Marasmius oreades (fairy-ring mushroom): E1B28_010252
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Entry
E1B28_010252 CDS
T08156
Symbol
LSM4
Name
(RefSeq) RNA processing protein
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
more
Marasmius oreades (fairy-ring mushroom)
Pathway
more03018
RNA degradation
more03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
more00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
E1B28_010252 (LSM4)
09123 Folding, sorting and degradation
03018 RNA degradation
E1B28_010252 (LSM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
more03019
]
E1B28_010252 (LSM4)
03041 Spliceosome [BR:
more03041
]
E1B28_010252 (LSM4)
Messenger RNA biogenesis [BR:
more03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
E1B28_010252 (LSM4)
mRNA degradation factors
5'-3' decay
Lsm complex
E1B28_010252 (LSM4)
Spliceosome [BR:
more03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
E1B28_010252 (LSM4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
66079328
NCBI-ProteinID:
XP_043007671
UniProt:
A0A9P7USI5
LinkDB
All DBs
Position
6:2445842..2446623
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AA seq
129 aa
AA seq
DB search
MLPLSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTNPDGDRFWKLKECY
IRGSTIKYLRIPDTLLDAVKEEQSRAREAGRNARGGGPQNRGGRGMPARGGRGGRGAPMR
GGRGRGRGA
NT seq
390 nt
NT seq
+upstream
nt +downstream
nt
atgttgcctctttctctccttaatgctgcccaaaacaaaccaatgttggtcgagctcaag
aatggagaaactttcaacgggcatttagtcaattgcgataactttatgaacatcacttta
cgagaagtctaccaaacaaatcctgacggagataggttctggaaattgaaggaatgctat
ataagagggagtacgataaagtatcttcggataccggatacactcttggacgcagtgaaa
gaagaacaaagcagagcgagggaagctggtcgtaatgcacgagggggtggtccacaaaac
agaggcggacgaggaatgccagcacgcggaggacgtggtggacgtggagctccaatgcgc
ggcggtagagggagaggacgaggggcataa
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