Methylobacterium oryzae: MOC_2040
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Entry
MOC_2040 CDS
T03299
Symbol
mfd
Name
(GenBank) Transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mor
Methylobacterium oryzae
Pathway
mor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MOC_2040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mor03400
]
MOC_2040 (mfd)
Enzymes [BR:
mor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MOC_2040 (mfd)
DNA repair and recombination proteins [BR:
mor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MOC_2040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
AAA_16
MFD_D3
SecA_DEAD
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIQ89795
UniProt:
A0A089NTD9
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All DBs
Position
2088229..2091825
Genome browser
AA seq
1198 aa
AA seq
DB search
MAKPQPKPPAPAAKPQVARFALPKSSALARAIDALKRGDSPVLANAPEGFDALALADLAR
ALAPTVDAPAVLVHVARDSGRSASFQAALGFVAPEMDVMSLPAWDCQPYDRVSPTTATAA
ARMTALARLARTRSAEDRPRILCTTVNALVQRVPPRTHIAKEAFSAAIGNVVSMDDVVAW
VEANGFLRTGTVRDTGEYAVRGGILDLSPPGLAAPIRLDFFGDTLESIRAFDPETQRTTG
QLRSLDLMPMSEVQLTTETIRRFRQGYIQSFGAATRDDRLYETVSEGRRYAGLEHWMPLF
YDHLDTLFDYLGGVPLVFDPQVEDAAAERISLVQDYYQAREGAMKTPQAGVAPYKPLPPR
ALYLTPNELKERIATATVARLTPFAQPESTERAVIDCGAKAGRSFAPERADENASVFDAA
VAHIRDLQGSGHHVILGAWSDGSRDRLCGVLTDHGLKKPVAITRLTDVYALKRGTDAAVA
VWGLEAGFTAGELAVVSEGDILGDRLVRQKRKAKRPQDVILEVQALQPGDLVVHADHGIG
RFVGLKTIHAAGAPHDCLELQYTGGLLLLPVENIELLTRYGSEDSEVALDRLGGGAWQAR
KAKMKRRILEMAGELIKVAAQRFVRKAPALKAPEGLYGEFAARFPFEETEDQANAIDAVL
DDLNAGRPMDRLVCGDVGFGKTEVALRAAFAAAISGKQVAVIVPTTLLARQHYRTFAERF
KGLPVQVAQLSRFASAGEMKQTRAGLIAGTVDIVVGTHALLAKNIAFKDLGLIIVDEEQH
FGVAHKERLKALQADVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLVVRTFVTPF
DPLTIREALLRERYRGGQSFYVVPRIEDLAEVKKFLDAEMPEIKVAVAHGQMAAGQLEDV
MTAFYEGKFDVLLSTTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKARAYAL
FTTPANRQLTAQAEQRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDAQSGHIKEVGYE
LYQQMLEDAVTALKAGIEDVPEEAWSPTIALGAPVTIPETYVEDLGARLALYRRLATLQD
DAEMESFGAELIDRFGPLPPEVEQLLKIGTIKILCLKANVEKVEAGPKGVVVHFRDRSYA
NPQGLVAYVAEQASFAKVRPDMSVVFVRELNTVPARLKTATEVLRSLVKIAERGKKAA
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcctcagccgaagccccccgcccccgccgccaagccgcaggtcgcgcgcttc
gccctgccgaaatcctcggcgctcgcccgggcgatcgacgccctgaagcgcggcgacagc
ccggtcctggcgaacgccccggagggcttcgacgcgctggcgctcgccgacctcgcccgt
gccctggcgcccaccgtcgacgcgccggccgtgctggtccacgtggcgcgggattccgga
cgctcggcctcgttccaggcggcgctcggcttcgtcgcgcccgagatggacgtgatgagc
ctgccggcctgggattgccagccctacgaccgggtctcgccgaccacggccacggccgcc
gcccggatgacggcgctcgcccgcctcgcccgcacccgctccgccgaggaccgcccgcgg
atcctctgcaccacggtcaacgccctggtgcagcgggttccgccccgcacccacatcgcc
aaggaggcgttctcggcggcgatcggcaacgtcgtgtccatggacgacgtggtcgcctgg
gtcgaggccaacggcttcctgcgcaccggcaccgtgcgcgacaccggcgagtatgcggtg
cgcggcggcatcctcgacctgtcgccgccgggcttagccgcgccgatccgcctcgacttc
ttcggcgacacgctggaatcgatccgcgccttcgatccggagacgcagcgcaccaccggg
cagctccgctcgctggacctgatgccgatgagcgaggtccagctcaccaccgagacgatc
