
mnz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mnz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135203555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mnz03019
]
135203555
Messenger RNA biogenesis [BR:
mnz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135203555
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135203555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
NOT1_connector
CNOT1_1st
CNOT1_CAF1_bind
Motif
Other DBs
NCBI-GeneID:
135203555
NCBI-ProteinID:
XP_064089367
LinkDB
All DBs
Position
24:complement(74820028..75008189)
Genome browser
AA seq
2052 aa
AA seq
DB search
MSHFAFTYLCNFDAHRFSSPSFVQVVRQFGGEAERHLYRVLIGNLEWSGPQSGETHRPSP
NNNNNNNKDKEPPSSVSVATLGWCSASGGASALLLQHLSATLPHTIFIANLAFAIANPPS
PSKYIKAQWVSSVCKVLRLSRVQEITLSLTLLQATSVEVRNQAIALLKAKLPDLVRAYVD
TESGDRELLELPTEALHQLLAQIVQLWRDPPAALLPQESRQAFICALQREFPRSRVPVVL
APLLYPDSDVLMEKITQEPPANMAKNLLDGSLADLVLELGYSFCNTVEECRSNLMNFGVS
SITPAAVAKVLGVMVRTHTGLPSEQIGLQNLNSPSSLWSDNKDKSSSSQSQPVSGNDSNL
GGSGNIAGPHGWNVEVFVKALLEVVPSLNLKDVFAKLDHKGFLVKDRQGLKLLITALRSL
LQGQGMRQEVFPVDCFYMQWKNSEEQLSLFTEILKSPDIFCFTEYPCVLVATDCLKSLPD
LENKEIATWRSMQLLETLLYLGEAGHYAVVKELFKFPIQHCPDILVLGLVQATFPYTMLR
QDLIASLIPIFLGNHPNAAIILHNAWHTQNNTTTVRQIVMHAMAEWYMMVENDQTRLGRI
LDVAQDLKALSLLLNAQPFPFVVDLACLAYRREFLKLDKWLTDKIREHGEAFISACVKFL
QKRCPQLMGGKDDIMPKSSQLPPETMATILVCLNACVLNVTDELADTIMTMFQHCSLLSQ
SQRPRTQQQIGFPGGASAQAGEGTLGGIASNLGNLSIGATGGASSTMFPAPSSTAVPLSG
SLGTAPGSPGRPLGPLSAPGTSQSPLSSIASAIGLPALQMPPTLPPPVGSQLPALPTSSI
IPSTLRSQSVQPTNAPMRQMDITQIFDMPALVTKEVEDEANSYFQRIYNHPPHPTLSIEE
VLEMLKKFHDSSNKREREVYSCMLRNLFEEYKFFPTYPDKELFTTARLFGGIIEQGLVEY
MALGVALRFVMEALHKPHGSKMYYFGIVALDKYRSRLKEYPRYCQHLMAIPHFNEFPPHL
IEYIKYGTQSQEPPSRPSGVVLPPSMNVSPSTPAPSSTTASASAAVSTVGVPPSSAVTSV
VTSVVKTMTATTTTTTTSAVTRPQSITGASAAVGSGKVAFTMTTTNIETLLVATEKEDTP
PPEHIQDKIAFIFNNLSQVNLPQKSSKYRVDSSVSHNAGKLMLSLARLLESDTSGSIPAT
ELQSFPAKQPGRESPGEPSILAWKKLWPDCVAERDFKGFEPVEERPVEEEIVSLGKSMGL
EFDTDNIKDLLTEHGPAADDRRAVGAAQQATDRGVRRQSLHRYQTISEVAAAAAAVAVSA
AVAVAAVAVVAAAVVAVAAAAVAGKVKKLGKNKCTITVHEHIQGSKGMVILFFFSRCWAE
SRDEGKFNLDVIDWLIRSHLLNMQLFDEQLARILEDPRLPTLMPMHSRFIMQLVQMYLVD
DPSNTVLSESDLQLTLEGLVRLCHSRQPPEGLFMLIEALKLKHDLMSGERLSSTHLGGSS
VTGISSLPSLHFHSGVTQARDFQDPPALQEKTEVLLREWIQMYHSPTAGQGSASAFQHYV
KQMNLHGILKTDDLITRFFRICISMCRDLCVRSILEHGQGPASPTYMRSKCFQNLDAFVR
LIALLVKHSGEATNPTTKINLLNKVLGLVSGIMIHDIETNGTEFQQLPYHRILIMLFLEL
NAPEAILESINLPVLMAFTQTLHLLRPSKCPGFAYAWIEIVSHRVFIGRMLAITPQQKGW
SMYSMLLIDLFKFLAPFLRNAELAKPLTMLYKGTLRVLLVLLHDFPEFLCEYHYGFCDVI
PPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDMLPEITISPKIVTNVANLIQPPEFKKNL
DSYLKNRTPVTFLSDMRTYLQQVSSEPGMRYNMSVMNSLVLYVGMQAIAQIHSKGLTPSM
STIAHSAHMDIFQNLGVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTLLHLFAEANAEA
IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPSFRFWSHEFVKCAPEIEKLFESVARS
CMVQKATRDPDA
NT seq
6159 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcactttgcttttacgtatttgtgtaacttcgatgctcataggttttcttctcct
tcctttgtgcaggtggtgcgtcagtttggtggagaggcagagcgacacttgtacagagtg
cttattggaaacctggagtggtctgggccgcaaagtggagaaactcatcgcccttccccc
aataataacaataataataataaggataaggaacctccctccagtgtaagtgtagccacc
