KEGG   Marasmius oreades (fairy-ring mushroom): E1B28_010252
Entry
E1B28_010252      CDS       T08156                                 
Symbol
LSM4
Name
(RefSeq) RNA processing protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
more  Marasmius oreades (fairy-ring mushroom)
Pathway
more03018  RNA degradation
more03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:more00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    E1B28_010252 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E1B28_010252 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:more03019]
    E1B28_010252 (LSM4)
   03041 Spliceosome [BR:more03041]
    E1B28_010252 (LSM4)
Messenger RNA biogenesis [BR:more03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     E1B28_010252 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     E1B28_010252 (LSM4)
Spliceosome [BR:more03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    E1B28_010252 (LSM4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 66079328
NCBI-ProteinID: XP_043007671
UniProt: A0A9P7USI5
LinkDB
Position
6:2445842..2446623
AA seq 129 aa
MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNPDGDRFWKLKECY
IRGSTIKYLRIPDTLLDAVKEEQSRAREAGRNARGGGPQNRGGRGMPARGGRGGRGAPMR
GGRGRGRGA
NT seq 390 nt   +upstreamnt  +downstreamnt
atgttgcctctttctctccttaatgctgcccaaaacaaaccaatgttggtcgagctcaag
aatggagaaactttcaacgggcatttagtcaattgcgataactttatgaacatcacttta
cgagaagtctaccaaacaaatcctgacggagataggttctggaaattgaaggaatgctat
ataagagggagtacgataaagtatcttcggataccggatacactcttggacgcagtgaaa
gaagaacaaagcagagcgagggaagctggtcgtaatgcacgagggggtggtccacaaaac
agaggcggacgaggaatgccagcacgcggaggacgtggtggacgtggagctccaatgcgc
ggcggtagagggagaggacgaggggcataa

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