cggcgcttccgccagggctacatccagagcttcggcgcggcgacccgggacgaccggctc
tacgagaccgtgagcgaggggcgccgctacgccggcctcgagcactggatgccgctgttc
tacgaccacctcgacacgctgttcgactatctcggcggcgtgccgctggtcttcgacccg
caggtcgaagacgccgccgccgagcggatcagcctcgtccaggattattaccaggcccgc
gagggcgcgatgaagacgccgcaggccggcgtcgctccctacaagccgctgccgccccgg
gccctctacctgacgccgaacgagctgaaggagcggatcgccaccgccacggtggcgcgg
ctgacgcccttcgcgcagcccgaatccacggagcgcgccgtgatcgattgcggcgccaag
gccgggcggagcttcgcccccgagcgggccgacgagaatgccagcgtgttcgacgccgcg
gtggcgcatatccgcgacctccagggatccggtcatcacgtgatcctgggcgcctggtcc
gacggatcccgcgaccggctctgcggcgtgctcaccgaccacggcctcaagaagccggtg
gcgatcacccggctcaccgacgtctacgcgctgaagcgcggcaccgacgcggcggtcgcc
gtctggggcctggaggcgggcttcaccgcgggcgaactcgcggtggtctccgagggcgac
atcctgggcgaccggctggtccgccagaagcgcaaggccaagagaccccaggacgtgatc
ctggaggtgcaggcgctccagcccggcgacctcgtggtccatgccgaccacggcatcggc
cggttcgtcggcctcaagacgatccacgccgcgggtgccccgcacgattgcctggagctg
caatacaccggcggcctgctgctgctgccggtggagaatatcgagctcctgacccgctac
ggctcggaggattccgaggtcgccctcgaccggctcggtggcggcgcgtggcaggcccgc
aaggccaagatgaagcgccgcatcctcgagatggcgggcgaattgatcaaggtcgcggcc
cagcgcttcgtccggaaggcccccgccctcaaggcgccggaggggctctacggggaattc
gccgcccgcttcccgttcgaggagaccgaggatcaggccaacgcgatcgacgcggtgctg
gacgacctcaatgccggccggccgatggaccggctggtctgcggcgatgtcggcttcggc
aagaccgaggtggctttgcgcgccgccttcgcggcggcgatctccggcaagcaggtggcg
gtgatcgtccccacgacgctgctggcccgccagcactaccggaccttcgcggagcgcttc
aaaggattgccggttcaggtggcgcagctctcccgcttcgcctccgccggggagatgaag
cagacgcgggcggggctcatcgccggcacggtcgacatcgtggtcggcacccacgccctc
ttggccaagaacatcgccttcaaggatctcggcctgatcatcgtggacgaggagcagcat
ttcggcgtcgcccacaaggagcggctgaaggcgctccaggccgacgtccacgtgctgacg
ctgtcggcgacgccgatcccgcgcacgctccagctcgccatgacgggggtgcgcgagctc
tcgatcatcgcgacgccgccggtggaccggctggtggtgcgcaccttcgtgacacccttc
gacccgctgaccatccgggaggccctgctgcgcgaacgctaccgcggcggccagtccttc
tacgtggttcccaggatcgaggatctggccgaggtcaagaaattcctcgacgccgagatg
cccgagatcaaggtcgcggtggcccacggccagatggcggccggccagctcgaggacgtg
atgacggccttctacgagggcaagttcgacgtgctgctctcgaccacgatcgtggaatcg
ggcctcgacatccccaccgccaacacgctgatcgtccaccgggccgacatgttcgggctg
gcccagctctaccagctgcgcggccgggtcggtcgctcgaaggcccgggcctacgcgctg
ttcacgaccccggcgaaccgccagctcaccgcccaggccgagcagcgcctcaaggtgctc
cagagcctcgacaccctgggcgcgggcttccagctcgcgagccacgatctcgacatccgc
ggcgccggcaacctgctcggcgacgcgcagtccggccacatcaaggaggtcggctacgaa
ctctaccagcagatgctggaggacgcggtgacggcgctcaaggccggcatcgaggacgtg
cccgaggaggcgtggtcgccgaccatcgcgctgggcgccccggtgaccatcccggagacc
tatgtggaggatctcggcgcgcggctcgcgctctaccggcgcctcgccaccctccaggac
gatgccgagatggagagcttcggcgccgaactcatcgaccggttcgggccgctgccgccg
gaggtggagcaactcctcaagatcggcacaatcaagatcctctgcctcaaggcgaacgtc
gagaaggtcgaggccgggccgaagggcgtggtggtccatttccgcgaccggtcctacgcc
aacccgcaggggctcgtcgcctacgtggccgagcaggcctccttcgcgaaggtgcggccc
gacatgagcgtcgtgttcgtgcgcgagctgaatacggtcccggcccggctcaagaccgcc
accgaggtgctgcgcagcctcgtgaagatcgccgagcgggggaagaaggcggcgtaa
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integrated database retrieval system