cttgggtggtgttctgcaagtggtggggccagtgcactgctcctgcaacacttatctgcc
acccttcctcacacaattttcattgctaatcttgcctttgctattgccaacccaccaagc
cccagcaagtacatcaaagcacagtgggttagtagcgtgtgcaaagttctacgattgtca
cgtgtacaggaaattacgttaagtttaaccttacttcaagcaacaagtgtagaagttcgt
aatcaagcgatagctcttcttaaagccaaactaccagatcttgttcgtgcatacgttgat
acagaatcaggggaccgagagctcttggaacttccaactgaagctcttcaccagctactt
gcacagatcgtccagttgtggagagatccacctgctgctctcttgcctcaggaatccagg
caagcgttcatctgtgctttacagcgagaattccctcgctctcgtgttcctgttgttctt
gctcccctcctctaccctgattcagacgtcctgatggagaagattacacaagagccacca
gccaatatggctaagaacctgcttgatggttcattagctgatcttgttttggaactcggc
tatagtttttgcaacactgtagaggaatgtaggagtaacctgatgaactttggagttagt
tccataactccagcagctgttgccaaagttttaggtgttatggtcaggactcacacaggc
ctcccatcagaacagattggactgcagaacttgaattcaccaagctccctgtggagtgac
aacaaagataaatcatccagcagtcagtcccaaccagtcagtgggaatgattccaatttg
ggtggttcgggtaatattgctggacctcatggatggaatgttgaagtgtttgtaaaagca
cttcttgaagtggtaccaagtttgaatcttaaggatgtctttgccaagctagatcacaag
ggttttttggtgaaagacagacaaggtttaaaactccttatcactgcgctcaggtcatta
cttcaaggacaaggtatgcggcaggaagttttcccagtggattgcttttatatgcagtgg
aagaatagtgaggagcaactcagtctttttacggagattctcaaaagcccagatatattt
tgcttcacagaatacccgtgtgtgctagtggctacagattgccttaaaagtttacctgat
ttagaaaataaagagattgcaacatggaggtcaatgcagttattggaaacactcttgtac
ctaggagaagcaggccactacgcagtagtgaaagaacttttcaaatttccaattcagcat
tgtccagatattttggtgttaggtttagttcaggcaacatttccatacacgatgttgcgc
caagacttaattgcctcgcttatacccatcttcctggggaatcatccaaatgcagctatt
attttgcacaatgcttggcatactcagaacaataccactactgtacgccaaatagtaatg
catgcgatggcagagtggtacatgatggtggagaatgatcagacaagattaggcagaatt
ttggatgttgctcaagacttgaaggcactctctctcttactcaatgcccagccttttccg
ttcgttgttgatttggcctgtcttgcttatagacgtgaatttctcaaattggataagtgg
ttgacggacaaaattcgggagcatggtgaggcattcatttctgcttgtgtcaaatttctc
cagaaacgctgtccacagcttatgggtggcaaagatgacataatgcccaaatcctcgcag
cttcctccagagacaatggctacaatacttgtatgccttaatgcttgtgtcctgaatgtt
actgatgagttggcagacacaataatgaccatgtttcagcattgcagtctgttatctcag
tctcagcgtccaagaacacagcaacagattggatttcctggtggggcatcggcccaggct
ggtgaaggtactcttgggggtattgcttccaatttgggtaaccttagcattggcgctact
ggtggagcctcttcgaccatgtttccagctccttcctcgactgcagtgcctttgagtgga
tcactggggacagcaccaggatctccaggacgtccactaggacctttatcagcacctggg
acatcacagtcacctctgtcatccattgcatcagccattggattacctgccttgcagatg
cctcctaccctacctccaccagtagggtcgcaactcccagcactccctacgtcatcaata
atcccgtcaacactcaggtcgcagtctgtgcagcctactaatgcacctatgaggcaaatg
gacattactcaaatctttgacatgcctgcacttgttaccaaagaagttgaagatgaagcg
aatagttacttccagcgtatttacaaccatcctcctcatcccaccttatccattgaggag
gtattggaaatgctgaaaaagtttcatgattcctctaataagagagagcgagaagtatac
tcatgtatgcttcgaaacttatttgaagagtacaagttttttcctacgtacccagacaaa
gaactttttactacagcacgactttttgggggcattattgaacaaggcttagtagagtac
atggccttaggtgttgcccttcgctttgtaatggaagccctccataaaccacatggatca
aaaatgtattattttggtatagttgctttagataagtatcgaagccgtcttaaagagtat
ccacgatactgtcagcatttgatggcaataccgcacttcaatgaattcccaccgcatctt
atagagtatatcaaatatggcactcagtcacaagagccgccttctcgtccttcgggtgtt
gtattacctccatccatgaatgtgtctcccagtactccagcaccgtcttcaaccactgca
agtgcttcagcagctgtgagcactgttggtgttcctccctcatcagctgttacctcagta
gtgacatctgttgttaaaacaatgactgcaacaactacaactaccaccacctctgctgtt
acccgccctcagtcaattacaggcgcttcggcggcagttggttcaggaaaggttgccttt
actatgacgacgacaaatatcgaaactcttctcgtagcaacagaaaaagaagacacgcca
ccaccagaacatattcaagataagattgccttcatttttaataatctttcacaagtgaat
ctccctcagaagtcttcaaaataccgtgtagattcatctgtttcacataatgctggaaag
ctgatgctgagccttgcccggctgttggagagtgatacatctggatccattcccgcaaca
gaacttcagtcttttcctgcaaagcagcctggcagggaatcaccaggagaaccctcaatt
cttgcatggaagaaactgtggcccgactgcgttgctgaacgagattttaaggggttcgaa
cccgtcgaggagaggccagttgaagaggagattgtatccttgggcaagtccatggggctg
gagtttgacacggacaacatcaaggacctcctgactgagcatgggccagcagctgacgac
cgacgagctgttggagctgcacaacaagcaacagacagaggagtaagaaggcagtcgctt
catcgttaccaaacgataagtgaggttgctgctgctgctgctgctgttgctgtgtctgct
gctgttgctgttgctgctgttgctgttgttgctgctgctgttgttgctgttgctgctgct
gctgttgctggaaaagttaaaaaattgggaaagaataaatgcacaataactgttcacgag
cacatccagggcagtaaaggaatggtaattcttttttttttttccaggtgttgggctgaa
tcaagagatgaggggaaatttaatttggatgtcattgactggttgatccgctctcatttg
ttaaatatgcagctgtttgatgaacaattagcacgtattttagaggatcctcgcctgcct
acgttaatgccaatgcattctcgctttattatgcagctagtccagatgtatttggttgat
gatcccagcaacacagtactgagtgaatccgatctgcagctcactttggaagggttagtt
cgcctttgtcacagtcgccaacctccagagggcctctttatgttgattgaagcacttaaa
ctgaaacacgatctcatgagcggtgaaaggttgagtagtactcacttgggaggaagcagc
gtcactggaatatcaagtcttccaagtcttcacttccattcaggcgtaacacaggctcgg
gattttcaagacccacctgctttgcaggaaaagactgaagttctgttgcgggaatggatc
cagatgtatcactctccaacagccgggcaaggctcagcatcagctttccagcattatgtg
aaacagatgaatctacacggtattttgaagactgacgatcttattactaggttcttccgc
atctgcatttcaatgtgccgagatttgtgcgtgcgttccattctggaacatggacaaggc
cctgcatcacccacttacatgcgaagcaaatgtttccagaatttggatgcgtttgtgcgc
ctcattgccttgttagtcaaacattctggggaggccacaaacccaacaaccaagattaat
ctgctgaataaggtacttggtctagtctctggcatcatgatccacgacatagaaactaac
ggaactgaattccaacaacttccatatcaccgtatcctgataatgctgttcctagaattg
aatgctccagaagccatattagagtctatcaatttaccagttctcatggcgttcacccaa
accttacacctactgcgtcccagcaagtgcccgggctttgcgtatgcatggatagaaata
gtgagccaccgtgtcttcataggacgtatgctggccatcactccccagcaaaagggatgg
tccatgtattcgatgttgttgattgatctcttcaagttcttagcaccattcctcaggaat
gcagagcttgcaaaaccgcttacaatgctttacaaaggaaccttgcgggtattgttggtt
ctcttgcacgacttcccagaatttctctgtgaataccattacgggttctgtgacgtcatc
cctccaaactgcattcagatgcgcaacttgattttgagcgcatttccccgtaacatgaga
cttcctgacccatttactccaaatctgaaagttgatatgttgcctgaaatcacaatatct
cccaagattgtaacaaatgttgccaatttaattcaaccgccagaatttaagaagaacctg
gattcttacctgaagaatagaacaccagttacgttcctttcagatatgcgtacgtactta
cagcaagtttccagtgaacccgggatgaggtacaacatgtctgtgatgaattctttggtg
ctgtatgttggcatgcaggctattgcacagattcatagtaaggggttaactccttccatg
tccacgattgctcactccgcccacatggacatctttcagaacctcggtgttgatttagac
acagaaggtcgttacttgttcctgaatgccatagccaatcagttgcgttatccaaatagc
catacgcattacttcagctgcacactcttacatctctttgctgaagcaaatgcagaagca
attcaggaacagataaccagggttcttctggagaggttgattgtcaatcgaccacaccct
tggggtttactcatcacattcatcgagttgattaagaatccttcttttaggttctggagt
catgagtttgtcaaatgtgcccctgaaattgaaaagttgtttgagtctgtggcacgttcg
tgtatggttcagaaggctacacgagacccagatgcatga
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integrated database retrieval system
